Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 USP14-205ENST00000578942 3189 ntTSL 210.71□□□□□ -0.692e-6■■■□□ 16
SMNDC1O75940 USP14-203ENST00000400266 1681 ntTSL 2 BASIC10.43□□□□□ -0.742e-6■■■□□ 16
SMNDC1O75940 RTN4-211ENST00000438462 656 ntTSL 510.14□□□□□ -0.792e-15■■■□□ 16
SMNDC1O75940 RTN4-214ENST00000486085 955 ntTSL 310.07□□□□□ -0.82e-15■■■□□ 16
SMNDC1O75940 ARHGAP11A-206ENST00000564918 572 ntTSL 39.65□□□□□ -0.863e-7■■■□□ 16
SMNDC1O75940 NFRKB-209ENST00000531755 3066 ntTSL 59.37□□□□□ -0.913e-8■■■□□ 16
SMNDC1O75940 RTN4-206ENST00000394611 4161 ntTSL 1 (best) BASIC9.28□□□□□ -0.922e-15■■■□□ 16
SMNDC1O75940 VDAC2-206ENST00000447677 738 ntTSL 39.1□□□□□ -0.953e-8■■■□□ 16
SMNDC1O75940 NFRKB-202ENST00000524746 4114 ntAPPRIS P1 TSL 5 BASIC8.86□□□□□ -0.993e-8■■■□□ 16
SMNDC1O75940 USP14-201ENST00000261601 4921 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.032e-6■■■□□ 16
SMNDC1O75940 ARHGAP11A-203ENST00000562481 620 ntTSL 38.6□□□□□ -1.033e-7■■■□□ 16
SMNDC1O75940 NFRKB-203ENST00000524794 4351 ntTSL 1 (best) BASIC8.6□□□□□ -1.033e-8■■■□□ 16
SMNDC1O75940 UBR4-206ENST00000419533 5583 ntTSL 58.41□□□□□ -1.068e-16■■■□□ 16
SMNDC1O75940 ARHGAP11A-202ENST00000543522 3152 ntTSL 2 BASIC8.31□□□□□ -1.083e-7■■■□□ 16
SMNDC1O75940 VDAC2-214ENST00000543351 1424 ntAPPRIS P1 TSL 5 BASIC7.35□□□□□ -1.233e-8■■■□□ 16
SMNDC1O75940 RTN4-205ENST00000394609 1898 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.272e-15■■■□□ 16
SMNDC1O75940 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC7.04□□□□□ -1.282e-15■■■□□ 16
SMNDC1O75940 USP14-204ENST00000578786 1104 ntTSL 57.03□□□□□ -1.282e-6■■■□□ 16
SMNDC1O75940 RTN4-215ENST00000491592 860 ntTSL 26.86□□□□□ -1.312e-15■■■□□ 16
SMNDC1O75940 VDAC2-201ENST00000298468 931 ntTSL 56.14□□□□□ -1.433e-8■■■□□ 16
SMNDC1O75940 RTN4-213ENST00000485749 832 ntTSL 25.73□□□□□ -1.492e-15■■■□□ 16
SMNDC1O75940 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.02□□□□□ -1.772e-15■■■□□ 16
SMNDC1O75940 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.59□□□□□ -1.843e-7■■■□□ 16
SMNDC1O75940 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.39□□□□□ -1.872e-15■■■□□ 16
SMNDC1O75940 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.86■□□□□ 0.454e-6■■■□□ 16
SMNDC1O75940 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.314e-6■■■□□ 16
SMNDC1O75940 TRIM11-206ENST00000602582 682 ntTSL 314.31□□□□□ -0.124e-6■■■□□ 16
SMNDC1O75940 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC13.96□□□□□ -0.184e-6■■■□□ 16
SMNDC1O75940 TRIM11-205ENST00000602308 586 ntTSL 313.03□□□□□ -0.324e-6■■■□□ 16
SMNDC1O75940 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC12.52□□□□□ -0.419e-8■■■□□ 16
SMNDC1O75940 BCAR1-218ENST00000566982 3024 ntTSL 216.25■□□□□ 0.191e-7■■■□□ 16
SMNDC1O75940 TCF25-206ENST00000562193 627 ntTSL 310.07□□□□□ -0.87e-7■■■□□ 16
SMNDC1O75940 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.86■□□□□ 0.296e-7■■■□□ 16
SMNDC1O75940 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC16.05■□□□□ 0.166e-7■■■□□ 16
SMNDC1O75940 GOLGA2-201ENST00000421699 4260 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.566e-7■■■□□ 16
SMNDC1O75940 GOLGA2-214ENST00000611957 4259 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.566e-7■■■□□ 16
SMNDC1O75940 HGS-204ENST00000571237 878 ntTSL 314.64□□□□□ -0.072e-6■■■□□ 15.9
SMNDC1O75940 NME4-209ENST00000460297 1652 ntTSL 521.63■■□□□ 1.051e-7■■■□□ 15.9
SMNDC1O75940 NME4-204ENST00000433358 966 ntTSL 320.96■□□□□ 0.951e-7■■■□□ 15.9
SMNDC1O75940 NME4-206ENST00000448828 1167 ntTSL 220.51■□□□□ 0.871e-7■■■□□ 15.9
SMNDC1O75940 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.731e-7■■■□□ 15.9
SMNDC1O75940 NME4-202ENST00000382940 766 ntTSL 3 BASIC19.59■□□□□ 0.731e-7■■■□□ 15.9
SMNDC1O75940 NME4-211ENST00000620944 1193 ntTSL 2 BASIC19.59■□□□□ 0.731e-7■■■□□ 15.9
SMNDC1O75940 NME4-205ENST00000444498 1111 ntTSL 316.79■□□□□ 0.281e-7■■■□□ 15.9
SMNDC1O75940 NME4-212ENST00000621774 904 ntTSL 3 BASIC15.6■□□□□ 0.091e-7■■■□□ 15.9
SMNDC1O75940 NME4-208ENST00000454619 719 ntTSL 512.94□□□□□ -0.341e-7■■■□□ 15.9
SMNDC1O75940 NME4-203ENST00000397722 1232 ntTSL 2 BASIC12.27□□□□□ -0.451e-7■■■□□ 15.9
SMNDC1O75940 RBM39-212ENST00000429968 2149 ntTSL 213.9□□□□□ -0.188e-11■■■□□ 15.9
SMNDC1O75940 RBM39-243ENST00000528062 2421 ntTSL 1 (best) BASIC13.57□□□□□ -0.248e-11■■■□□ 15.9
SMNDC1O75940 RBM39-216ENST00000444878 2124 ntTSL 213.33□□□□□ -0.288e-11■■■□□ 15.9
SMNDC1O75940 RBM39-203ENST00000361162 2831 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.288e-11■■■□□ 15.9
SMNDC1O75940 RBM39-202ENST00000338163 2792 ntTSL 212.73□□□□□ -0.378e-11■■■□□ 15.9
SMNDC1O75940 RBM39-206ENST00000403542 2883 ntTSL 212.54□□□□□ -0.48e-11■■■□□ 15.9
SMNDC1O75940 RBM39-245ENST00000639702 5914 ntTSL 512.35□□□□□ -0.438e-11■■■□□ 15.9
SMNDC1O75940 RBM39-223ENST00000463004 4580 ntTSL 511.31□□□□□ -0.68e-11■■■□□ 15.9
SMNDC1O75940 RBM39-237ENST00000492779 2316 ntTSL 26.9□□□□□ -1.318e-11■■■□□ 15.9
SMNDC1O75940 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.43□□□□□ -1.78e-11■■■□□ 15.9
SMNDC1O75940 RBM39-221ENST00000461283 2415 ntTSL 53.5□□□□□ -1.858e-11■■■□□ 15.9
SMNDC1O75940 RPL13A-205ENST00000474171 521 ntTSL 210.08□□□□□ -0.82e-87■■■□□ 15.9
SMNDC1O75940 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.095e-6■■■□□ 15.9
SMNDC1O75940 GNA11-203ENST00000586763 354 ntTSL 314.25□□□□□ -0.135e-6■■■□□ 15.9
SMNDC1O75940 PTBP1-209ENST00000586481 578 ntTSL 317.89■□□□□ 0.456e-7■■■□□ 15.9
SMNDC1O75940 PTBP1-214ENST00000589575 749 ntTSL 311.81□□□□□ -0.526e-7■■■□□ 15.9
SMNDC1O75940 PTBP1-216ENST00000590887 642 ntTSL 311.77□□□□□ -0.536e-7■■■□□ 15.9
SMNDC1O75940 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC20■□□□□ 0.796e-11■■■□□ 15.9
SMNDC1O75940 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.676e-11■■■□□ 15.9
SMNDC1O75940 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.576e-11■■■□□ 15.9
SMNDC1O75940 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC18.39■□□□□ 0.536e-11■■■□□ 15.9
SMNDC1O75940 VCP-203ENST00000448530 950 ntTSL 517.77■□□□□ 0.443e-9■■■□□ 15.9
SMNDC1O75940 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.83■□□□□ 0.286e-11■■■□□ 15.9
SMNDC1O75940 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.286e-11■■■□□ 15.9
SMNDC1O75940 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC16.53■□□□□ 0.246e-11■■■□□ 15.9
SMNDC1O75940 VCP-202ENST00000417448 722 ntTSL 316.05■□□□□ 0.163e-9■■■□□ 15.9
SMNDC1O75940 PUF60-214ENST00000529693 684 ntTSL 215.45■□□□□ 0.063e-9■■■□□ 15.9
SMNDC1O75940 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC12.8□□□□□ -0.363e-9■■■□□ 15.9
SMNDC1O75940 EWSR1-216ENST00000479135 7285 ntTSL 1 (best)11.78□□□□□ -0.526e-11■■■□□ 15.9
SMNDC1O75940 EWSR1-217ENST00000483415 3231 ntTSL 1 (best)11.67□□□□□ -0.543e-9■■■□□ 15.9
SMNDC1O75940 PUF60-213ENST00000528999 431 ntTSL 310.64□□□□□ -0.713e-9■■■□□ 15.9
SMNDC1O75940 PAXX-206ENST00000492564 701 ntTSL 318.27■□□□□ 0.525e-11■■■□□ 15.9
SMNDC1O75940 PAXX-207ENST00000493968 958 ntTSL 1 (best)17.6■□□□□ 0.415e-11■■■□□ 15.9
SMNDC1O75940 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.388e-8■■■□□ 15.9
SMNDC1O75940 PAXX-205ENST00000483807 705 ntTSL 516.73■□□□□ 0.275e-11■■■□□ 15.9
SMNDC1O75940 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.073e-6■■■□□ 15.9
SMNDC1O75940 PAXX-203ENST00000467845 744 ntTSL 215.32■□□□□ 0.045e-11■■■□□ 15.9
SMNDC1O75940 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.045e-11■■■□□ 15.9
SMNDC1O75940 PAXX-208ENST00000498095 1077 ntTSL 515.05■□□□□ -05e-11■■■□□ 15.9
SMNDC1O75940 PAXX-204ENST00000481187 794 ntTSL 314.11□□□□□ -0.155e-11■■■□□ 15.9
SMNDC1O75940 SYNCRIP-201ENST00000355238 6449 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.38e-8■■■□□ 15.9
SMNDC1O75940 SRSF7-203ENST00000415527 1135 ntTSL 513.08□□□□□ -0.325e-11■■■□□ 15.9
SMNDC1O75940 SYNCRIP-203ENST00000444272 610 ntTSL 312.96□□□□□ -0.338e-8■■■□□ 15.9
SMNDC1O75940 SRSF7-209ENST00000446327 2453 ntTSL 2 BASIC11.71□□□□□ -0.535e-11■■■□□ 15.9
SMNDC1O75940 AGAP3-214ENST00000476375 1019 ntTSL 511.69□□□□□ -0.545e-6■■■□□ 15.9
SMNDC1O75940 SRSF7-201ENST00000313117 2489 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.65e-11■■■□□ 15.9
SMNDC1O75940 SRSF7-206ENST00000431066 1847 ntTSL 510.01□□□□□ -0.815e-11■■■□□ 15.9
SMNDC1O75940 SRSF7-204ENST00000425778 2857 ntTSL 29.83□□□□□ -0.845e-11■■■□□ 15.9
SMNDC1O75940 SRSF7-208ENST00000443213 1903 ntTSL 59.36□□□□□ -0.915e-11■■■□□ 15.9
SMNDC1O75940 SRSF7-205ENST00000425941 1944 ntTSL 59.08□□□□□ -0.965e-11■■■□□ 15.9
SMNDC1O75940 SRSF7-202ENST00000409276 1050 ntTSL 5 BASIC6.78□□□□□ -1.325e-11■■■□□ 15.9
SMNDC1O75940 RNU6-256P-201ENST00000516747 97 ntBASIC5.65□□□□□ -1.58e-8■■■□□ 15.9
SMNDC1O75940 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.62□□□□□ -1.518e-8■■■□□ 15.9
Retrieved 100 of 11,362 protein–RNA pairs in 20.8 ms