RNA–Protein interactions for RNA: ENST00000496622.1

SSBP1-213, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 1 (best)

Gene SSBP1, Length 2,620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-213ENST00000496622 AEBP2Q6ZN18 517 aaPredicted RBP18.68■□□□□ 0.58
SSBP1-213ENST00000496622 CHIC1Q5VXU3 224 aa17.98■□□□□ 0.47
SSBP1-213ENST00000496622 PHF23Q9BUL5 403 aaPredicted RBP15.97■□□□□ 0.15
SSBP1-213ENST00000496622 SENP3Q9H4L4 574 aaPredicted RBP15.61■□□□□ 0.09
SSBP1-213ENST00000496622 FOXD1Q16676 465 aa14.67□□□□□ -0.06
SSBP1-213ENST00000496622 PLPPR3Q6T4P5 718 aa14.52□□□□□ -0.08
SSBP1-213ENST00000496622 PPP6R1Q9UPN7 881 aa14.19□□□□□ -0.14
SSBP1-213ENST00000496622 ADRA2BP18089 450 aa14.14□□□□□ -0.15
SSBP1-213ENST00000496622 PIAS4Q8N2W9 510 aaPredicted RBP13.8□□□□□ -0.2
SSBP1-213ENST00000496622 MSH5O43196 834 aa13.33□□□□□ -0.28
SSBP1-213ENST00000496622 NISCHQ9Y2I1 1504 aa13.19□□□□□ -0.3
SSBP1-213ENST00000496622 MAPK8IP2Q13387 824 aaPredicted RBP12.9□□□□□ -0.34
SSBP1-213ENST00000496622 PPP4R3CPQ6ZMV5 832 aa12.87□□□□□ -0.35
SSBP1-213ENST00000496622 DNAJC5Q9H3Z4 198 aa12.74□□□□□ -0.37
SSBP1-213ENST00000496622 KCNA4P22459 653 aa12.63□□□□□ -0.39
SSBP1-213ENST00000496622 SCAF1Q9H7N4 1312 aaKnown RBP12.61□□□□□ -0.39
SSBP1-213ENST00000496622 DMRT2Q9Y5R5 561 aa12.47□□□□□ -0.41
SSBP1-213ENST00000496622 POTEDQ86YR6 584 aa12.45□□□□□ -0.42
SSBP1-213ENST00000496622 CNKSR2Q8WXI2 1034 aa12.42□□□□□ -0.42
SSBP1-213ENST00000496622 NPM3O75607 178 aaKnown RBP12.38□□□□□ -0.43
SSBP1-213ENST00000496622 NCBP3Q53F19 620 aaKnown RBP12.33□□□□□ -0.44
SSBP1-213ENST00000496622 DNAJC5BQ9UF47 199 aa12.26□□□□□ -0.45
SSBP1-213ENST00000496622 RNF216Q9NWF9 866 aaPredicted RBP12.19□□□□□ -0.46
SSBP1-213ENST00000496622 HOXD11P31277 338 aaPredicted RBP12.17□□□□□ -0.46
SSBP1-213ENST00000496622 DCAF8L1A6NGE4 600 aa12.12□□□□□ -0.47
SSBP1-213ENST00000496622 SLC4A1APQ9BWU0 796 aaKnown RBP11.9□□□□□ -0.51
SSBP1-213ENST00000496622 SLC4A2P04920 1241 aa11.74□□□□□ -0.53
SSBP1-213ENST00000496622 EHMT2Q96KQ7 1210 aa11.7□□□□□ -0.54
SSBP1-213ENST00000496622 ZBTB22O15209 634 aa11.69□□□□□ -0.54
SSBP1-213ENST00000496622 ABCC9O60706 1549 aa11.68□□□□□ -0.54
SSBP1-213ENST00000496622 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.67□□□□□ -0.54
SSBP1-213ENST00000496622 CCDC180Q9P1Z9 1646 aa11.55□□□□□ -0.56
SSBP1-213ENST00000496622 RNF39Q9H2S5 420 aa11.54□□□□□ -0.56
SSBP1-213ENST00000496622 U3KPZ7 1027 aaPredicted RBP11.54□□□□□ -0.56
SSBP1-213ENST00000496622 CSRNP3Q8WYN3 585 aa11.49□□□□□ -0.57
SSBP1-213ENST00000496622 FOXD4L1Q9NU39 408 aa11.47□□□□□ -0.57
SSBP1-213ENST00000496622 SPINK5Q9NQ38 1064 aaPredicted RBP11.34□□□□□ -0.59
SSBP1-213ENST00000496622 DCAF8L2P0C7V8 631 aa11.32□□□□□ -0.6
SSBP1-213ENST00000496622 CACNB1Q02641 598 aaPredicted RBP11.31□□□□□ -0.6
SSBP1-213ENST00000496622 MYCNP04198 464 aaPredicted RBP11.3□□□□□ -0.6
SSBP1-213ENST00000496622 C1QBPQ07021 282 aaKnown RBP11.29□□□□□ -0.6
SSBP1-213ENST00000496622 ATF5Q9Y2D1 282 aaPredicted RBP11.27□□□□□ -0.61
SSBP1-213ENST00000496622 SHROOM4Q9ULL8 1493 aa11.24□□□□□ -0.61
SSBP1-213ENST00000496622 TRIM41Q8WV44 630 aa11.2□□□□□ -0.62
SSBP1-213ENST00000496622 CAPN15O75808 1086 aa11.19□□□□□ -0.62
SSBP1-213ENST00000496622 TRHP20396 242 aaPredicted RBP11.17□□□□□ -0.62
SSBP1-213ENST00000496622 SAMD1Q6SPF0 538 aaPredicted RBP11.13□□□□□ -0.63
SSBP1-213ENST00000496622 CUX2O14529 1486 aa11.11□□□□□ -0.63
SSBP1-213ENST00000496622 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.11□□□□□ -0.63
SSBP1-213ENST00000496622 HNRNPUL2Q1KMD3 747 aaKnown RBP11.11□□□□□ -0.63
SSBP1-213ENST00000496622 ABCB7O75027 752 aa11.07□□□□□ -0.64
SSBP1-213ENST00000496622 ZCCHC6Q5VYS8 1495 aaKnown RBP11.07□□□□□ -0.64
SSBP1-213ENST00000496622 ILDR1Q86SU0 546 aaPredicted RBP11.05□□□□□ -0.64
SSBP1-213ENST00000496622 DSG3P32926 999 aa11□□□□□ -0.65
SSBP1-213ENST00000496622 ZNF219Q9P2Y4 722 aaPredicted RBP10.97□□□□□ -0.65
SSBP1-213ENST00000496622 POLA2Q14181 598 aa10.95□□□□□ -0.66
SSBP1-213ENST00000496622 RB1CC1Q8TDY2 1594 aa10.93□□□□□ -0.66
SSBP1-213ENST00000496622 ATXN8OSP0DMR3 200 aa10.91□□□□□ -0.66
SSBP1-213ENST00000496622 APLP2Q06481 763 aa10.9□□□□□ -0.66
SSBP1-213ENST00000496622 NACADO15069 1562 aa10.88□□□□□ -0.67
SSBP1-213ENST00000496622 SUPT5HO00267 1087 aaKnown RBP10.87□□□□□ -0.67
SSBP1-213ENST00000496622 CECR2Q9BXF3 1484 aa10.84□□□□□ -0.67
SSBP1-213ENST00000496622 MYO15BQ96JP2 1530 aa10.81□□□□□ -0.68
SSBP1-213ENST00000496622 DCAF1Q9Y4B6 1507 aa10.71□□□□□ -0.69
SSBP1-213ENST00000496622 MKRN4PQ13434 485 aaPredicted RBP10.71□□□□□ -0.7
SSBP1-213ENST00000496622 PABPN1Q86U42 306 aaKnown RBP eCLIP10.71□□□□□ -0.7
SSBP1-213ENST00000496622 UNC13AQ9UPW8 1703 aa10.66□□□□□ -0.7
SSBP1-213ENST00000496622 PELP1Q8IZL8 1130 aaKnown RBP10.66□□□□□ -0.7
SSBP1-213ENST00000496622 SCRIBQ14160 1630 aa10.64□□□□□ -0.71
SSBP1-213ENST00000496622 CC2D2AQ9P2K1 1620 aa10.63□□□□□ -0.71
SSBP1-213ENST00000496622 OSCARQ8IYS5 282 aa10.62□□□□□ -0.71
SSBP1-213ENST00000496622 SLC24A1O60721 1099 aa10.6□□□□□ -0.71
SSBP1-213ENST00000496622 MYT1Q01538 1121 aa10.6□□□□□ -0.71
SSBP1-213ENST00000496622 SOCS7O14512 581 aa10.55□□□□□ -0.72
SSBP1-213ENST00000496622 BICRAQ9NZM4 1560 aa10.55□□□□□ -0.72
SSBP1-213ENST00000496622 FBLN2P98095 1184 aa10.51□□□□□ -0.73
SSBP1-213ENST00000496622 ZBTB12Q9Y330 459 aaPredicted RBP10.47□□□□□ -0.73
SSBP1-213ENST00000496622 LMTK3Q96Q04 1460 aa10.45□□□□□ -0.74
SSBP1-213ENST00000496622 PRKCSHP14314 528 aaPredicted RBP10.38□□□□□ -0.75
SSBP1-213ENST00000496622 FKBP8Q14318 412 aa10.38□□□□□ -0.75
SSBP1-213ENST00000496622 RSF1Q96T23 1441 aaPredicted RBP10.37□□□□□ -0.75
SSBP1-213ENST00000496622 ZNF692Q9BU19 519 aaPredicted RBP10.36□□□□□ -0.75
SSBP1-213ENST00000496622 SPDYE4A6NLX3 237 aa10.34□□□□□ -0.75
SSBP1-213ENST00000496622 ERCC6Q03468 1493 aa10.32□□□□□ -0.76
SSBP1-213ENST00000496622 TTBK1Q5TCY1 1321 aaPredicted RBP10.32□□□□□ -0.76
SSBP1-213ENST00000496622 SPDYE2BA6NHP3 402 aa10.3□□□□□ -0.76
SSBP1-213ENST00000496622 SPDYE6P0CI01 402 aa10.3□□□□□ -0.76
SSBP1-213ENST00000496622 SPDYE2Q495Y8 402 aa10.3□□□□□ -0.76
SSBP1-213ENST00000496622 RBM42Q9BTD8 480 aaKnown RBP10.3□□□□□ -0.76
SSBP1-213ENST00000496622 MROH2BQ7Z745 1585 aa10.29□□□□□ -0.76
SSBP1-213ENST00000496622 EIF4G1Q04637 1599 aaKnown RBP10.29□□□□□ -0.76
SSBP1-213ENST00000496622 FBXO41Q8TF61 875 aa10.28□□□□□ -0.76
SSBP1-213ENST00000496622 SSUH2Q9Y2M2 353 aa10.26□□□□□ -0.77
SSBP1-213ENST00000496622 ERCC6L2Q5T890 1561 aa10.24□□□□□ -0.77
SSBP1-213ENST00000496622 REM2Q8IYK8 340 aaPredicted RBP10.22□□□□□ -0.77
SSBP1-213ENST00000496622 AKT1S1Q96B36 256 aa10.2□□□□□ -0.78
SSBP1-213ENST00000496622 RIMBP3CA6NJZ7 1639 aa10.19□□□□□ -0.78
SSBP1-213ENST00000496622 RIMBP3BA6NNM3 1639 aa10.19□□□□□ -0.78
SSBP1-213ENST00000496622 RIMBP3Q9UFD9 1639 aa10.19□□□□□ -0.78
SSBP1-213ENST00000496622 WIZO95785 1651 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms