RNA–Protein interactions for RNA: ENST00000357376.7

RTN4-203, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,110 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-203ENST00000357376 NISCHQ9Y2I1 1504 aa12.85□□□□□ -0.35
RTN4-203ENST00000357376 SHROOM4Q9ULL8 1493 aa11.8□□□□□ -0.52
RTN4-203ENST00000357376 DCAF8L2P0C7V8 631 aa11.77□□□□□ -0.53
RTN4-203ENST00000357376 SUPT5HO00267 1087 aaKnown RBP11.76□□□□□ -0.53
RTN4-203ENST00000357376 PCGF6Q9BYE7 350 aa11.2□□□□□ -0.62
RTN4-203ENST00000357376 EHMT2Q96KQ7 1210 aa11.11□□□□□ -0.63
RTN4-203ENST00000357376 CHIC1Q5VXU3 224 aa11.05□□□□□ -0.64
RTN4-203ENST00000357376 FAM9AQ8IZU1 332 aaPredicted RBP10.98□□□□□ -0.65
RTN4-203ENST00000357376 HRCP23327 699 aa10.98□□□□□ -0.65
RTN4-203ENST00000357376 LOC105371045A0A1W2PR82 267 aa10.93□□□□□ -0.66
RTN4-203ENST00000357376 PPARGC1BQ86YN6 1023 aaKnown RBP10.89□□□□□ -0.67
RTN4-203ENST00000357376 TRIM41Q8WV44 630 aa10.83□□□□□ -0.68
RTN4-203ENST00000357376 ZCCHC6Q5VYS8 1495 aaKnown RBP10.8□□□□□ -0.68
RTN4-203ENST00000357376 TTBK1Q5TCY1 1321 aaPredicted RBP10.75□□□□□ -0.69
RTN4-203ENST00000357376 MYO15BQ96JP2 1530 aa10.75□□□□□ -0.69
RTN4-203ENST00000357376 TRIM26Q12899 539 aaPredicted RBP10.74□□□□□ -0.69
RTN4-203ENST00000357376 ZEB1P37275 1124 aaPredicted RBP10.64□□□□□ -0.71
RTN4-203ENST00000357376 CCER1Q8TC90 406 aaPredicted RBP10.59□□□□□ -0.71
RTN4-203ENST00000357376 CCDC180Q9P1Z9 1646 aa10.57□□□□□ -0.72
RTN4-203ENST00000357376 DCAF1Q9Y4B6 1507 aa10.49□□□□□ -0.73
RTN4-203ENST00000357376 RANGAP1P46060 587 aaPredicted RBP10.47□□□□□ -0.73
RTN4-203ENST00000357376 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.46□□□□□ -0.73
RTN4-203ENST00000357376 UBTFP17480 764 aaKnown RBP10.46□□□□□ -0.74
RTN4-203ENST00000357376 ABCC9O60706 1549 aa10.41□□□□□ -0.74
RTN4-203ENST00000357376 APLP2Q06481 763 aa10.4□□□□□ -0.74
RTN4-203ENST00000357376 SCRIBQ14160 1630 aa10.4□□□□□ -0.74
RTN4-203ENST00000357376 CENPBP07199 599 aaPredicted RBP10.38□□□□□ -0.75
RTN4-203ENST00000357376 YTHDC1Q96MU7 727 aaKnown RBP10.36□□□□□ -0.75
RTN4-203ENST00000357376 RSF1Q96T23 1441 aaPredicted RBP10.33□□□□□ -0.76
RTN4-203ENST00000357376 PELP1Q8IZL8 1130 aaKnown RBP10.32□□□□□ -0.76
RTN4-203ENST00000357376 HNRNPUL2Q1KMD3 747 aaKnown RBP10.28□□□□□ -0.76
RTN4-203ENST00000357376 DIEXFQ68CQ4 756 aaKnown RBP10.28□□□□□ -0.76
RTN4-203ENST00000357376 PABPN1Q86U42 306 aaKnown RBP eCLIP10.21□□□□□ -0.77
RTN4-203ENST00000357376 SCAF1Q9H7N4 1312 aaKnown RBP10.19□□□□□ -0.78
RTN4-203ENST00000357376 GTF3C3Q9Y5Q9 886 aa10.18□□□□□ -0.78
RTN4-203ENST00000357376 RB1CC1Q8TDY2 1594 aa10.17□□□□□ -0.78
RTN4-203ENST00000357376 CECR2Q9BXF3 1484 aa10.15□□□□□ -0.78
RTN4-203ENST00000357376 ACIN1Q9UKV3 1341 aaKnown RBP10.15□□□□□ -0.79
RTN4-203ENST00000357376 CSRNP3Q8WYN3 585 aa10.13□□□□□ -0.79
RTN4-203ENST00000357376 ITGAEP38570 1179 aa10.12□□□□□ -0.79
RTN4-203ENST00000357376 NEUROD1Q13562 356 aa10.12□□□□□ -0.79
RTN4-203ENST00000357376 ATP1B4Q9UN42 357 aaPredicted RBP10.11□□□□□ -0.79
RTN4-203ENST00000357376 ZNF316A6NFI3 1004 aaPredicted RBP10.08□□□□□ -0.8
RTN4-203ENST00000357376 MROH2BQ7Z745 1585 aa10.05□□□□□ -0.8
RTN4-203ENST00000357376 CEP162Q5TB80 1403 aa10.02□□□□□ -0.81
RTN4-203ENST00000357376 NACADO15069 1562 aa9.98□□□□□ -0.81
RTN4-203ENST00000357376 SOGA1O94964 1423 aa9.96□□□□□ -0.81
RTN4-203ENST00000357376 WIZO95785 1651 aa9.96□□□□□ -0.82
RTN4-203ENST00000357376 ABCC8Q09428 1581 aa9.95□□□□□ -0.82
RTN4-203ENST00000357376 MIER1Q8N108 512 aa9.94□□□□□ -0.82
RTN4-203ENST00000357376 CCDC88BA6NC98 1476 aa9.94□□□□□ -0.82
RTN4-203ENST00000357376 TNIKQ9UKE5 1360 aa9.91□□□□□ -0.82
RTN4-203ENST00000357376 BAZ1AQ9NRL2 1556 aaPredicted RBP9.91□□□□□ -0.82
RTN4-203ENST00000357376 CLIP1P30622 1438 aa9.89□□□□□ -0.83
RTN4-203ENST00000357376 GOLGA3Q08378 1498 aa9.88□□□□□ -0.83
RTN4-203ENST00000357376 FAM50AQ14320 339 aaKnown RBP9.88□□□□□ -0.83
RTN4-203ENST00000357376 WRNQ14191 1432 aaPredicted RBP eCLIP9.87□□□□□ -0.83
RTN4-203ENST00000357376 MYT1Q01538 1121 aa9.87□□□□□ -0.83
RTN4-203ENST00000357376 NEFLP07196 543 aa9.86□□□□□ -0.83
RTN4-203ENST00000357376 EEA1Q15075 1411 aa9.85□□□□□ -0.83
RTN4-203ENST00000357376 BCANQ96GW7 911 aa9.84□□□□□ -0.83
RTN4-203ENST00000357376 P3H3Q8IVL6 736 aa9.83□□□□□ -0.84
RTN4-203ENST00000357376 RUSC2Q8N2Y8 1516 aa9.82□□□□□ -0.84
RTN4-203ENST00000357376 CEP164Q9UPV0 1460 aa9.79□□□□□ -0.84
RTN4-203ENST00000357376 TOP2AP11388 1531 aaKnown RBP9.77□□□□□ -0.84
RTN4-203ENST00000357376 CNGB1Q14028 1251 aaPredicted RBP9.74□□□□□ -0.85
RTN4-203ENST00000357376 DDX10Q13206 875 aaKnown RBP9.73□□□□□ -0.85
RTN4-203ENST00000357376 BAZ1BQ9UIG0 1483 aaKnown RBP9.73□□□□□ -0.85
RTN4-203ENST00000357376 ERICH6Q7L0X2 663 aa9.72□□□□□ -0.85
RTN4-203ENST00000357376 HIRIP3Q9BW71 556 aaPredicted RBP9.71□□□□□ -0.85
RTN4-203ENST00000357376 VPS8Q8N3P4 1428 aa9.71□□□□□ -0.85
RTN4-203ENST00000357376 SMARCA4P51532 1647 aa9.71□□□□□ -0.86
RTN4-203ENST00000357376 KANK4Q5T7N3 995 aaPredicted RBP9.7□□□□□ -0.86
RTN4-203ENST00000357376 SMARCA2P51531 1590 aa9.69□□□□□ -0.86
RTN4-203ENST00000357376 ANP32CO43423 234 aa9.68□□□□□ -0.86
RTN4-203ENST00000357376 POLR3GLQ9BT43 218 aa9.68□□□□□ -0.86
RTN4-203ENST00000357376 FKBP8Q14318 412 aa9.67□□□□□ -0.86
RTN4-203ENST00000357376 RAPGEF2Q9Y4G8 1499 aa9.67□□□□□ -0.86
RTN4-203ENST00000357376 TRIM52Q96A61 297 aa9.66□□□□□ -0.86
RTN4-203ENST00000357376 ARID3CA6NKF2 412 aa9.64□□□□□ -0.87
RTN4-203ENST00000357376 SIN3AQ96ST3 1273 aa9.63□□□□□ -0.87
RTN4-203ENST00000357376 KIF27Q86VH2 1401 aa9.62□□□□□ -0.87
RTN4-203ENST00000357376 SUPT16HQ9Y5B9 1047 aaKnown RBP9.62□□□□□ -0.87
RTN4-203ENST00000357376 CLSPNQ9HAW4 1339 aa9.6□□□□□ -0.87
RTN4-203ENST00000357376 CCNB3Q8WWL7 1395 aa9.6□□□□□ -0.87
RTN4-203ENST00000357376 TONSLQ96HA7 1378 aa9.59□□□□□ -0.87
RTN4-203ENST00000357376 DHX57Q6P158 1386 aaKnown RBP9.57□□□□□ -0.88
RTN4-203ENST00000357376 ATAD2BQ9ULI0 1458 aa9.57□□□□□ -0.88
RTN4-203ENST00000357376 CHIC2Q9UKJ5 165 aa9.56□□□□□ -0.88
RTN4-203ENST00000357376 HNRNPUQ00839 825 aaKnown RBP eCLIP9.55□□□□□ -0.883e-6■□□□□ 10
RTN4-203ENST00000357376 KCNH8Q96L42 1107 aa9.55□□□□□ -0.88
RTN4-203ENST00000357376 ZNF326Q5BKZ1 582 aaKnown RBP9.54□□□□□ -0.88
RTN4-203ENST00000357376 IRX6P78412 446 aaPredicted RBP9.54□□□□□ -0.88
RTN4-203ENST00000357376 SYNJ1O43426 1573 aa9.54□□□□□ -0.88
RTN4-203ENST00000357376 RAB3GAP2Q9H2M9 1393 aa9.53□□□□□ -0.88
RTN4-203ENST00000357376 CUX2O14529 1486 aa9.52□□□□□ -0.88
RTN4-203ENST00000357376 MTUS2Q5JR59 1369 aa9.52□□□□□ -0.89
RTN4-203ENST00000357376 KIF21BO75037 1637 aa9.51□□□□□ -0.89
RTN4-203ENST00000357376 CDK11AQ9UQ88 783 aaPredicted RBP9.5□□□□□ -0.89
RTN4-203ENST00000357376 RRP7BPQ9NSQ0 103 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms