RNA–Protein interactions for RNA: ENST00000528999.5

PUF60-213, Transcript of poly(U) binding splicing factor 60, humanhuman

TSL 3

Gene PUF60, Length 431 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PUF60-213ENST00000528999 NISCHQ9Y2I1 1504 aa23.02■■□□□ 1.28
PUF60-213ENST00000528999 CCDC180Q9P1Z9 1646 aa19.84■□□□□ 0.77
PUF60-213ENST00000528999 ZCCHC6Q5VYS8 1495 aaKnown RBP19.41■□□□□ 0.7
PUF60-213ENST00000528999 DCAF1Q9Y4B6 1507 aa19.14■□□□□ 0.65
PUF60-213ENST00000528999 SHROOM4Q9ULL8 1493 aa18.94■□□□□ 0.62
PUF60-213ENST00000528999 DCAF8L2P0C7V8 631 aa18.8■□□□□ 0.6
PUF60-213ENST00000528999 MYO15BQ96JP2 1530 aa18.77■□□□□ 0.6
PUF60-213ENST00000528999 SUPT5HO00267 1087 aaKnown RBP18.54■□□□□ 0.56
PUF60-213ENST00000528999 NACADO15069 1562 aa18.43■□□□□ 0.54
PUF60-213ENST00000528999 ABCC9O60706 1549 aa18.26■□□□□ 0.51
PUF60-213ENST00000528999 SCRIBQ14160 1630 aa18.18■□□□□ 0.5
PUF60-213ENST00000528999 RB1CC1Q8TDY2 1594 aa18.12■□□□□ 0.49
PUF60-213ENST00000528999 CHIC1Q5VXU3 224 aa18.08■□□□□ 0.48
PUF60-213ENST00000528999 RSF1Q96T23 1441 aaPredicted RBP18.04■□□□□ 0.48
PUF60-213ENST00000528999 CECR2Q9BXF3 1484 aa17.77■□□□□ 0.44
PUF60-213ENST00000528999 BAZ1AQ9NRL2 1556 aaPredicted RBP17.74■□□□□ 0.43
PUF60-213ENST00000528999 MROH2BQ7Z745 1585 aa17.74■□□□□ 0.43
PUF60-213ENST00000528999 UNC13AQ9UPW8 1703 aa17.6■□□□□ 0.41
PUF60-213ENST00000528999 WIZO95785 1651 aa17.56■□□□□ 0.4
PUF60-213ENST00000528999 SMARCA4P51532 1647 aa17.54■□□□□ 0.4
PUF60-213ENST00000528999 TRIM41Q8WV44 630 aa17.5■□□□□ 0.39
PUF60-213ENST00000528999 BICRAQ9NZM4 1560 aa17.49■□□□□ 0.39
PUF60-213ENST00000528999 TOP2AP11388 1531 aaKnown RBP17.49■□□□□ 0.39
PUF60-213ENST00000528999 PEG3Q9GZU2 1588 aa17.4■□□□□ 0.38
PUF60-213ENST00000528999 PABPN1Q86U42 306 aaKnown RBP eCLIP17.34■□□□□ 0.373e-7■□□□□ 10.7
PUF60-213ENST00000528999 CCDC88BA6NC98 1476 aa17.33■□□□□ 0.37
PUF60-213ENST00000528999 LOC105371045A0A1W2PR82 267 aa17.33■□□□□ 0.36
PUF60-213ENST00000528999 EIF4G1Q04637 1599 aaKnown RBP17.31■□□□□ 0.36
PUF60-213ENST00000528999 SMARCA2P51531 1590 aa17.3■□□□□ 0.36
PUF60-213ENST00000528999 ATAD2BQ9ULI0 1458 aa17.2■□□□□ 0.34
PUF60-213ENST00000528999 BAZ1BQ9UIG0 1483 aaKnown RBP17.1■□□□□ 0.33
PUF60-213ENST00000528999 EEA1Q15075 1411 aa17.09■□□□□ 0.33
PUF60-213ENST00000528999 TRIM26Q12899 539 aaPredicted RBP17.06■□□□□ 0.32
PUF60-213ENST00000528999 FAM9AQ8IZU1 332 aaPredicted RBP17.05■□□□□ 0.32
PUF60-213ENST00000528999 PCGF6Q9BYE7 350 aa17.04■□□□□ 0.32
PUF60-213ENST00000528999 NCAPD3P42695 1498 aa17.04■□□□□ 0.32
PUF60-213ENST00000528999 HRCP23327 699 aa17.01■□□□□ 0.31
PUF60-213ENST00000528999 HMGXB3Q12766 1538 aa16.99■□□□□ 0.31
PUF60-213ENST00000528999 ABCC8Q09428 1581 aa16.98■□□□□ 0.31
PUF60-213ENST00000528999 WRNQ14191 1432 aaPredicted RBP eCLIP16.96■□□□□ 0.31
PUF60-213ENST00000528999 CSRNP3Q8WYN3 585 aa16.9■□□□□ 0.3
PUF60-213ENST00000528999 TNIKQ9UKE5 1360 aa16.87■□□□□ 0.29
PUF60-213ENST00000528999 SOGA1O94964 1423 aa16.84■□□□□ 0.29
PUF60-213ENST00000528999 SYNJ1O43426 1573 aa16.77■□□□□ 0.28
PUF60-213ENST00000528999 GOLGA3Q08378 1498 aa16.76■□□□□ 0.27
PUF60-213ENST00000528999 TOP2BQ02880 1626 aa16.74■□□□□ 0.27
PUF60-213ENST00000528999 CFTRP13569 1480 aa16.74■□□□□ 0.27
PUF60-213ENST00000528999 CEP164Q9UPV0 1460 aa16.73■□□□□ 0.27
PUF60-213ENST00000528999 ZEB1P37275 1124 aaPredicted RBP16.73■□□□□ 0.27
PUF60-213ENST00000528999 RUSC2Q8N2Y8 1516 aa16.71■□□□□ 0.27
PUF60-213ENST00000528999 KIF21BO75037 1637 aa16.71■□□□□ 0.27
PUF60-213ENST00000528999 CEP162Q5TB80 1403 aa16.7■□□□□ 0.26
PUF60-213ENST00000528999 BIVM-ERCC5R4GMW8 1640 aa16.7■□□□□ 0.26
PUF60-213ENST00000528999 EHMT2Q96KQ7 1210 aa16.68■□□□□ 0.26
PUF60-213ENST00000528999 UBTFP17480 764 aaKnown RBP16.66■□□□□ 0.26
PUF60-213ENST00000528999 CADPSQ9ULU8 1353 aa16.62■□□□□ 0.25
PUF60-213ENST00000528999 PRDM2Q13029 1718 aa16.56■□□□□ 0.24
PUF60-213ENST00000528999 CUX1P39880 1505 aa16.56■□□□□ 0.24
PUF60-213ENST00000528999 CC2D2AQ9P2K1 1620 aa16.56■□□□□ 0.24
PUF60-213ENST00000528999 ERICH3Q5RHP9 1530 aa16.55■□□□□ 0.24
PUF60-213ENST00000528999 KIF27Q86VH2 1401 aa16.53■□□□□ 0.24
PUF60-213ENST00000528999 PRXQ9BXM0 1461 aa16.53■□□□□ 0.24
PUF60-213ENST00000528999 CLIP1P30622 1438 aa16.49■□□□□ 0.23
PUF60-213ENST00000528999 RAPGEF2Q9Y4G8 1499 aa16.48■□□□□ 0.23
PUF60-213ENST00000528999 VPS8Q8N3P4 1428 aa16.44■□□□□ 0.22
PUF60-213ENST00000528999 PPARGC1BQ86YN6 1023 aaKnown RBP16.37■□□□□ 0.21
PUF60-213ENST00000528999 FANCD2Q9BXW9 1451 aa16.36■□□□□ 0.21
PUF60-213ENST00000528999 APLP2Q06481 763 aa16.36■□□□□ 0.21
PUF60-213ENST00000528999 IGF1RP08069 1367 aa16.35■□□□□ 0.21
PUF60-213ENST00000528999 LAMC3Q9Y6N6 1575 aa16.32■□□□□ 0.2
PUF60-213ENST00000528999 CUX2O14529 1486 aa16.31■□□□□ 0.2
PUF60-213ENST00000528999 FGD5Q6ZNL6 1462 aa16.31■□□□□ 0.2
PUF60-213ENST00000528999 DNMBPQ6XZF7 1577 aa16.3■□□□□ 0.2
PUF60-213ENST00000528999 CARMIL1Q5VZK9 1371 aa16.26■□□□□ 0.19
PUF60-213ENST00000528999 ABCA10Q8WWZ4 1543 aa16.25■□□□□ 0.19
PUF60-213ENST00000528999 CCER1Q8TC90 406 aaPredicted RBP16.24■□□□□ 0.19
PUF60-213ENST00000528999 PDS5BQ9NTI5 1447 aa16.24■□□□□ 0.19
PUF60-213ENST00000528999 TOPBP1Q92547 1522 aa16.24■□□□□ 0.19
PUF60-213ENST00000528999 ARAP1Q96P48 1450 aa16.22■□□□□ 0.19
PUF60-213ENST00000528999 POLA1P09884 1462 aaPredicted RBP16.17■□□□□ 0.18
PUF60-213ENST00000528999 MAP3K1Q13233 1512 aa16.17■□□□□ 0.18
PUF60-213ENST00000528999 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.16■□□□□ 0.18
PUF60-213ENST00000528999 ARHGAP35Q9NRY4 1499 aa16.16■□□□□ 0.18
PUF60-213ENST00000528999 NESP48681 1621 aa16.15■□□□□ 0.18
PUF60-213ENST00000528999 CUL7Q14999 1698 aa16.11■□□□□ 0.17
PUF60-213ENST00000528999 URB2Q14146 1524 aaKnown RBP16.1■□□□□ 0.17
PUF60-213ENST00000528999 TTBK1Q5TCY1 1321 aaPredicted RBP16.1■□□□□ 0.17
PUF60-213ENST00000528999 RAD54L2Q9Y4B4 1467 aa16.1■□□□□ 0.17
PUF60-213ENST00000528999 RANGAP1P46060 587 aaPredicted RBP16.09■□□□□ 0.17
PUF60-213ENST00000528999 FHAD1B1AJZ9 1412 aa16.09■□□□□ 0.17
PUF60-213ENST00000528999 RRBP1Q9P2E9 1410 aaKnown RBP16.05■□□□□ 0.16
PUF60-213ENST00000528999 EFCAB5A4FU69 1503 aa16.04■□□□□ 0.16
PUF60-213ENST00000528999 CLSPNQ9HAW4 1339 aa16.04■□□□□ 0.16
PUF60-213ENST00000528999 WDR97A6NE52 1622 aa16.03■□□□□ 0.16
PUF60-213ENST00000528999 KANK4Q5T7N3 995 aaPredicted RBP16.01■□□□□ 0.15
PUF60-213ENST00000528999 AQRO60306 1485 aaKnown RBP eCLIP16.01■□□□□ 0.152e-6■■■■■ 26.9
PUF60-213ENST00000528999 GAPVD1Q14C86 1478 aa16■□□□□ 0.15
PUF60-213ENST00000528999 ABCA5Q8WWZ7 1642 aa16■□□□□ 0.15
PUF60-213ENST00000528999 HNRNPUL2Q1KMD3 747 aaKnown RBP15.99■□□□□ 0.15
PUF60-213ENST00000528999 TIAM1Q13009 1591 aa15.96■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms