RNA–Protein interactions for RNA: ENST00000461433.1

SSBP1-202, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 1 (best)

Gene SSBP1, Length 1,694 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-202ENST00000461433 NISCHQ9Y2I1 1504 aa27.03■■□□□ 1.92
SSBP1-202ENST00000461433 CCDC180Q9P1Z9 1646 aa23.9■■□□□ 1.42
SSBP1-202ENST00000461433 ABCC9O60706 1549 aa23.11■■□□□ 1.29
SSBP1-202ENST00000461433 ZCCHC6Q5VYS8 1495 aaKnown RBP22.57■■□□□ 1.2
SSBP1-202ENST00000461433 DCAF8L2P0C7V8 631 aa22.42■■□□□ 1.18
SSBP1-202ENST00000461433 NACADO15069 1562 aa22.39■■□□□ 1.18
SSBP1-202ENST00000461433 DCAF1Q9Y4B6 1507 aa22.37■■□□□ 1.17
SSBP1-202ENST00000461433 MYO15BQ96JP2 1530 aa22.36■■□□□ 1.17
SSBP1-202ENST00000461433 RB1CC1Q8TDY2 1594 aa22.34■■□□□ 1.17
SSBP1-202ENST00000461433 UNC13AQ9UPW8 1703 aa21.93■■□□□ 1.1
SSBP1-202ENST00000461433 SCRIBQ14160 1630 aa21.82■■□□□ 1.08
SSBP1-202ENST00000461433 BICRAQ9NZM4 1560 aa21.73■■□□□ 1.07
SSBP1-202ENST00000461433 PABPN1Q86U42 306 aaKnown RBP eCLIP21.66■■□□□ 1.06
SSBP1-202ENST00000461433 SHROOM4Q9ULL8 1493 aa21.49■■□□□ 1.03
SSBP1-202ENST00000461433 EIF4G1Q04637 1599 aaKnown RBP21.09■□□□□ 0.97
SSBP1-202ENST00000461433 CECR2Q9BXF3 1484 aa21.05■□□□□ 0.96
SSBP1-202ENST00000461433 DNAJC5BQ9UF47 199 aa21.03■□□□□ 0.96
SSBP1-202ENST00000461433 CC2D2AQ9P2K1 1620 aa20.94■□□□□ 0.94
SSBP1-202ENST00000461433 SMARCA4P51532 1647 aa20.92■□□□□ 0.94
SSBP1-202ENST00000461433 BAZ1AQ9NRL2 1556 aaPredicted RBP20.9■□□□□ 0.94
SSBP1-202ENST00000461433 MROH2BQ7Z745 1585 aa20.85■□□□□ 0.93
SSBP1-202ENST00000461433 ATAD2BQ9ULI0 1458 aa20.73■□□□□ 0.91
SSBP1-202ENST00000461433 PEG3Q9GZU2 1588 aa20.72■□□□□ 0.91
SSBP1-202ENST00000461433 RSF1Q96T23 1441 aaPredicted RBP20.7■□□□□ 0.91
SSBP1-202ENST00000461433 SMARCA2P51531 1590 aa20.69■□□□□ 0.9
SSBP1-202ENST00000461433 NCAPD3P42695 1498 aa20.68■□□□□ 0.9
SSBP1-202ENST00000461433 WIZO95785 1651 aa20.64■□□□□ 0.9
SSBP1-202ENST00000461433 HMGXB3Q12766 1538 aa20.58■□□□□ 0.89
SSBP1-202ENST00000461433 BAZ1BQ9UIG0 1483 aaKnown RBP20.54■□□□□ 0.88
SSBP1-202ENST00000461433 TOP2AP11388 1531 aaKnown RBP20.41■□□□□ 0.86
SSBP1-202ENST00000461433 SUPT5HO00267 1087 aaKnown RBP20.35■□□□□ 0.85
SSBP1-202ENST00000461433 CCDC88BA6NC98 1476 aa20.19■□□□□ 0.82
SSBP1-202ENST00000461433 NESP48681 1621 aa20.12■□□□□ 0.81
SSBP1-202ENST00000461433 CADPSQ9ULU8 1353 aa20.07■□□□□ 0.8
SSBP1-202ENST00000461433 LAMC3Q9Y6N6 1575 aa20.07■□□□□ 0.8
SSBP1-202ENST00000461433 CFTRP13569 1480 aa20.02■□□□□ 0.8
SSBP1-202ENST00000461433 PRDM2Q13029 1718 aa19.91■□□□□ 0.78
SSBP1-202ENST00000461433 AEBP2Q6ZN18 517 aaPredicted RBP19.91■□□□□ 0.78
SSBP1-202ENST00000461433 PDS5BQ9NTI5 1447 aa19.9■□□□□ 0.78
SSBP1-202ENST00000461433 KIF21AQ7Z4S6 1674 aa19.89■□□□□ 0.77
SSBP1-202ENST00000461433 ERCC6Q03468 1493 aa19.86■□□□□ 0.77
SSBP1-202ENST00000461433 FANCD2Q9BXW9 1451 aa19.84■□□□□ 0.77
SSBP1-202ENST00000461433 CEP164Q9UPV0 1460 aa19.77■□□□□ 0.76
SSBP1-202ENST00000461433 THOC2Q8NI27 1593 aaKnown RBP19.74■□□□□ 0.75
SSBP1-202ENST00000461433 MRC2Q9UBG0 1479 aa19.69■□□□□ 0.74
SSBP1-202ENST00000461433 URB2Q14146 1524 aaKnown RBP19.65■□□□□ 0.74
SSBP1-202ENST00000461433 WDR62O43379 1518 aa19.65■□□□□ 0.74
SSBP1-202ENST00000461433 CUX2O14529 1486 aa19.57■□□□□ 0.72
SSBP1-202ENST00000461433 TOPBP1Q92547 1522 aa19.56■□□□□ 0.72
SSBP1-202ENST00000461433 DNMBPQ6XZF7 1577 aa19.56■□□□□ 0.72
SSBP1-202ENST00000461433 ABCC8Q09428 1581 aa19.55■□□□□ 0.72
SSBP1-202ENST00000461433 CUX1P39880 1505 aa19.54■□□□□ 0.72
SSBP1-202ENST00000461433 WRNQ14191 1432 aaPredicted RBP eCLIP19.48■□□□□ 0.711e-7■□□□□ 10.2
SSBP1-202ENST00000461433 SYNJ1O43426 1573 aa19.45■□□□□ 0.7
SSBP1-202ENST00000461433 TOP2BQ02880 1626 aa19.43■□□□□ 0.7
SSBP1-202ENST00000461433 BIVM-ERCC5R4GMW8 1640 aa19.43■□□□□ 0.7
SSBP1-202ENST00000461433 POLA1P09884 1462 aaPredicted RBP19.42■□□□□ 0.7
SSBP1-202ENST00000461433 FGD5Q6ZNL6 1462 aa19.41■□□□□ 0.7
SSBP1-202ENST00000461433 TARBP1Q13395 1621 aaKnown RBP19.36■□□□□ 0.69
SSBP1-202ENST00000461433 IFT140Q96RY7 1462 aa19.35■□□□□ 0.69
SSBP1-202ENST00000461433 RAD54L2Q9Y4B4 1467 aa19.34■□□□□ 0.69
SSBP1-202ENST00000461433 SOGA1O94964 1423 aa19.33■□□□□ 0.68
SSBP1-202ENST00000461433 ZNF608Q9ULD9 1512 aaPredicted RBP19.28■□□□□ 0.68
SSBP1-202ENST00000461433 WDR97A6NE52 1622 aa19.27■□□□□ 0.67
SSBP1-202ENST00000461433 ABCA10Q8WWZ4 1543 aa19.23■□□□□ 0.67
SSBP1-202ENST00000461433 EIF4G3O43432 1585 aaKnown RBP19.2■□□□□ 0.66
SSBP1-202ENST00000461433 AQRO60306 1485 aaKnown RBP eCLIP19.2■□□□□ 0.66
SSBP1-202ENST00000461433 TDRD9Q8NDG6 1382 aaKnown RBP19.2■□□□□ 0.66
SSBP1-202ENST00000461433 TRIM41Q8WV44 630 aa19.19■□□□□ 0.66
SSBP1-202ENST00000461433 CHIC1Q5VXU3 224 aa19.18■□□□□ 0.66
SSBP1-202ENST00000461433 ABCA5Q8WWZ7 1642 aa19.15■□□□□ 0.66
SSBP1-202ENST00000461433 GAPVD1Q14C86 1478 aa19.11■□□□□ 0.65
SSBP1-202ENST00000461433 PBRM1Q86U86 1689 aa19.08■□□□□ 0.64
SSBP1-202ENST00000461433 GRIN2BQ13224 1484 aa19.06■□□□□ 0.64
SSBP1-202ENST00000461433 KIF27Q86VH2 1401 aa19.04■□□□□ 0.64
SSBP1-202ENST00000461433 RUSC2Q8N2Y8 1516 aa19.02■□□□□ 0.64
SSBP1-202ENST00000461433 SNAPC4Q5SXM2 1469 aa19.01■□□□□ 0.63
SSBP1-202ENST00000461433 ERICH3Q5RHP9 1530 aa19■□□□□ 0.63
SSBP1-202ENST00000461433 MAGI1Q96QZ7 1491 aaPredicted RBP18.98■□□□□ 0.63
SSBP1-202ENST00000461433 IGF1RP08069 1367 aa18.97■□□□□ 0.63
SSBP1-202ENST00000461433 DNAJC5Q9H3Z4 198 aa18.94■□□□□ 0.62
SSBP1-202ENST00000461433 ADAMTS12P58397 1594 aa18.93■□□□□ 0.62
SSBP1-202ENST00000461433 CHD1O14646 1710 aa18.93■□□□□ 0.62
SSBP1-202ENST00000461433 SYNJ2O15056 1496 aa18.92■□□□□ 0.62
SSBP1-202ENST00000461433 FHAD1B1AJZ9 1412 aa18.89■□□□□ 0.61
SSBP1-202ENST00000461433 CUL7Q14999 1698 aa18.88■□□□□ 0.61
SSBP1-202ENST00000461433 FBLN2P98095 1184 aa18.86■□□□□ 0.61
SSBP1-202ENST00000461433 CHMP7Q8WUX9 453 aaPredicted RBP18.86■□□□□ 0.61
SSBP1-202ENST00000461433 EEA1Q15075 1411 aa18.85■□□□□ 0.61
SSBP1-202ENST00000461433 CARMIL1Q5VZK9 1371 aa18.84■□□□□ 0.61
SSBP1-202ENST00000461433 GRIN2AQ12879 1464 aa18.83■□□□□ 0.61
SSBP1-202ENST00000461433 OSCARQ8IYS5 282 aa18.82■□□□□ 0.6
SSBP1-202ENST00000461433 CSRNP3Q8WYN3 585 aa18.81■□□□□ 0.6
SSBP1-202ENST00000461433 FAM9AQ8IZU1 332 aaPredicted RBP18.79■□□□□ 0.6
SSBP1-202ENST00000461433 PRXQ9BXM0 1461 aa18.78■□□□□ 0.6
SSBP1-202ENST00000461433 RAPGEF2Q9Y4G8 1499 aa18.75■□□□□ 0.59
SSBP1-202ENST00000461433 CEP170Q5SW79 1584 aa18.75■□□□□ 0.59
SSBP1-202ENST00000461433 NUP160Q12769 1436 aa18.74■□□□□ 0.59
SSBP1-202ENST00000461433 CLASP1Q7Z460 1538 aa18.72■□□□□ 0.59
SSBP1-202ENST00000461433 KIF21BO75037 1637 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms