RNA–Protein interactions for RNA: ENST00000253363.10

RBM39-201, Transcript of RNA binding motif protein 39, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene RBM39, Length 2,488 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM39-201ENST00000253363 CHIC1Q5VXU3 224 aa11.64□□□□□ -0.55
RBM39-201ENST00000253363 AEBP2Q6ZN18 517 aaPredicted RBP11.62□□□□□ -0.55
RBM39-201ENST00000253363 PHF23Q9BUL5 403 aaPredicted RBP10.4□□□□□ -0.74
RBM39-201ENST00000253363 SENP3Q9H4L4 574 aaPredicted RBP9.62□□□□□ -0.87
RBM39-201ENST00000253363 PLPPR3Q6T4P5 718 aa9.61□□□□□ -0.87
RBM39-201ENST00000253363 ADRA2BP18089 450 aa9.19□□□□□ -0.94
RBM39-201ENST00000253363 PPP6R1Q9UPN7 881 aa9.08□□□□□ -0.96
RBM39-201ENST00000253363 FOXD1Q16676 465 aa8.99□□□□□ -0.97
RBM39-201ENST00000253363 KCNA4P22459 653 aa8.98□□□□□ -0.97
RBM39-201ENST00000253363 EHMT2Q96KQ7 1210 aa8.94□□□□□ -0.98
RBM39-201ENST00000253363 NISCHQ9Y2I1 1504 aa8.63□□□□□ -1.03
RBM39-201ENST00000253363 PPP4R3CPQ6ZMV5 832 aa8.57□□□□□ -1.04
RBM39-201ENST00000253363 PIAS4Q8N2W9 510 aaPredicted RBP8.57□□□□□ -1.04
RBM39-201ENST00000253363 CSRNP3Q8WYN3 585 aa8.57□□□□□ -1.04
RBM39-201ENST00000253363 SLC4A1APQ9BWU0 796 aaKnown RBP8.54□□□□□ -1.04
RBM39-201ENST00000253363 NPM3O75607 178 aaKnown RBP8.4□□□□□ -1.07
RBM39-201ENST00000253363 NCBP3Q53F19 620 aaKnown RBP8.36□□□□□ -1.07
RBM39-201ENST00000253363 ZBTB22O15209 634 aa8.32□□□□□ -1.08
RBM39-201ENST00000253363 CNKSR2Q8WXI2 1034 aa8.18□□□□□ -1.1
RBM39-201ENST00000253363 MAPK8IP2Q13387 824 aaPredicted RBP8.13□□□□□ -1.11
RBM39-201ENST00000253363 SCAF1Q9H7N4 1312 aaKnown RBP8.07□□□□□ -1.12
RBM39-201ENST00000253363 FOXD4L1Q9NU39 408 aa8.02□□□□□ -1.13
RBM39-201ENST00000253363 MSH5O43196 834 aa7.97□□□□□ -1.13
RBM39-201ENST00000253363 RNF216Q9NWF9 866 aaPredicted RBP7.91□□□□□ -1.14
RBM39-201ENST00000253363 DNAJC5BQ9UF47 199 aa7.89□□□□□ -1.15
RBM39-201ENST00000253363 CCDC180Q9P1Z9 1646 aa7.88□□□□□ -1.15
RBM39-201ENST00000253363 RTN4Q9NQC3 1192 aaKnown RBP7.87□□□□□ -1.15
RBM39-201ENST00000253363 SLC4A2P04920 1241 aa7.85□□□□□ -1.15
RBM39-201ENST00000253363 HOXD11P31277 338 aaPredicted RBP7.77□□□□□ -1.17
RBM39-201ENST00000253363 DMRT2Q9Y5R5 561 aa7.77□□□□□ -1.17
RBM39-201ENST00000253363 SLC24A1O60721 1099 aa7.74□□□□□ -1.17
RBM39-201ENST00000253363 FKBP8Q14318 412 aa7.71□□□□□ -1.18
RBM39-201ENST00000253363 AMER1Q5JTC6 1135 aaPredicted RBP7.69□□□□□ -1.18
RBM39-201ENST00000253363 MYCNP04198 464 aaPredicted RBP7.66□□□□□ -1.18
RBM39-201ENST00000253363 ATF5Q9Y2D1 282 aaPredicted RBP7.6□□□□□ -1.19
RBM39-201ENST00000253363 ATXN8OSP0DMR3 200 aa7.59□□□□□ -1.19
RBM39-201ENST00000253363 DCAF8L1A6NGE4 600 aa7.51□□□□□ -1.21
RBM39-201ENST00000253363 POTEDQ86YR6 584 aa7.51□□□□□ -1.21
RBM39-201ENST00000253363 ABCC9O60706 1549 aa7.44□□□□□ -1.22
RBM39-201ENST00000253363 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.44□□□□□ -1.224e-13■■□□□ 11.5
RBM39-201ENST00000253363 U3KPZ7 1027 aaPredicted RBP7.42□□□□□ -1.22
RBM39-201ENST00000253363 MYO15BQ96JP2 1530 aa7.41□□□□□ -1.22
RBM39-201ENST00000253363 NACADO15069 1562 aa7.37□□□□□ -1.23
RBM39-201ENST00000253363 RB1CC1Q8TDY2 1594 aa7.37□□□□□ -1.23
RBM39-201ENST00000253363 SAMD1Q6SPF0 538 aaPredicted RBP7.34□□□□□ -1.23
RBM39-201ENST00000253363 DCAF1Q9Y4B6 1507 aa7.32□□□□□ -1.24
RBM39-201ENST00000253363 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.3□□□□□ -1.24
RBM39-201ENST00000253363 HNRNPUL2Q1KMD3 747 aaKnown RBP7.3□□□□□ -1.24
RBM39-201ENST00000253363 ZNF219Q9P2Y4 722 aaPredicted RBP7.29□□□□□ -1.24
RBM39-201ENST00000253363 SHROOM4Q9ULL8 1493 aa7.28□□□□□ -1.24
RBM39-201ENST00000253363 MKRN4PQ13434 485 aaPredicted RBP7.24□□□□□ -1.25
RBM39-201ENST00000253363 SPDYE4A6NLX3 237 aa7.22□□□□□ -1.25
RBM39-201ENST00000253363 ZCCHC6Q5VYS8 1495 aaKnown RBP7.22□□□□□ -1.25
RBM39-201ENST00000253363 VASPP50552 380 aaPredicted RBP7.16□□□□□ -1.26
RBM39-201ENST00000253363 PLCB2Q00722 1185 aa7.16□□□□□ -1.26
RBM39-201ENST00000253363 IFNLR1Q8IU57 520 aaPredicted RBP7.16□□□□□ -1.26
RBM39-201ENST00000253363 FBXO3Q9UK99 471 aa7.16□□□□□ -1.26
RBM39-201ENST00000253363 SPINK5Q9NQ38 1064 aaPredicted RBP7.15□□□□□ -1.27
RBM39-201ENST00000253363 PROM2Q8N271 834 aa7.13□□□□□ -1.27
RBM39-201ENST00000253363 TRHP20396 242 aaPredicted RBP7.12□□□□□ -1.27
RBM39-201ENST00000253363 DCAF8L2P0C7V8 631 aa7.12□□□□□ -1.27
RBM39-201ENST00000253363 POLA2Q14181 598 aa7.1□□□□□ -1.27
RBM39-201ENST00000253363 PKD2Q13563 968 aa7.08□□□□□ -1.28
RBM39-201ENST00000253363 HAP1P54257 671 aaPredicted RBP7.07□□□□□ -1.28
RBM39-201ENST00000253363 UNC13AQ9UPW8 1703 aa7.06□□□□□ -1.28
RBM39-201ENST00000253363 FBLN2P98095 1184 aa7.04□□□□□ -1.28
RBM39-201ENST00000253363 APLP2Q06481 763 aa7.04□□□□□ -1.28
RBM39-201ENST00000253363 BICRAQ9NZM4 1560 aa7.03□□□□□ -1.28
RBM39-201ENST00000253363 CAPN15O75808 1086 aa7.02□□□□□ -1.29
RBM39-201ENST00000253363 PRKCSHP14314 528 aaPredicted RBP7.01□□□□□ -1.29
RBM39-201ENST00000253363 ABCB7O75027 752 aa7□□□□□ -1.29
RBM39-201ENST00000253363 RNF39Q9H2S5 420 aa6.96□□□□□ -1.3
RBM39-201ENST00000253363 NPM1P06748 294 aaKnown RBP eCLIP6.94□□□□□ -1.3
RBM39-201ENST00000253363 SCRIBQ14160 1630 aa6.94□□□□□ -1.3
RBM39-201ENST00000253363 KDM2AQ9Y2K7 1162 aa6.93□□□□□ -1.3
RBM39-201ENST00000253363 KLHL34Q8N239 644 aa6.92□□□□□ -1.3
RBM39-201ENST00000253363 BCANQ96GW7 911 aa6.9□□□□□ -1.31
RBM39-201ENST00000253363 RGL2O15211 777 aa6.89□□□□□ -1.31
RBM39-201ENST00000253363 ECM2O94769 699 aaPredicted RBP6.89□□□□□ -1.31
RBM39-201ENST00000253363 TAOK2Q9UL54 1235 aa6.89□□□□□ -1.31
RBM39-201ENST00000253363 PAXIP1Q6ZW49 1069 aaPredicted RBP6.88□□□□□ -1.31
RBM39-201ENST00000253363 CFAP44Q96MT7 982 aa6.88□□□□□ -1.31
RBM39-201ENST00000253363 EIF4G1Q04637 1599 aaKnown RBP6.88□□□□□ -1.31
RBM39-201ENST00000253363 OSCARQ8IYS5 282 aa6.87□□□□□ -1.31
RBM39-201ENST00000253363 SPOCK2Q92563 424 aa6.87□□□□□ -1.31
RBM39-201ENST00000253363 VSIG10Q8N0Z9 540 aa6.87□□□□□ -1.31
RBM39-201ENST00000253363 ZNF692Q9BU19 519 aaPredicted RBP6.86□□□□□ -1.31
RBM39-201ENST00000253363 PLCD3Q8N3E9 789 aa6.84□□□□□ -1.31
RBM39-201ENST00000253363 BBXQ8WY36 941 aaPredicted RBP6.83□□□□□ -1.32
RBM39-201ENST00000253363 CC2D2AQ9P2K1 1620 aa6.83□□□□□ -1.32
RBM39-201ENST00000253363 C1QBPQ07021 282 aaKnown RBP6.83□□□□□ -1.32
RBM39-201ENST00000253363 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.83□□□□□ -1.32
RBM39-201ENST00000253363 ZBTB12Q9Y330 459 aaPredicted RBP6.82□□□□□ -1.32
RBM39-201ENST00000253363 TPRNQ4KMQ1 711 aa6.82□□□□□ -1.32
RBM39-201ENST00000253363 PABPN1Q86U42 306 aaKnown RBP eCLIP6.81□□□□□ -1.321e-8■□□□□ 11.3
RBM39-201ENST00000253363 TSHZ2Q9NRE2 1034 aa6.81□□□□□ -1.32
RBM39-201ENST00000253363 MIER1Q8N108 512 aa6.8□□□□□ -1.32
RBM39-201ENST00000253363 DSG3P32926 999 aa6.79□□□□□ -1.32
RBM39-201ENST00000253363 CECR2Q9BXF3 1484 aa6.79□□□□□ -1.32
RBM39-201ENST00000253363 SMARCA2P51531 1590 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms