RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 NISCHQ9Y2I1 1504 aa11.56□□□□□ -0.56
VPS13D-209ENST00000487188 HRCP23327 699 aa10.44□□□□□ -0.74
VPS13D-209ENST00000487188 PELP1Q8IZL8 1130 aaKnown RBP10.35□□□□□ -0.75
VPS13D-209ENST00000487188 CCDC180Q9P1Z9 1646 aa10.35□□□□□ -0.75
VPS13D-209ENST00000487188 PCGF6Q9BYE7 350 aa10.27□□□□□ -0.76
VPS13D-209ENST00000487188 SUPT5HO00267 1087 aaKnown RBP10.27□□□□□ -0.77
VPS13D-209ENST00000487188 PPARGC1BQ86YN6 1023 aaKnown RBP10.22□□□□□ -0.77
VPS13D-209ENST00000487188 SHROOM4Q9ULL8 1493 aa10.22□□□□□ -0.77
VPS13D-209ENST00000487188 ABCC9O60706 1549 aa10.05□□□□□ -0.8
VPS13D-209ENST00000487188 MYT1Q01538 1121 aa10.02□□□□□ -0.8
VPS13D-209ENST00000487188 CHIC1Q5VXU3 224 aa9.97□□□□□ -0.81
VPS13D-209ENST00000487188 MYO15BQ96JP2 1530 aa9.94□□□□□ -0.82
VPS13D-209ENST00000487188 ZEB1P37275 1124 aaPredicted RBP9.91□□□□□ -0.82
VPS13D-209ENST00000487188 SCAF1Q9H7N4 1312 aaKnown RBP9.9□□□□□ -0.83
VPS13D-209ENST00000487188 TRIM26Q12899 539 aaPredicted RBP9.88□□□□□ -0.83
VPS13D-209ENST00000487188 DCAF1Q9Y4B6 1507 aa9.83□□□□□ -0.84
VPS13D-209ENST00000487188 LOC105371045A0A1W2PR82 267 aa9.78□□□□□ -0.84
VPS13D-209ENST00000487188 CENPBP07199 599 aaPredicted RBP9.73□□□□□ -0.85
VPS13D-209ENST00000487188 ACIN1Q9UKV3 1341 aaKnown RBP9.7□□□□□ -0.86
VPS13D-209ENST00000487188 NACADO15069 1562 aa9.69□□□□□ -0.86
VPS13D-209ENST00000487188 RB1CC1Q8TDY2 1594 aa9.69□□□□□ -0.86
VPS13D-209ENST00000487188 DCAF8L2P0C7V8 631 aa9.69□□□□□ -0.86
VPS13D-209ENST00000487188 GTF3C3Q9Y5Q9 886 aa9.66□□□□□ -0.86
VPS13D-209ENST00000487188 ZCCHC6Q5VYS8 1495 aaKnown RBP9.64□□□□□ -0.87
VPS13D-209ENST00000487188 NEUROD1Q13562 356 aa9.63□□□□□ -0.87
VPS13D-209ENST00000487188 UNC13AQ9UPW8 1703 aa9.59□□□□□ -0.87
VPS13D-209ENST00000487188 CCER1Q8TC90 406 aaPredicted RBP9.56□□□□□ -0.88
VPS13D-209ENST00000487188 EHMT2Q96KQ7 1210 aa9.56□□□□□ -0.88
VPS13D-209ENST00000487188 DIEXFQ68CQ4 756 aaKnown RBP9.53□□□□□ -0.88
VPS13D-209ENST00000487188 FAM9AQ8IZU1 332 aaPredicted RBP9.53□□□□□ -0.88
VPS13D-209ENST00000487188 YTHDC1Q96MU7 727 aaKnown RBP9.5□□□□□ -0.89
VPS13D-209ENST00000487188 BICRAQ9NZM4 1560 aa9.49□□□□□ -0.89
VPS13D-209ENST00000487188 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.48□□□□□ -0.89
VPS13D-209ENST00000487188 TRIM41Q8WV44 630 aa9.47□□□□□ -0.89
VPS13D-209ENST00000487188 TTBK1Q5TCY1 1321 aaPredicted RBP9.36□□□□□ -0.91
VPS13D-209ENST00000487188 SCRIBQ14160 1630 aa9.36□□□□□ -0.91
VPS13D-209ENST00000487188 PABPN1Q86U42 306 aaKnown RBP eCLIP9.34□□□□□ -0.91
VPS13D-209ENST00000487188 DNAJC5BQ9UF47 199 aa9.32□□□□□ -0.92
VPS13D-209ENST00000487188 ZNF316A6NFI3 1004 aaPredicted RBP9.31□□□□□ -0.92
VPS13D-209ENST00000487188 BCL11AQ9H165 835 aa9.26□□□□□ -0.93
VPS13D-209ENST00000487188 ANP32EQ9BTT0 268 aa9.22□□□□□ -0.93
VPS13D-209ENST00000487188 MIER1Q8N108 512 aa9.21□□□□□ -0.93
VPS13D-209ENST00000487188 EIF4G1Q04637 1599 aaKnown RBP9.19□□□□□ -0.94
VPS13D-209ENST00000487188 CLSPNQ9HAW4 1339 aa9.17□□□□□ -0.94
VPS13D-209ENST00000487188 CC2D2AQ9P2K1 1620 aa9.16□□□□□ -0.94
VPS13D-209ENST00000487188 SUPT16HQ9Y5B9 1047 aaKnown RBP9.12□□□□□ -0.95
VPS13D-209ENST00000487188 HNRNPUL2Q1KMD3 747 aaKnown RBP9.09□□□□□ -0.95
VPS13D-209ENST00000487188 CSRNP3Q8WYN3 585 aa9.08□□□□□ -0.96
VPS13D-209ENST00000487188 TSHZ2Q9NRE2 1034 aa9.08□□□□□ -0.96
VPS13D-209ENST00000487188 ERICH6Q7L0X2 663 aa9.07□□□□□ -0.96
VPS13D-209ENST00000487188 BCANQ96GW7 911 aa9.07□□□□□ -0.96
VPS13D-209ENST00000487188 RSF1Q96T23 1441 aaPredicted RBP9.06□□□□□ -0.96
VPS13D-209ENST00000487188 CECR2Q9BXF3 1484 aa9.04□□□□□ -0.96
VPS13D-209ENST00000487188 NEFLP07196 543 aa9.04□□□□□ -0.96
VPS13D-209ENST00000487188 UBTFP17480 764 aaKnown RBP9.04□□□□□ -0.96
VPS13D-209ENST00000487188 APLP2Q06481 763 aa9.02□□□□□ -0.97
VPS13D-209ENST00000487188 SMARCA4P51532 1647 aa8.99□□□□□ -0.97
VPS13D-209ENST00000487188 CEP162Q5TB80 1403 aa8.98□□□□□ -0.97
VPS13D-209ENST00000487188 FKBP8Q14318 412 aa8.96□□□□□ -0.97
VPS13D-209ENST00000487188 PEG3Q9GZU2 1588 aa8.96□□□□□ -0.97
VPS13D-209ENST00000487188 NCAPD3P42695 1498 aa8.95□□□□□ -0.98
VPS13D-209ENST00000487188 WRNQ14191 1432 aaPredicted RBP eCLIP8.95□□□□□ -0.98
VPS13D-209ENST00000487188 BAZ1AQ9NRL2 1556 aaPredicted RBP8.94□□□□□ -0.98
VPS13D-209ENST00000487188 ATAD2BQ9ULI0 1458 aa8.93□□□□□ -0.98
VPS13D-209ENST00000487188 HMGXB3Q12766 1538 aa8.92□□□□□ -0.98
VPS13D-209ENST00000487188 MROH2BQ7Z745 1585 aa8.91□□□□□ -0.98
VPS13D-209ENST00000487188 SMARCA2P51531 1590 aa8.9□□□□□ -0.98
VPS13D-209ENST00000487188 RBM19Q9Y4C8 960 aaKnown RBP8.9□□□□□ -0.98
VPS13D-209ENST00000487188 PRKCSHP14314 528 aaPredicted RBP8.88□□□□□ -0.99
VPS13D-209ENST00000487188 TNIKQ9UKE5 1360 aa8.88□□□□□ -0.99
VPS13D-209ENST00000487188 RANGAP1P46060 587 aaPredicted RBP8.88□□□□□ -0.99
VPS13D-209ENST00000487188 ITGAEP38570 1179 aa8.87□□□□□ -0.99
VPS13D-209ENST00000487188 MYT1LQ9UL68 1186 aa8.83□□□□□ -1
VPS13D-209ENST00000487188 CDK11AQ9UQ88 783 aaPredicted RBP8.83□□□□□ -1
VPS13D-209ENST00000487188 WIZO95785 1651 aa8.82□□□□□ -1
VPS13D-209ENST00000487188 BAZ1BQ9UIG0 1483 aaKnown RBP8.81□□□□□ -1
VPS13D-209ENST00000487188 GOLGA3Q08378 1498 aa8.8□□□□□ -1
VPS13D-209ENST00000487188 KCNH8Q96L42 1107 aa8.78□□□□□ -1
VPS13D-209ENST00000487188 SOGA1O94964 1423 aa8.78□□□□□ -1
VPS13D-209ENST00000487188 EEA1Q15075 1411 aa8.78□□□□□ -1
VPS13D-209ENST00000487188 TRIM52Q96A61 297 aa8.78□□□□□ -1
VPS13D-209ENST00000487188 CCDC88BA6NC98 1476 aa8.78□□□□□ -1
VPS13D-209ENST00000487188 ABCC8Q09428 1581 aa8.77□□□□□ -1.01
VPS13D-209ENST00000487188 DEKP35659 375 aaKnown RBP8.76□□□□□ -1.01
VPS13D-209ENST00000487188 DDX10Q13206 875 aaKnown RBP8.76□□□□□ -1.01
VPS13D-209ENST00000487188 CLIP1P30622 1438 aa8.76□□□□□ -1.01
VPS13D-209ENST00000487188 ANP32CO43423 234 aa8.75□□□□□ -1.01
VPS13D-209ENST00000487188 RTL5Q5HYW3 569 aaPredicted RBP8.74□□□□□ -1.01
VPS13D-209ENST00000487188 DHX57Q6P158 1386 aaKnown RBP8.74□□□□□ -1.01
VPS13D-209ENST00000487188 MSH5O43196 834 aa8.73□□□□□ -1.01
VPS13D-209ENST00000487188 NESP48681 1621 aa8.73□□□□□ -1.01
VPS13D-209ENST00000487188 NBR1Q14596 966 aa8.72□□□□□ -1.01
VPS13D-209ENST00000487188 FANCIQ9NVI1 1328 aa8.72□□□□□ -1.01
VPS13D-209ENST00000487188 LAMC3Q9Y6N6 1575 aa8.71□□□□□ -1.01
VPS13D-209ENST00000487188 TOP2AP11388 1531 aaKnown RBP8.71□□□□□ -1.01
VPS13D-209ENST00000487188 IRX6P78412 446 aaPredicted RBP8.71□□□□□ -1.01
VPS13D-209ENST00000487188 VPS8Q8N3P4 1428 aa8.71□□□□□ -1.02
VPS13D-209ENST00000487188 CEP164Q9UPV0 1460 aa8.68□□□□□ -1.02
VPS13D-209ENST00000487188 RUSC2Q8N2Y8 1516 aa8.68□□□□□ -1.02
VPS13D-209ENST00000487188 THOC2Q8NI27 1593 aaKnown RBP8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms