RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 MYT1Q01538 1121 aa8.79□□□□□ -1
VPS13D-213ENST00000613099 PELP1Q8IZL8 1130 aaKnown RBP8.74□□□□□ -1.01
VPS13D-213ENST00000613099 TTBK1Q5TCY1 1321 aaPredicted RBP8.19□□□□□ -1.1
VPS13D-213ENST00000613099 ERICH6Q7L0X2 663 aa7.91□□□□□ -1.14
VPS13D-213ENST00000613099 NISCHQ9Y2I1 1504 aa7.85□□□□□ -1.15
VPS13D-213ENST00000613099 CENPBP07199 599 aaPredicted RBP7.84□□□□□ -1.15
VPS13D-213ENST00000613099 ZEB1P37275 1124 aaPredicted RBP7.77□□□□□ -1.17
VPS13D-213ENST00000613099 CCER1Q8TC90 406 aaPredicted RBP7.73□□□□□ -1.17
VPS13D-213ENST00000613099 HRCP23327 699 aa7.64□□□□□ -1.19
VPS13D-213ENST00000613099 YTHDC1Q96MU7 727 aaKnown RBP7.61□□□□□ -1.19
VPS13D-213ENST00000613099 PCGF6Q9BYE7 350 aa7.58□□□□□ -1.2
VPS13D-213ENST00000613099 MYT1LQ9UL68 1186 aa7.41□□□□□ -1.22
VPS13D-213ENST00000613099 NEFLP07196 543 aa7.4□□□□□ -1.22
VPS13D-213ENST00000613099 GLIPR1L2Q4G1C9 344 aa7.37□□□□□ -1.23
VPS13D-213ENST00000613099 FAM9AQ8IZU1 332 aaPredicted RBP7.37□□□□□ -1.23
VPS13D-213ENST00000613099 ACIN1Q9UKV3 1341 aaKnown RBP7.33□□□□□ -1.24
VPS13D-213ENST00000613099 RANGAP1P46060 587 aaPredicted RBP7.31□□□□□ -1.24
VPS13D-213ENST00000613099 SLC24A1O60721 1099 aa7.3□□□□□ -1.24
VPS13D-213ENST00000613099 SUPT5HO00267 1087 aaKnown RBP7.29□□□□□ -1.24
VPS13D-213ENST00000613099 EHMT2Q96KQ7 1210 aa7.29□□□□□ -1.24
VPS13D-213ENST00000613099 RTL5Q5HYW3 569 aaPredicted RBP7.29□□□□□ -1.24
VPS13D-213ENST00000613099 BCL11AQ9H165 835 aa7.28□□□□□ -1.24
VPS13D-213ENST00000613099 CCDC180Q9P1Z9 1646 aa7.28□□□□□ -1.24
VPS13D-213ENST00000613099 GTF3C3Q9Y5Q9 886 aa7.28□□□□□ -1.24
VPS13D-213ENST00000613099 TRIM26Q12899 539 aaPredicted RBP7.26□□□□□ -1.25
VPS13D-213ENST00000613099 CLSPNQ9HAW4 1339 aa7.25□□□□□ -1.25
VPS13D-213ENST00000613099 DCAF8L2P0C7V8 631 aa7.21□□□□□ -1.26
VPS13D-213ENST00000613099 PPARGC1BQ86YN6 1023 aaKnown RBP7.2□□□□□ -1.26
VPS13D-213ENST00000613099 DAXXQ9UER7 740 aaPredicted RBP7.19□□□□□ -1.26
VPS13D-213ENST00000613099 MYO15BQ96JP2 1530 aa7.18□□□□□ -1.26
VPS13D-213ENST00000613099 SCAF1Q9H7N4 1312 aaKnown RBP7.18□□□□□ -1.26
VPS13D-213ENST00000613099 ANP32EQ9BTT0 268 aa7.17□□□□□ -1.26
VPS13D-213ENST00000613099 DIEXFQ68CQ4 756 aaKnown RBP7.16□□□□□ -1.26
VPS13D-213ENST00000613099 BAZ1BQ9UIG0 1483 aaKnown RBP7.16□□□□□ -1.26
VPS13D-213ENST00000613099 EIF5BO60841 1220 aaKnown RBP7.14□□□□□ -1.27
VPS13D-213ENST00000613099 CDK11AQ9UQ88 783 aaPredicted RBP7.08□□□□□ -1.28
VPS13D-213ENST00000613099 SHROOM4Q9ULL8 1493 aa7.08□□□□□ -1.28
VPS13D-213ENST00000613099 APLP2Q06481 763 aa7.05□□□□□ -1.28
VPS13D-213ENST00000613099 ZNF316A6NFI3 1004 aaPredicted RBP7.04□□□□□ -1.28
VPS13D-213ENST00000613099 PRKCSHP14314 528 aaPredicted RBP7.02□□□□□ -1.29
VPS13D-213ENST00000613099 DCAF1Q9Y4B6 1507 aa7.02□□□□□ -1.29
VPS13D-213ENST00000613099 ERICH6BQ5W0A0 696 aa7.01□□□□□ -1.29
VPS13D-213ENST00000613099 NEUROD1Q13562 356 aa6.99□□□□□ -1.29
VPS13D-213ENST00000613099 NCLP19338 710 aaKnown RBP6.96□□□□□ -1.29
VPS13D-213ENST00000613099 TNNT2P45379 298 aaPredicted RBP6.95□□□□□ -1.3
VPS13D-213ENST00000613099 ANP32AP39687 249 aaKnown RBP6.95□□□□□ -1.3
VPS13D-213ENST00000613099 BCANQ96GW7 911 aa6.85□□□□□ -1.31
VPS13D-213ENST00000613099 ZNF326Q5BKZ1 582 aaKnown RBP6.85□□□□□ -1.31
VPS13D-213ENST00000613099 CSRNP3Q8WYN3 585 aa6.84□□□□□ -1.31
VPS13D-213ENST00000613099 ABCC9O60706 1549 aa6.84□□□□□ -1.31
VPS13D-213ENST00000613099 DEKP35659 375 aaKnown RBP6.83□□□□□ -1.32
VPS13D-213ENST00000613099 ZBTB47Q9UFB7 747 aaPredicted RBP6.83□□□□□ -1.32
VPS13D-213ENST00000613099 ANP32BQ92688 251 aaKnown RBP6.82□□□□□ -1.32
VPS13D-213ENST00000613099 RSPH6AQ9H0K4 717 aa6.82□□□□□ -1.32
VPS13D-213ENST00000613099 RB1CC1Q8TDY2 1594 aa6.82□□□□□ -1.32
VPS13D-213ENST00000613099 NBR1Q14596 966 aa6.81□□□□□ -1.32
VPS13D-213ENST00000613099 PODXL2Q9NZ53 605 aa6.8□□□□□ -1.32
VPS13D-213ENST00000613099 TRIM44Q96DX7 344 aaPredicted RBP6.79□□□□□ -1.32
VPS13D-213ENST00000613099 LOC105371045A0A1W2PR82 267 aa6.79□□□□□ -1.32
VPS13D-213ENST00000613099 NACADO15069 1562 aa6.78□□□□□ -1.32
VPS13D-213ENST00000613099 CHIC1Q5VXU3 224 aa6.78□□□□□ -1.32
VPS13D-213ENST00000613099 PKNOX2Q96KN3 472 aa6.78□□□□□ -1.32
VPS13D-213ENST00000613099 TRIM41Q8WV44 630 aa6.77□□□□□ -1.33
VPS13D-213ENST00000613099 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.77□□□□□ -1.33
VPS13D-213ENST00000613099 FKBP8Q14318 412 aa6.77□□□□□ -1.33
VPS13D-213ENST00000613099 NEFMP07197 916 aa6.76□□□□□ -1.33
VPS13D-213ENST00000613099 PTMSP20962 102 aa6.75□□□□□ -1.33
VPS13D-213ENST00000613099 HSP90AA1P07900 732 aaKnown RBP6.75□□□□□ -1.33
VPS13D-213ENST00000613099 PPM1GO15355 546 aaPredicted RBP6.73□□□□□ -1.33
VPS13D-213ENST00000613099 CDK11BP21127 795 aaKnown RBP6.73□□□□□ -1.33
VPS13D-213ENST00000613099 ANP32CO43423 234 aa6.72□□□□□ -1.33
VPS13D-213ENST00000613099 NOP58Q9Y2X3 529 aaKnown RBP6.72□□□□□ -1.33
VPS13D-213ENST00000613099 UBE2Q2Q8WVN8 375 aa6.71□□□□□ -1.34
VPS13D-213ENST00000613099 NAP1L5Q96NT1 182 aaPredicted RBP6.7□□□□□ -1.34
VPS13D-213ENST00000613099 DDRGK1Q96HY6 314 aa6.7□□□□□ -1.34
VPS13D-213ENST00000613099 ANO8Q9HCE9 1232 aaPredicted RBP6.7□□□□□ -1.34
VPS13D-213ENST00000613099 RBM19Q9Y4C8 960 aaKnown RBP6.69□□□□□ -1.34
VPS13D-213ENST00000613099 EEA1Q15075 1411 aa6.69□□□□□ -1.34
VPS13D-213ENST00000613099 VSIG10Q8N0Z9 540 aa6.69□□□□□ -1.34
VPS13D-213ENST00000613099 RTN4Q9NQC3 1192 aaKnown RBP6.68□□□□□ -1.34
VPS13D-213ENST00000613099 SUPT16HQ9Y5B9 1047 aaKnown RBP6.68□□□□□ -1.34
VPS13D-213ENST00000613099 HSP90AA2PQ14568 343 aaPredicted RBP6.68□□□□□ -1.34
VPS13D-213ENST00000613099 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.67□□□□□ -1.34
VPS13D-213ENST00000613099 TSHZ2Q9NRE2 1034 aa6.67□□□□□ -1.34
VPS13D-213ENST00000613099 CNGB1Q14028 1251 aaPredicted RBP6.67□□□□□ -1.34
VPS13D-213ENST00000613099 MIER1Q8N108 512 aa6.66□□□□□ -1.34
VPS13D-213ENST00000613099 CCDC136Q96JN2 1154 aa6.66□□□□□ -1.34
VPS13D-213ENST00000613099 POLR3GLQ9BT43 218 aa6.65□□□□□ -1.34
VPS13D-213ENST00000613099 USP35Q9P2H5 1018 aa6.64□□□□□ -1.35
VPS13D-213ENST00000613099 L1TD1Q5T7N2 865 aaKnown RBP6.64□□□□□ -1.35
VPS13D-213ENST00000613099 NPM2Q86SE8 214 aaKnown RBP6.63□□□□□ -1.35
VPS13D-213ENST00000613099 PNNQ9H307 717 aaKnown RBP6.62□□□□□ -1.35
VPS13D-213ENST00000613099 UBTFP17480 764 aaKnown RBP6.61□□□□□ -1.35
VPS13D-213ENST00000613099 HNRNPUL2Q1KMD3 747 aaKnown RBP6.6□□□□□ -1.35
VPS13D-213ENST00000613099 FANCIQ9NVI1 1328 aa6.59□□□□□ -1.35
VPS13D-213ENST00000613099 BECN1Q14457 450 aa6.59□□□□□ -1.35
VPS13D-213ENST00000613099 ITGAEP38570 1179 aa6.59□□□□□ -1.35
VPS13D-213ENST00000613099 PDE4CQ08493 712 aa6.59□□□□□ -1.35
VPS13D-213ENST00000613099 UPF2Q9HAU5 1272 aaKnown RBP6.59□□□□□ -1.35
VPS13D-213ENST00000613099 PPP4R2Q9NY27 417 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms