RNA–Protein interactions for RNA: ENST00000486868.1

PRKCB-207, Transcript of protein kinase C beta, humanhuman

TSL 3

Gene PRKCB, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCB-207ENST00000486868 NISCHQ9Y2I1 1504 aa26.18■■□□□ 1.78
PRKCB-207ENST00000486868 CCDC180Q9P1Z9 1646 aa22.77■■□□□ 1.24
PRKCB-207ENST00000486868 ZCCHC6Q5VYS8 1495 aaKnown RBP22.02■■□□□ 1.12
PRKCB-207ENST00000486868 DCAF1Q9Y4B6 1507 aa21.78■■□□□ 1.08
PRKCB-207ENST00000486868 MYO15BQ96JP2 1530 aa21.54■■□□□ 1.04
PRKCB-207ENST00000486868 DCAF8L2P0C7V8 631 aa21.4■■□□□ 1.02
PRKCB-207ENST00000486868 ABCC9O60706 1549 aa21.32■■□□□ 1
PRKCB-207ENST00000486868 NACADO15069 1562 aa21.25■□□□□ 0.99
PRKCB-207ENST00000486868 SHROOM4Q9ULL8 1493 aa21.18■□□□□ 0.98
PRKCB-207ENST00000486868 RB1CC1Q8TDY2 1594 aa20.98■□□□□ 0.95
PRKCB-207ENST00000486868 SCRIBQ14160 1630 aa20.78■□□□□ 0.92
PRKCB-207ENST00000486868 SUPT5HO00267 1087 aaKnown RBP20.48■□□□□ 0.87
PRKCB-207ENST00000486868 UNC13AQ9UPW8 1703 aa20.35■□□□□ 0.85
PRKCB-207ENST00000486868 RSF1Q96T23 1441 aaPredicted RBP20.34■□□□□ 0.85
PRKCB-207ENST00000486868 BICRAQ9NZM4 1560 aa20.29■□□□□ 0.84
PRKCB-207ENST00000486868 CECR2Q9BXF3 1484 aa20.24■□□□□ 0.83
PRKCB-207ENST00000486868 BAZ1AQ9NRL2 1556 aaPredicted RBP20.21■□□□□ 0.83
PRKCB-207ENST00000486868 MROH2BQ7Z745 1585 aa20.15■□□□□ 0.82
PRKCB-207ENST00000486868 PABPN1Q86U42 306 aaKnown RBP eCLIP20.12■□□□□ 0.81
PRKCB-207ENST00000486868 SMARCA4P51532 1647 aa20.04■□□□□ 0.8
PRKCB-207ENST00000486868 PEG3Q9GZU2 1588 aa19.91■□□□□ 0.78
PRKCB-207ENST00000486868 WIZO95785 1651 aa19.91■□□□□ 0.78
PRKCB-207ENST00000486868 TOP2AP11388 1531 aaKnown RBP19.85■□□□□ 0.77
PRKCB-207ENST00000486868 CHIC1Q5VXU3 224 aa19.79■□□□□ 0.76
PRKCB-207ENST00000486868 SMARCA2P51531 1590 aa19.77■□□□□ 0.76
PRKCB-207ENST00000486868 ATAD2BQ9ULI0 1458 aa19.76■□□□□ 0.75
PRKCB-207ENST00000486868 EIF4G1Q04637 1599 aaKnown RBP19.68■□□□□ 0.74
PRKCB-207ENST00000486868 NCAPD3P42695 1498 aa19.65■□□□□ 0.74
PRKCB-207ENST00000486868 CCDC88BA6NC98 1476 aa19.62■□□□□ 0.73
PRKCB-207ENST00000486868 BAZ1BQ9UIG0 1483 aaKnown RBP19.61■□□□□ 0.73
PRKCB-207ENST00000486868 HMGXB3Q12766 1538 aa19.58■□□□□ 0.73
PRKCB-207ENST00000486868 TRIM41Q8WV44 630 aa19.37■□□□□ 0.69
PRKCB-207ENST00000486868 CC2D2AQ9P2K1 1620 aa19.33■□□□□ 0.68
PRKCB-207ENST00000486868 CFTRP13569 1480 aa19.19■□□□□ 0.66
PRKCB-207ENST00000486868 WRNQ14191 1432 aaPredicted RBP eCLIP19.13■□□□□ 0.65
PRKCB-207ENST00000486868 CADPSQ9ULU8 1353 aa19.12■□□□□ 0.65
PRKCB-207ENST00000486868 ABCC8Q09428 1581 aa19.1■□□□□ 0.65
PRKCB-207ENST00000486868 EEA1Q15075 1411 aa19.04■□□□□ 0.64
PRKCB-207ENST00000486868 PRDM2Q13029 1718 aa18.94■□□□□ 0.62
PRKCB-207ENST00000486868 SYNJ1O43426 1573 aa18.94■□□□□ 0.62
PRKCB-207ENST00000486868 TOP2BQ02880 1626 aa18.94■□□□□ 0.62
PRKCB-207ENST00000486868 LOC105371045A0A1W2PR82 267 aa18.91■□□□□ 0.62
PRKCB-207ENST00000486868 BIVM-ERCC5R4GMW8 1640 aa18.9■□□□□ 0.62
PRKCB-207ENST00000486868 LAMC3Q9Y6N6 1575 aa18.89■□□□□ 0.62
PRKCB-207ENST00000486868 FAM9AQ8IZU1 332 aaPredicted RBP18.85■□□□□ 0.61
PRKCB-207ENST00000486868 CUX1P39880 1505 aa18.84■□□□□ 0.61
PRKCB-207ENST00000486868 SOGA1O94964 1423 aa18.84■□□□□ 0.61
PRKCB-207ENST00000486868 CSRNP3Q8WYN3 585 aa18.83■□□□□ 0.6
PRKCB-207ENST00000486868 FANCD2Q9BXW9 1451 aa18.83■□□□□ 0.6
PRKCB-207ENST00000486868 PDS5BQ9NTI5 1447 aa18.79■□□□□ 0.6
PRKCB-207ENST00000486868 DNAJC5BQ9UF47 199 aa18.73■□□□□ 0.59
PRKCB-207ENST00000486868 NESP48681 1621 aa18.73■□□□□ 0.59
PRKCB-207ENST00000486868 RUSC2Q8N2Y8 1516 aa18.72■□□□□ 0.59
PRKCB-207ENST00000486868 CEP164Q9UPV0 1460 aa18.71■□□□□ 0.59
PRKCB-207ENST00000486868 DNMBPQ6XZF7 1577 aa18.69■□□□□ 0.58
PRKCB-207ENST00000486868 KIF27Q86VH2 1401 aa18.68■□□□□ 0.58
PRKCB-207ENST00000486868 TNIKQ9UKE5 1360 aa18.68■□□□□ 0.58
PRKCB-207ENST00000486868 GOLGA3Q08378 1498 aa18.65■□□□□ 0.58
PRKCB-207ENST00000486868 KIF21BO75037 1637 aa18.65■□□□□ 0.58
PRKCB-207ENST00000486868 TOPBP1Q92547 1522 aa18.64■□□□□ 0.57
PRKCB-207ENST00000486868 FGD5Q6ZNL6 1462 aa18.63■□□□□ 0.57
PRKCB-207ENST00000486868 PRXQ9BXM0 1461 aa18.58■□□□□ 0.57
PRKCB-207ENST00000486868 URB2Q14146 1524 aaKnown RBP18.56■□□□□ 0.56
PRKCB-207ENST00000486868 ERICH3Q5RHP9 1530 aa18.56■□□□□ 0.56
PRKCB-207ENST00000486868 ABCA10Q8WWZ4 1543 aa18.55■□□□□ 0.56
PRKCB-207ENST00000486868 POLA1P09884 1462 aaPredicted RBP18.55■□□□□ 0.56
PRKCB-207ENST00000486868 CUX2O14529 1486 aa18.53■□□□□ 0.56
PRKCB-207ENST00000486868 IGF1RP08069 1367 aa18.51■□□□□ 0.55
PRKCB-207ENST00000486868 UBTFP17480 764 aaKnown RBP18.5■□□□□ 0.55
PRKCB-207ENST00000486868 MRC2Q9UBG0 1479 aa18.49■□□□□ 0.55
PRKCB-207ENST00000486868 CEP162Q5TB80 1403 aa18.48■□□□□ 0.55
PRKCB-207ENST00000486868 RAPGEF2Q9Y4G8 1499 aa18.47■□□□□ 0.55
PRKCB-207ENST00000486868 KIF21AQ7Z4S6 1674 aa18.45■□□□□ 0.54
PRKCB-207ENST00000486868 EHMT2Q96KQ7 1210 aa18.44■□□□□ 0.54
PRKCB-207ENST00000486868 RAD54L2Q9Y4B4 1467 aa18.42■□□□□ 0.54
PRKCB-207ENST00000486868 CARMIL1Q5VZK9 1371 aa18.41■□□□□ 0.54
PRKCB-207ENST00000486868 WDR62O43379 1518 aa18.39■□□□□ 0.53
PRKCB-207ENST00000486868 WDR97A6NE52 1622 aa18.35■□□□□ 0.53
PRKCB-207ENST00000486868 CLIP1P30622 1438 aa18.34■□□□□ 0.53
PRKCB-207ENST00000486868 TARBP1Q13395 1621 aaKnown RBP18.32■□□□□ 0.52
PRKCB-207ENST00000486868 IFT140Q96RY7 1462 aa18.32■□□□□ 0.52
PRKCB-207ENST00000486868 ABCA5Q8WWZ7 1642 aa18.31■□□□□ 0.52
PRKCB-207ENST00000486868 ERCC6Q03468 1493 aa18.31■□□□□ 0.52
PRKCB-207ENST00000486868 GAPVD1Q14C86 1478 aa18.31■□□□□ 0.52
PRKCB-207ENST00000486868 CUL7Q14999 1698 aa18.3■□□□□ 0.52
PRKCB-207ENST00000486868 TRIM26Q12899 539 aaPredicted RBP18.27■□□□□ 0.52
PRKCB-207ENST00000486868 TDRD9Q8NDG6 1382 aaKnown RBP18.26■□□□□ 0.51
PRKCB-207ENST00000486868 THOC2Q8NI27 1593 aaKnown RBP18.23■□□□□ 0.51
PRKCB-207ENST00000486868 VPS8Q8N3P4 1428 aa18.22■□□□□ 0.51
PRKCB-207ENST00000486868 GRIN2BQ13224 1484 aa18.19■□□□□ 0.5
PRKCB-207ENST00000486868 FHAD1B1AJZ9 1412 aa18.16■□□□□ 0.5
PRKCB-207ENST00000486868 PCGF6Q9BYE7 350 aa18.13■□□□□ 0.49
PRKCB-207ENST00000486868 AQRO60306 1485 aaKnown RBP eCLIP18.13■□□□□ 0.49
PRKCB-207ENST00000486868 ARAP1Q96P48 1450 aa18.12■□□□□ 0.49
PRKCB-207ENST00000486868 ARHGAP35Q9NRY4 1499 aa18.12■□□□□ 0.49
PRKCB-207ENST00000486868 ZNF608Q9ULD9 1512 aaPredicted RBP18.08■□□□□ 0.48
PRKCB-207ENST00000486868 EFCAB5A4FU69 1503 aa18.07■□□□□ 0.48
PRKCB-207ENST00000486868 PBRM1Q86U86 1689 aa18.06■□□□□ 0.48
PRKCB-207ENST00000486868 ADAMTS12P58397 1594 aa18.06■□□□□ 0.48
PRKCB-207ENST00000486868 MAGI1Q96QZ7 1491 aaPredicted RBP18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms