RNA–Protein interactions for RNA: ENST00000405240.5

RTN4-209, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,061 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-209ENST00000405240 NISCHQ9Y2I1 1504 aa8.33□□□□□ -1.08
RTN4-209ENST00000405240 CCDC180Q9P1Z9 1646 aa7.21□□□□□ -1.26
RTN4-209ENST00000405240 ZCCHC6Q5VYS8 1495 aaKnown RBP7.07□□□□□ -1.28
RTN4-209ENST00000405240 DCAF1Q9Y4B6 1507 aa6.95□□□□□ -1.3
RTN4-209ENST00000405240 SHROOM4Q9ULL8 1493 aa6.81□□□□□ -1.32
RTN4-209ENST00000405240 MYO15BQ96JP2 1530 aa6.77□□□□□ -1.33
RTN4-209ENST00000405240 ABCC9O60706 1549 aa6.68□□□□□ -1.34
RTN4-209ENST00000405240 SUPT5HO00267 1087 aaKnown RBP6.65□□□□□ -1.35
RTN4-209ENST00000405240 CHIC1Q5VXU3 224 aa6.61□□□□□ -1.35
RTN4-209ENST00000405240 NACADO15069 1562 aa6.59□□□□□ -1.35
RTN4-209ENST00000405240 SCRIBQ14160 1630 aa6.56□□□□□ -1.36
RTN4-209ENST00000405240 RSF1Q96T23 1441 aaPredicted RBP6.54□□□□□ -1.36
RTN4-209ENST00000405240 RB1CC1Q8TDY2 1594 aa6.53□□□□□ -1.36
RTN4-209ENST00000405240 DCAF8L2P0C7V8 631 aa6.52□□□□□ -1.37
RTN4-209ENST00000405240 UNC13AQ9UPW8 1703 aa6.46□□□□□ -1.38
RTN4-209ENST00000405240 EIF4G1Q04637 1599 aaKnown RBP6.46□□□□□ -1.38
RTN4-209ENST00000405240 BAZ1AQ9NRL2 1556 aaPredicted RBP6.44□□□□□ -1.38
RTN4-209ENST00000405240 MROH2BQ7Z745 1585 aa6.43□□□□□ -1.38
RTN4-209ENST00000405240 WIZO95785 1651 aa6.42□□□□□ -1.38
RTN4-209ENST00000405240 CECR2Q9BXF3 1484 aa6.42□□□□□ -1.38
RTN4-209ENST00000405240 HRCP23327 699 aa6.39□□□□□ -1.39
RTN4-209ENST00000405240 SMARCA4P51532 1647 aa6.36□□□□□ -1.39
RTN4-209ENST00000405240 TOP2AP11388 1531 aaKnown RBP6.35□□□□□ -1.39
RTN4-209ENST00000405240 PEG3Q9GZU2 1588 aa6.33□□□□□ -1.4
RTN4-209ENST00000405240 LOC105371045A0A1W2PR82 267 aa6.32□□□□□ -1.4
RTN4-209ENST00000405240 BICRAQ9NZM4 1560 aa6.32□□□□□ -1.4
RTN4-209ENST00000405240 SMARCA2P51531 1590 aa6.31□□□□□ -1.4
RTN4-209ENST00000405240 AEBP2Q6ZN18 517 aaPredicted RBP6.3□□□□□ -1.4
RTN4-209ENST00000405240 PCGF6Q9BYE7 350 aa6.27□□□□□ -1.41
RTN4-209ENST00000405240 CCDC88BA6NC98 1476 aa6.26□□□□□ -1.41
RTN4-209ENST00000405240 TRIM26Q12899 539 aaPredicted RBP6.26□□□□□ -1.41
RTN4-209ENST00000405240 TRIM41Q8WV44 630 aa6.26□□□□□ -1.41
RTN4-209ENST00000405240 ABCC8Q09428 1581 aa6.2□□□□□ -1.42
RTN4-209ENST00000405240 WRNQ14191 1432 aaPredicted RBP eCLIP6.2□□□□□ -1.42
RTN4-209ENST00000405240 EEA1Q15075 1411 aa6.18□□□□□ -1.42
RTN4-209ENST00000405240 KIF21BO75037 1637 aa6.15□□□□□ -1.42
RTN4-209ENST00000405240 ATAD2BQ9ULI0 1458 aa6.15□□□□□ -1.42
RTN4-209ENST00000405240 PPARGC1BQ86YN6 1023 aaKnown RBP6.15□□□□□ -1.43
RTN4-209ENST00000405240 SYNJ1O43426 1573 aa6.14□□□□□ -1.43
RTN4-209ENST00000405240 ZEB1P37275 1124 aaPredicted RBP6.14□□□□□ -1.43
RTN4-209ENST00000405240 BIVM-ERCC5R4GMW8 1640 aa6.13□□□□□ -1.43
RTN4-209ENST00000405240 TNIKQ9UKE5 1360 aa6.13□□□□□ -1.43
RTN4-209ENST00000405240 SOGA1O94964 1423 aa6.12□□□□□ -1.43
RTN4-209ENST00000405240 PRDM2Q13029 1718 aa6.11□□□□□ -1.43
RTN4-209ENST00000405240 HMGXB3Q12766 1538 aa6.11□□□□□ -1.43
RTN4-209ENST00000405240 TOP2BQ02880 1626 aa6.11□□□□□ -1.43
RTN4-209ENST00000405240 RUSC2Q8N2Y8 1516 aa6.11□□□□□ -1.43
RTN4-209ENST00000405240 FAM9AQ8IZU1 332 aaPredicted RBP6.1□□□□□ -1.43
RTN4-209ENST00000405240 CEP162Q5TB80 1403 aa6.1□□□□□ -1.43
RTN4-209ENST00000405240 BAZ1BQ9UIG0 1483 aaKnown RBP6.09□□□□□ -1.43
RTN4-209ENST00000405240 GOLGA3Q08378 1498 aa6.09□□□□□ -1.43
RTN4-209ENST00000405240 NCAPD3P42695 1498 aa6.07□□□□□ -1.44
RTN4-209ENST00000405240 CEP164Q9UPV0 1460 aa6.06□□□□□ -1.44
RTN4-209ENST00000405240 CSRNP3Q8WYN3 585 aa6.05□□□□□ -1.44
RTN4-209ENST00000405240 ERICH3Q5RHP9 1530 aa6.05□□□□□ -1.44
RTN4-209ENST00000405240 PABPN1Q86U42 306 aaKnown RBP eCLIP6.04□□□□□ -1.44
RTN4-209ENST00000405240 PRXQ9BXM0 1461 aa6.01□□□□□ -1.45
RTN4-209ENST00000405240 CUX1P39880 1505 aa6.01□□□□□ -1.45
RTN4-209ENST00000405240 CFTRP13569 1480 aa6□□□□□ -1.45
RTN4-209ENST00000405240 RAPGEF2Q9Y4G8 1499 aa5.99□□□□□ -1.45
RTN4-209ENST00000405240 VPS8Q8N3P4 1428 aa5.99□□□□□ -1.45
RTN4-209ENST00000405240 CLIP1P30622 1438 aa5.97□□□□□ -1.45
RTN4-209ENST00000405240 ARAP1Q96P48 1450 aa5.96□□□□□ -1.46
RTN4-209ENST00000405240 EHMT2Q96KQ7 1210 aa5.95□□□□□ -1.46
RTN4-209ENST00000405240 CUX2O14529 1486 aa5.92□□□□□ -1.46
RTN4-209ENST00000405240 MAP3K1Q13233 1512 aa5.92□□□□□ -1.46
RTN4-209ENST00000405240 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.92□□□□□ -1.46
RTN4-209ENST00000405240 UBTFP17480 764 aaKnown RBP5.91□□□□□ -1.46
RTN4-209ENST00000405240 KIF27Q86VH2 1401 aa5.91□□□□□ -1.46
RTN4-209ENST00000405240 WDR97A6NE52 1622 aa5.9□□□□□ -1.46
RTN4-209ENST00000405240 RRBP1Q9P2E9 1410 aaKnown RBP5.9□□□□□ -1.47
RTN4-209ENST00000405240 CC2D2AQ9P2K1 1620 aa5.89□□□□□ -1.47
RTN4-209ENST00000405240 ARHGAP35Q9NRY4 1499 aa5.89□□□□□ -1.47
RTN4-209ENST00000405240 CCER1Q8TC90 406 aaPredicted RBP5.89□□□□□ -1.47
RTN4-209ENST00000405240 CFAP43Q8NDM7 1665 aa5.89□□□□□ -1.47
RTN4-209ENST00000405240 CADPSQ9ULU8 1353 aa5.88□□□□□ -1.47
RTN4-209ENST00000405240 DNMBPQ6XZF7 1577 aa5.87□□□□□ -1.47
RTN4-209ENST00000405240 IGF1RP08069 1367 aa5.86□□□□□ -1.47
RTN4-209ENST00000405240 CLSPNQ9HAW4 1339 aa5.86□□□□□ -1.47
RTN4-209ENST00000405240 CTTNBP2Q8WZ74 1663 aa5.86□□□□□ -1.47
RTN4-209ENST00000405240 TIAM1Q13009 1591 aa5.86□□□□□ -1.47
RTN4-209ENST00000405240 CUL7Q14999 1698 aa5.86□□□□□ -1.47
RTN4-209ENST00000405240 FGD5Q6ZNL6 1462 aa5.86□□□□□ -1.47
RTN4-209ENST00000405240 ABCA10Q8WWZ4 1543 aa5.85□□□□□ -1.47
RTN4-209ENST00000405240 SCAF1Q9H7N4 1312 aaKnown RBP5.84□□□□□ -1.47
RTN4-209ENST00000405240 LAMC3Q9Y6N6 1575 aa5.83□□□□□ -1.48
RTN4-209ENST00000405240 ABCA5Q8WWZ7 1642 aa5.83□□□□□ -1.48
RTN4-209ENST00000405240 EFCAB5A4FU69 1503 aa5.82□□□□□ -1.48
RTN4-209ENST00000405240 DHX57Q6P158 1386 aaKnown RBP5.82□□□□□ -1.48
RTN4-209ENST00000405240 AQRO60306 1485 aaKnown RBP eCLIP5.82□□□□□ -1.487e-8■■■■■ 28.3
RTN4-209ENST00000405240 ZNF316A6NFI3 1004 aaPredicted RBP5.82□□□□□ -1.48
RTN4-209ENST00000405240 DIEXFQ68CQ4 756 aaKnown RBP5.82□□□□□ -1.48
RTN4-209ENST00000405240 FANCD2Q9BXW9 1451 aa5.82□□□□□ -1.48
RTN4-209ENST00000405240 TOPBP1Q92547 1522 aa5.82□□□□□ -1.48
RTN4-209ENST00000405240 LRRIQ1Q96JM4 1722 aa5.81□□□□□ -1.48
RTN4-209ENST00000405240 SAMD9Q5K651 1589 aa5.81□□□□□ -1.48
RTN4-209ENST00000405240 PCF11O94913 1555 aaKnown RBP5.81□□□□□ -1.48
RTN4-209ENST00000405240 KIF21AQ7Z4S6 1674 aa5.8□□□□□ -1.48
RTN4-209ENST00000405240 KANK4Q5T7N3 995 aaPredicted RBP5.8□□□□□ -1.48
RTN4-209ENST00000405240 ACIN1Q9UKV3 1341 aaKnown RBP5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms