RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 NISCHQ9Y2I1 1504 aa12.5□□□□□ -0.41
VPS13D-202ENST00000460333 CCDC180Q9P1Z9 1646 aa10.78□□□□□ -0.68
VPS13D-202ENST00000460333 DCAF8L2P0C7V8 631 aa10.76□□□□□ -0.69
VPS13D-202ENST00000460333 SHROOM4Q9ULL8 1493 aa10.52□□□□□ -0.73
VPS13D-202ENST00000460333 ZCCHC6Q5VYS8 1495 aaKnown RBP10.48□□□□□ -0.73
VPS13D-202ENST00000460333 SUPT5HO00267 1087 aaKnown RBP10.32□□□□□ -0.76
VPS13D-202ENST00000460333 DCAF1Q9Y4B6 1507 aa10.3□□□□□ -0.76
VPS13D-202ENST00000460333 ABCC9O60706 1549 aa10.25□□□□□ -0.77
VPS13D-202ENST00000460333 PELP1Q8IZL8 1130 aaKnown RBP10.15□□□□□ -0.79
VPS13D-202ENST00000460333 MYO15BQ96JP2 1530 aa10.13□□□□□ -0.79
VPS13D-202ENST00000460333 NACADO15069 1562 aa10.12□□□□□ -0.79
VPS13D-202ENST00000460333 MYT1Q01538 1121 aa10.09□□□□□ -0.79
VPS13D-202ENST00000460333 RB1CC1Q8TDY2 1594 aa10.04□□□□□ -0.8
VPS13D-202ENST00000460333 SCRIBQ14160 1630 aa10.02□□□□□ -0.81
VPS13D-202ENST00000460333 CHIC1Q5VXU3 224 aa9.78□□□□□ -0.84
VPS13D-202ENST00000460333 PABPN1Q86U42 306 aaKnown RBP eCLIP9.77□□□□□ -0.85
VPS13D-202ENST00000460333 RSF1Q96T23 1441 aaPredicted RBP9.77□□□□□ -0.85
VPS13D-202ENST00000460333 TRIM41Q8WV44 630 aa9.72□□□□□ -0.85
VPS13D-202ENST00000460333 BAZ1AQ9NRL2 1556 aaPredicted RBP9.72□□□□□ -0.85
VPS13D-202ENST00000460333 CECR2Q9BXF3 1484 aa9.67□□□□□ -0.86
VPS13D-202ENST00000460333 ZEB1P37275 1124 aaPredicted RBP9.66□□□□□ -0.86
VPS13D-202ENST00000460333 MROH2BQ7Z745 1585 aa9.62□□□□□ -0.87
VPS13D-202ENST00000460333 CENPBP07199 599 aaPredicted RBP9.6□□□□□ -0.87
VPS13D-202ENST00000460333 FAM9AQ8IZU1 332 aaPredicted RBP9.57□□□□□ -0.88
VPS13D-202ENST00000460333 SMARCA4P51532 1647 aa9.55□□□□□ -0.88
VPS13D-202ENST00000460333 PCGF6Q9BYE7 350 aa9.53□□□□□ -0.88
VPS13D-202ENST00000460333 WIZO95785 1651 aa9.53□□□□□ -0.88
VPS13D-202ENST00000460333 HRCP23327 699 aa9.52□□□□□ -0.88
VPS13D-202ENST00000460333 TOP2AP11388 1531 aaKnown RBP9.51□□□□□ -0.89
VPS13D-202ENST00000460333 UNC13AQ9UPW8 1703 aa9.5□□□□□ -0.89
VPS13D-202ENST00000460333 SMARCA2P51531 1590 aa9.5□□□□□ -0.89
VPS13D-202ENST00000460333 BAZ1BQ9UIG0 1483 aaKnown RBP9.49□□□□□ -0.89
VPS13D-202ENST00000460333 BICRAQ9NZM4 1560 aa9.47□□□□□ -0.89
VPS13D-202ENST00000460333 EHMT2Q96KQ7 1210 aa9.43□□□□□ -0.9
VPS13D-202ENST00000460333 CCDC88BA6NC98 1476 aa9.43□□□□□ -0.9
VPS13D-202ENST00000460333 LOC105371045A0A1W2PR82 267 aa9.43□□□□□ -0.9
VPS13D-202ENST00000460333 ATAD2BQ9ULI0 1458 aa9.41□□□□□ -0.9
VPS13D-202ENST00000460333 UBTFP17480 764 aaKnown RBP9.36□□□□□ -0.91
VPS13D-202ENST00000460333 CCER1Q8TC90 406 aaPredicted RBP9.35□□□□□ -0.91
VPS13D-202ENST00000460333 PEG3Q9GZU2 1588 aa9.34□□□□□ -0.91
VPS13D-202ENST00000460333 EEA1Q15075 1411 aa9.33□□□□□ -0.92
VPS13D-202ENST00000460333 EIF4G1Q04637 1599 aaKnown RBP9.33□□□□□ -0.92
VPS13D-202ENST00000460333 ERICH6Q7L0X2 663 aa9.32□□□□□ -0.92
VPS13D-202ENST00000460333 WRNQ14191 1432 aaPredicted RBP eCLIP9.32□□□□□ -0.92
VPS13D-202ENST00000460333 NCAPD3P42695 1498 aa9.32□□□□□ -0.92
VPS13D-202ENST00000460333 APLP2Q06481 763 aa9.31□□□□□ -0.92
VPS13D-202ENST00000460333 CSRNP3Q8WYN3 585 aa9.3□□□□□ -0.92
VPS13D-202ENST00000460333 TTBK1Q5TCY1 1321 aaPredicted RBP9.3□□□□□ -0.92
VPS13D-202ENST00000460333 HMGXB3Q12766 1538 aa9.28□□□□□ -0.92
VPS13D-202ENST00000460333 TRIM26Q12899 539 aaPredicted RBP9.27□□□□□ -0.93
VPS13D-202ENST00000460333 ABCC8Q09428 1581 aa9.24□□□□□ -0.93
VPS13D-202ENST00000460333 CADPSQ9ULU8 1353 aa9.18□□□□□ -0.94
VPS13D-202ENST00000460333 GOLGA3Q08378 1498 aa9.18□□□□□ -0.94
VPS13D-202ENST00000460333 CEP164Q9UPV0 1460 aa9.16□□□□□ -0.94
VPS13D-202ENST00000460333 RANGAP1P46060 587 aaPredicted RBP9.16□□□□□ -0.94
VPS13D-202ENST00000460333 TNIKQ9UKE5 1360 aa9.15□□□□□ -0.94
VPS13D-202ENST00000460333 CC2D2AQ9P2K1 1620 aa9.15□□□□□ -0.94
VPS13D-202ENST00000460333 SOGA1O94964 1423 aa9.15□□□□□ -0.95
VPS13D-202ENST00000460333 KIF27Q86VH2 1401 aa9.14□□□□□ -0.95
VPS13D-202ENST00000460333 CFTRP13569 1480 aa9.14□□□□□ -0.95
VPS13D-202ENST00000460333 NEFLP07196 543 aa9.13□□□□□ -0.95
VPS13D-202ENST00000460333 CEP162Q5TB80 1403 aa9.1□□□□□ -0.95
VPS13D-202ENST00000460333 PDS5BQ9NTI5 1447 aa9.09□□□□□ -0.95
VPS13D-202ENST00000460333 PPARGC1BQ86YN6 1023 aaKnown RBP9.08□□□□□ -0.96
VPS13D-202ENST00000460333 TOP2BQ02880 1626 aa9.07□□□□□ -0.96
VPS13D-202ENST00000460333 SYNJ1O43426 1573 aa9.07□□□□□ -0.96
VPS13D-202ENST00000460333 CLIP1P30622 1438 aa9.06□□□□□ -0.96
VPS13D-202ENST00000460333 FANCD2Q9BXW9 1451 aa9.06□□□□□ -0.96
VPS13D-202ENST00000460333 YTHDC1Q96MU7 727 aaKnown RBP9.05□□□□□ -0.96
VPS13D-202ENST00000460333 CUX2O14529 1486 aa9.04□□□□□ -0.96
VPS13D-202ENST00000460333 ATP1B4Q9UN42 357 aaPredicted RBP9.03□□□□□ -0.96
VPS13D-202ENST00000460333 RUSC2Q8N2Y8 1516 aa9.02□□□□□ -0.97
VPS13D-202ENST00000460333 KIF21BO75037 1637 aa9.01□□□□□ -0.97
VPS13D-202ENST00000460333 BIVM-ERCC5R4GMW8 1640 aa9□□□□□ -0.97
VPS13D-202ENST00000460333 CUX1P39880 1505 aa9□□□□□ -0.97
VPS13D-202ENST00000460333 LAMC3Q9Y6N6 1575 aa8.99□□□□□ -0.97
VPS13D-202ENST00000460333 CARMIL1Q5VZK9 1371 aa8.99□□□□□ -0.97
VPS13D-202ENST00000460333 ACIN1Q9UKV3 1341 aaKnown RBP8.98□□□□□ -0.97
VPS13D-202ENST00000460333 FGD5Q6ZNL6 1462 aa8.97□□□□□ -0.97
VPS13D-202ENST00000460333 GTF3C3Q9Y5Q9 886 aa8.97□□□□□ -0.97
VPS13D-202ENST00000460333 ERICH3Q5RHP9 1530 aa8.96□□□□□ -0.97
VPS13D-202ENST00000460333 DIEXFQ68CQ4 756 aaKnown RBP8.96□□□□□ -0.98
VPS13D-202ENST00000460333 RAPGEF2Q9Y4G8 1499 aa8.96□□□□□ -0.98
VPS13D-202ENST00000460333 PRDM2Q13029 1718 aa8.95□□□□□ -0.98
VPS13D-202ENST00000460333 MYT1LQ9UL68 1186 aa8.95□□□□□ -0.98
VPS13D-202ENST00000460333 DNMBPQ6XZF7 1577 aa8.94□□□□□ -0.98
VPS13D-202ENST00000460333 ERCC6Q03468 1493 aa8.94□□□□□ -0.98
VPS13D-202ENST00000460333 VPS8Q8N3P4 1428 aa8.94□□□□□ -0.98
VPS13D-202ENST00000460333 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.93□□□□□ -0.98
VPS13D-202ENST00000460333 HNRNPUL2Q1KMD3 747 aaKnown RBP8.93□□□□□ -0.98
VPS13D-202ENST00000460333 CLSPNQ9HAW4 1339 aa8.93□□□□□ -0.98
VPS13D-202ENST00000460333 FBLN2P98095 1184 aa8.93□□□□□ -0.98
VPS13D-202ENST00000460333 NESP48681 1621 aa8.92□□□□□ -0.98
VPS13D-202ENST00000460333 TOPBP1Q92547 1522 aa8.92□□□□□ -0.98
VPS13D-202ENST00000460333 PRXQ9BXM0 1461 aa8.91□□□□□ -0.98
VPS13D-202ENST00000460333 IGF1RP08069 1367 aa8.91□□□□□ -0.98
VPS13D-202ENST00000460333 FHAD1B1AJZ9 1412 aa8.89□□□□□ -0.99
VPS13D-202ENST00000460333 P3H3Q8IVL6 736 aa8.87□□□□□ -0.99
VPS13D-202ENST00000460333 POLA1P09884 1462 aaPredicted RBP8.87□□□□□ -0.99
VPS13D-202ENST00000460333 ABCA10Q8WWZ4 1543 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms