RNA–Protein interactions for RNA: ENST00000448530.5

VCP-203, Transcript of valosin containing protein, humanhuman

TSL 5

Gene VCP, Length 950 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-203ENST00000448530 NISCHQ9Y2I1 1504 aa48.57■■■■■ 5.37
VCP-203ENST00000448530 CCDC180Q9P1Z9 1646 aa43.45■■■■■ 4.55
VCP-203ENST00000448530 ABCC9O60706 1549 aa43.04■■■■■ 4.48
VCP-203ENST00000448530 RB1CC1Q8TDY2 1594 aa41.18■■■■■ 4.18
VCP-203ENST00000448530 NACADO15069 1562 aa40.98■■■■■ 4.15
VCP-203ENST00000448530 DCAF8L2P0C7V8 631 aa40.92■■■■■ 4.14
VCP-203ENST00000448530 MYO15BQ96JP2 1530 aa40.52■■■■■ 4.08
VCP-203ENST00000448530 ZCCHC6Q5VYS8 1495 aaKnown RBP40.32■■■■■ 4.05
VCP-203ENST00000448530 UNC13AQ9UPW8 1703 aa40.22■■■■■ 4.03
VCP-203ENST00000448530 DCAF1Q9Y4B6 1507 aa40.14■■■■■ 4.02
VCP-203ENST00000448530 PABPN1Q86U42 306 aaKnown RBP eCLIP40.12■■■■■ 4.01
VCP-203ENST00000448530 DNAJC5BQ9UF47 199 aa39.92■■■■□ 3.98
VCP-203ENST00000448530 BICRAQ9NZM4 1560 aa39.88■■■■□ 3.97
VCP-203ENST00000448530 SCRIBQ14160 1630 aa39.62■■■■□ 3.93
VCP-203ENST00000448530 SHROOM4Q9ULL8 1493 aa39.45■■■■□ 3.91
VCP-203ENST00000448530 EIF4G1Q04637 1599 aaKnown RBP38.91■■■■□ 3.82
VCP-203ENST00000448530 CC2D2AQ9P2K1 1620 aa38.89■■■■□ 3.82
VCP-203ENST00000448530 CECR2Q9BXF3 1484 aa38.73■■■■□ 3.79
VCP-203ENST00000448530 SMARCA4P51532 1647 aa37.82■■■■□ 3.64
VCP-203ENST00000448530 NCAPD3P42695 1498 aa37.78■■■■□ 3.64
VCP-203ENST00000448530 ATAD2BQ9ULI0 1458 aa37.73■■■■□ 3.63
VCP-203ENST00000448530 BAZ1AQ9NRL2 1556 aaPredicted RBP37.72■■■■□ 3.63
VCP-203ENST00000448530 SMARCA2P51531 1590 aa37.71■■■■□ 3.63
VCP-203ENST00000448530 HMGXB3Q12766 1538 aa37.56■■■■□ 3.6
VCP-203ENST00000448530 BAZ1BQ9UIG0 1483 aaKnown RBP37.44■■■■□ 3.58
VCP-203ENST00000448530 MROH2BQ7Z745 1585 aa37.42■■■■□ 3.58
VCP-203ENST00000448530 PEG3Q9GZU2 1588 aa37.42■■■■□ 3.58
VCP-203ENST00000448530 ERCC6Q03468 1493 aa37.2■■■■□ 3.54
VCP-203ENST00000448530 NESP48681 1621 aa37.06■■■■□ 3.52
VCP-203ENST00000448530 WIZO95785 1651 aa37.01■■■■□ 3.52
VCP-203ENST00000448530 CUX2O14529 1486 aa36.94■■■■□ 3.5
VCP-203ENST00000448530 LAMC3Q9Y6N6 1575 aa36.91■■■■□ 3.5
VCP-203ENST00000448530 RSF1Q96T23 1441 aaPredicted RBP36.78■■■■□ 3.48
VCP-203ENST00000448530 PDS5BQ9NTI5 1447 aa36.7■■■■□ 3.47
VCP-203ENST00000448530 CADPSQ9ULU8 1353 aa36.67■■■■□ 3.46
VCP-203ENST00000448530 KIF21AQ7Z4S6 1674 aa36.64■■■■□ 3.46
VCP-203ENST00000448530 THOC2Q8NI27 1593 aaKnown RBP36.61■■■■□ 3.45
VCP-203ENST00000448530 TOP2AP11388 1531 aaKnown RBP36.58■■■■□ 3.45
VCP-203ENST00000448530 DNAJC5Q9H3Z4 198 aa36.43■■■■□ 3.42
VCP-203ENST00000448530 MRC2Q9UBG0 1479 aa36.34■■■■□ 3.41
VCP-203ENST00000448530 CFTRP13569 1480 aa36.32■■■■□ 3.41
VCP-203ENST00000448530 CEP164Q9UPV0 1460 aa36.3■■■■□ 3.4
VCP-203ENST00000448530 FANCD2Q9BXW9 1451 aa36.27■■■■□ 3.4
VCP-203ENST00000448530 WDR62O43379 1518 aa36.21■■■■□ 3.39
VCP-203ENST00000448530 CCDC88BA6NC98 1476 aa36.14■■■■□ 3.38
VCP-203ENST00000448530 PRDM2Q13029 1718 aa36.07■■■■□ 3.36
VCP-203ENST00000448530 URB2Q14146 1524 aaKnown RBP35.91■■■■□ 3.34
VCP-203ENST00000448530 ABCC8Q09428 1581 aa35.63■■■■□ 3.29
VCP-203ENST00000448530 TOPBP1Q92547 1522 aa35.62■■■■□ 3.29
VCP-203ENST00000448530 DNMBPQ6XZF7 1577 aa35.55■■■■□ 3.28
VCP-203ENST00000448530 IFT140Q96RY7 1462 aa35.54■■■■□ 3.28
VCP-203ENST00000448530 SUPT5HO00267 1087 aaKnown RBP35.54■■■■□ 3.28
VCP-203ENST00000448530 ZNF608Q9ULD9 1512 aaPredicted RBP35.4■■■■□ 3.26
VCP-203ENST00000448530 OSCARQ8IYS5 282 aa35.35■■■■□ 3.25
VCP-203ENST00000448530 POLA1P09884 1462 aaPredicted RBP35.27■■■■□ 3.24
VCP-203ENST00000448530 EIF4G3O43432 1585 aaKnown RBP35.26■■■■□ 3.24
VCP-203ENST00000448530 TARBP1Q13395 1621 aaKnown RBP35.26■■■■□ 3.24
VCP-203ENST00000448530 SOGA1O94964 1423 aa35.15■■■■□ 3.22
VCP-203ENST00000448530 AQRO60306 1485 aaKnown RBP eCLIP35.15■■■■□ 3.228e-7■■■■□ 26.5
VCP-203ENST00000448530 CUX1P39880 1505 aa35.14■■■■□ 3.22
VCP-203ENST00000448530 RAD54L2Q9Y4B4 1467 aa35.13■■■■□ 3.21
VCP-203ENST00000448530 FGD5Q6ZNL6 1462 aa35.12■■■■□ 3.21
VCP-203ENST00000448530 TRIM41Q8WV44 630 aa35.07■■■■□ 3.2
VCP-203ENST00000448530 TDRD9Q8NDG6 1382 aaKnown RBP35.01■■■■□ 3.2
VCP-203ENST00000448530 WDR97A6NE52 1622 aa34.98■■■■□ 3.19
VCP-203ENST00000448530 CHD1O14646 1710 aa34.95■■■■□ 3.19
VCP-203ENST00000448530 FBLN2P98095 1184 aa34.93■■■■□ 3.18
VCP-203ENST00000448530 SNAPC4Q5SXM2 1469 aa34.82■■■■□ 3.16
VCP-203ENST00000448530 RIMBP3CA6NJZ7 1639 aa34.81■■■■□ 3.16
VCP-203ENST00000448530 RIMBP3BA6NNM3 1639 aa34.81■■■■□ 3.16
VCP-203ENST00000448530 RIMBP3Q9UFD9 1639 aa34.81■■■■□ 3.16
VCP-203ENST00000448530 GRIN2BQ13224 1484 aa34.81■■■■□ 3.16
VCP-203ENST00000448530 MAGI1Q96QZ7 1491 aaPredicted RBP34.77■■■■□ 3.16
VCP-203ENST00000448530 WRNQ14191 1432 aaPredicted RBP eCLIP34.74■■■■□ 3.15
VCP-203ENST00000448530 ARHGEF11O15085 1522 aa34.74■■■■□ 3.15
VCP-203ENST00000448530 ABCA10Q8WWZ4 1543 aa34.74■■■■□ 3.15
VCP-203ENST00000448530 GAPVD1Q14C86 1478 aa34.73■■■■□ 3.15
VCP-203ENST00000448530 CHMP7Q8WUX9 453 aaPredicted RBP34.72■■■■□ 3.15
VCP-203ENST00000448530 TOP2BQ02880 1626 aa34.71■■■■□ 3.15
VCP-203ENST00000448530 BIVM-ERCC5R4GMW8 1640 aa34.71■■■■□ 3.15
VCP-203ENST00000448530 PBRM1Q86U86 1689 aa34.71■■■■□ 3.15
VCP-203ENST00000448530 ABCA5Q8WWZ7 1642 aa34.66■■■■□ 3.14
VCP-203ENST00000448530 SYNJ1O43426 1573 aa34.66■■■■□ 3.14
VCP-203ENST00000448530 SYNJ2O15056 1496 aa34.64■■■■□ 3.14
VCP-203ENST00000448530 CLASP1Q7Z460 1538 aa34.5■■■■□ 3.11
VCP-203ENST00000448530 CYB5RLQ6IPT4 315 aa34.49■■■■□ 3.11
VCP-203ENST00000448530 ARAP1Q96P48 1450 aa34.4■■■■□ 3.1
VCP-203ENST00000448530 ADAMTS12P58397 1594 aa34.37■■■■□ 3.09
VCP-203ENST00000448530 GRIN2AQ12879 1464 aa34.34■■■■□ 3.09
VCP-203ENST00000448530 ERICH3Q5RHP9 1530 aa34.34■■■■□ 3.09
VCP-203ENST00000448530 FHAD1B1AJZ9 1412 aa34.31■■■■□ 3.08
VCP-203ENST00000448530 NUP160Q12769 1436 aa34.18■■■■□ 3.06
VCP-203ENST00000448530 CEP170Q5SW79 1584 aa34.18■■■■□ 3.06
VCP-203ENST00000448530 KIF27Q86VH2 1401 aa34.08■■■■□ 3.05
VCP-203ENST00000448530 TRHP20396 242 aaPredicted RBP34.03■■■■□ 3.04
VCP-203ENST00000448530 SHROOM2Q13796 1616 aa34■■■■□ 3.03
VCP-203ENST00000448530 ERCC6L2Q5T890 1561 aa33.98■■■■□ 3.03
VCP-203ENST00000448530 IGF1RP08069 1367 aa33.96■■■■□ 3.03
VCP-203ENST00000448530 CUL7Q14999 1698 aa33.95■■■■□ 3.03
VCP-203ENST00000448530 JPH4Q96JJ6 628 aa33.88■■■■□ 3.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms