RNA–Protein interactions for RNA: ENST00000403542.6

RBM39-206, Transcript of RNA binding motif protein 39, humanhuman

TSL 2

Gene RBM39, Length 2,883 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM39-206ENST00000403542 NISCHQ9Y2I1 1504 aa23.9■■□□□ 1.42
RBM39-206ENST00000403542 SHROOM4Q9ULL8 1493 aa21.2■□□□□ 0.98
RBM39-206ENST00000403542 SUPT5HO00267 1087 aaKnown RBP20.89■□□□□ 0.93
RBM39-206ENST00000403542 DCAF8L2P0C7V8 631 aa20.56■□□□□ 0.88
RBM39-206ENST00000403542 ZCCHC6Q5VYS8 1495 aaKnown RBP20.2■□□□□ 0.82
RBM39-206ENST00000403542 CHIC1Q5VXU3 224 aa20.11■□□□□ 0.81
RBM39-206ENST00000403542 MYO15BQ96JP2 1530 aa20.09■□□□□ 0.81
RBM39-206ENST00000403542 PCGF6Q9BYE7 350 aa19.95■□□□□ 0.78
RBM39-206ENST00000403542 CCDC180Q9P1Z9 1646 aa19.9■□□□□ 0.78
RBM39-206ENST00000403542 HRCP23327 699 aa19.82■□□□□ 0.76
RBM39-206ENST00000403542 LOC105371045A0A1W2PR82 267 aa19.8■□□□□ 0.76
RBM39-206ENST00000403542 PPARGC1BQ86YN6 1023 aaKnown RBP19.74■□□□□ 0.75
RBM39-206ENST00000403542 EHMT2Q96KQ7 1210 aa19.49■□□□□ 0.71
RBM39-206ENST00000403542 FAM9AQ8IZU1 332 aaPredicted RBP19.4■□□□□ 0.7
RBM39-206ENST00000403542 DCAF1Q9Y4B6 1507 aa19.3■□□□□ 0.68
RBM39-206ENST00000403542 TRIM41Q8WV44 630 aa19.24■□□□□ 0.67
RBM39-206ENST00000403542 TRIM26Q12899 539 aaPredicted RBP19.23■□□□□ 0.67
RBM39-206ENST00000403542 SCRIBQ14160 1630 aa19.2■□□□□ 0.66
RBM39-206ENST00000403542 RSF1Q96T23 1441 aaPredicted RBP19.13■□□□□ 0.65
RBM39-206ENST00000403542 ABCC9O60706 1549 aa19.07■□□□□ 0.64
RBM39-206ENST00000403542 RB1CC1Q8TDY2 1594 aa18.99■□□□□ 0.63
RBM39-206ENST00000403542 CECR2Q9BXF3 1484 aa18.88■□□□□ 0.61
RBM39-206ENST00000403542 TTBK1Q5TCY1 1321 aaPredicted RBP18.86■□□□□ 0.61
RBM39-206ENST00000403542 ZEB1P37275 1124 aaPredicted RBP18.74■□□□□ 0.59
RBM39-206ENST00000403542 MROH2BQ7Z745 1585 aa18.74■□□□□ 0.59
RBM39-206ENST00000403542 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.72■□□□□ 0.59
RBM39-206ENST00000403542 WIZO95785 1651 aa18.64■□□□□ 0.57
RBM39-206ENST00000403542 CCER1Q8TC90 406 aaPredicted RBP18.6■□□□□ 0.57
RBM39-206ENST00000403542 SCAF1Q9H7N4 1312 aaKnown RBP18.54■□□□□ 0.56
RBM39-206ENST00000403542 NACADO15069 1562 aa18.49■□□□□ 0.55
RBM39-206ENST00000403542 ABCC8Q09428 1581 aa18.44■□□□□ 0.54
RBM39-206ENST00000403542 UBTFP17480 764 aaKnown RBP18.39■□□□□ 0.53
RBM39-206ENST00000403542 CCDC88BA6NC98 1476 aa18.39■□□□□ 0.53
RBM39-206ENST00000403542 PABPN1Q86U42 306 aaKnown RBP eCLIP18.36■□□□□ 0.531e-8■□□□□ 11.3
RBM39-206ENST00000403542 SOGA1O94964 1423 aa18.34■□□□□ 0.53
RBM39-206ENST00000403542 BAZ1AQ9NRL2 1556 aaPredicted RBP18.32■□□□□ 0.52
RBM39-206ENST00000403542 RANGAP1P46060 587 aaPredicted RBP18.32■□□□□ 0.52
RBM39-206ENST00000403542 NEUROD1Q13562 356 aa18.28■□□□□ 0.52
RBM39-206ENST00000403542 DIEXFQ68CQ4 756 aaKnown RBP18.28■□□□□ 0.52
RBM39-206ENST00000403542 CEP162Q5TB80 1403 aa18.26■□□□□ 0.51
RBM39-206ENST00000403542 RUSC2Q8N2Y8 1516 aa18.26■□□□□ 0.51
RBM39-206ENST00000403542 CSRNP3Q8WYN3 585 aa18.22■□□□□ 0.51
RBM39-206ENST00000403542 EIF4G1Q04637 1599 aaKnown RBP18.21■□□□□ 0.5
RBM39-206ENST00000403542 HNRNPUL2Q1KMD3 747 aaKnown RBP18.2■□□□□ 0.5
RBM39-206ENST00000403542 ACIN1Q9UKV3 1341 aaKnown RBP18.18■□□□□ 0.5
RBM39-206ENST00000403542 TOP2AP11388 1531 aaKnown RBP18.16■□□□□ 0.5
RBM39-206ENST00000403542 YTHDC1Q96MU7 727 aaKnown RBP18.15■□□□□ 0.5
RBM39-206ENST00000403542 SMARCA2P51531 1590 aa18.14■□□□□ 0.49
RBM39-206ENST00000403542 SMARCA4P51532 1647 aa18.13■□□□□ 0.49
RBM39-206ENST00000403542 GTF3C3Q9Y5Q9 886 aa18.13■□□□□ 0.49
RBM39-206ENST00000403542 TNIKQ9UKE5 1360 aa18.09■□□□□ 0.49
RBM39-206ENST00000403542 WRNQ14191 1432 aaPredicted RBP eCLIP18.05■□□□□ 0.48
RBM39-206ENST00000403542 CENPBP07199 599 aaPredicted RBP18.02■□□□□ 0.48
RBM39-206ENST00000403542 PELP1Q8IZL8 1130 aaKnown RBP18.01■□□□□ 0.47
RBM39-206ENST00000403542 ZNF316A6NFI3 1004 aaPredicted RBP17.98■□□□□ 0.47
RBM39-206ENST00000403542 UNC13AQ9UPW8 1703 aa17.96■□□□□ 0.47
RBM39-206ENST00000403542 GOLGA3Q08378 1498 aa17.95■□□□□ 0.46
RBM39-206ENST00000403542 APLP2Q06481 763 aa17.94■□□□□ 0.46
RBM39-206ENST00000403542 MIER1Q8N108 512 aa17.91■□□□□ 0.46
RBM39-206ENST00000403542 EEA1Q15075 1411 aa17.89■□□□□ 0.45
RBM39-206ENST00000403542 CLIP1P30622 1438 aa17.88■□□□□ 0.45
RBM39-206ENST00000403542 SYNJ1O43426 1573 aa17.85■□□□□ 0.45
RBM39-206ENST00000403542 RAPGEF2Q9Y4G8 1499 aa17.81■□□□□ 0.44
RBM39-206ENST00000403542 CEP164Q9UPV0 1460 aa17.81■□□□□ 0.44
RBM39-206ENST00000403542 BICRAQ9NZM4 1560 aa17.79■□□□□ 0.44
RBM39-206ENST00000403542 ITGAEP38570 1179 aa17.74■□□□□ 0.43
RBM39-206ENST00000403542 VPS8Q8N3P4 1428 aa17.73■□□□□ 0.43
RBM39-206ENST00000403542 BAZ1BQ9UIG0 1483 aaKnown RBP17.72■□□□□ 0.43
RBM39-206ENST00000403542 ATAD2BQ9ULI0 1458 aa17.71■□□□□ 0.43
RBM39-206ENST00000403542 KANK4Q5T7N3 995 aaPredicted RBP17.69■□□□□ 0.42
RBM39-206ENST00000403542 KIF21BO75037 1637 aa17.63■□□□□ 0.41
RBM39-206ENST00000403542 PEG3Q9GZU2 1588 aa17.57■□□□□ 0.4
RBM39-206ENST00000403542 DHX57Q6P158 1386 aaKnown RBP17.52■□□□□ 0.39
RBM39-206ENST00000403542 ATP1B4Q9UN42 357 aaPredicted RBP17.49■□□□□ 0.39
RBM39-206ENST00000403542 ARAP1Q96P48 1450 aa17.48■□□□□ 0.39
RBM39-206ENST00000403542 TOP2BQ02880 1626 aa17.46■□□□□ 0.39
RBM39-206ENST00000403542 P3H3Q8IVL6 736 aa17.45■□□□□ 0.38
RBM39-206ENST00000403542 KCNH8Q96L42 1107 aa17.42■□□□□ 0.38
RBM39-206ENST00000403542 PRXQ9BXM0 1461 aa17.42■□□□□ 0.38
RBM39-206ENST00000403542 CUX1P39880 1505 aa17.39■□□□□ 0.37
RBM39-206ENST00000403542 KIF27Q86VH2 1401 aa17.38■□□□□ 0.37
RBM39-206ENST00000403542 FAM50AQ14320 339 aaKnown RBP17.37■□□□□ 0.37
RBM39-206ENST00000403542 HIRIP3Q9BW71 556 aaPredicted RBP17.37■□□□□ 0.37
RBM39-206ENST00000403542 CCNB3Q8WWL7 1395 aa17.36■□□□□ 0.37
RBM39-206ENST00000403542 SIN3AQ96ST3 1273 aa17.33■□□□□ 0.36
RBM39-206ENST00000403542 SUPT16HQ9Y5B9 1047 aaKnown RBP17.32■□□□□ 0.36
RBM39-206ENST00000403542 ARHGAP35Q9NRY4 1499 aa17.32■□□□□ 0.36
RBM39-206ENST00000403542 ERICH3Q5RHP9 1530 aa17.3■□□□□ 0.36
RBM39-206ENST00000403542 CLSPNQ9HAW4 1339 aa17.3■□□□□ 0.36
RBM39-206ENST00000403542 BIVM-ERCC5R4GMW8 1640 aa17.3■□□□□ 0.36
RBM39-206ENST00000403542 BCANQ96GW7 911 aa17.3■□□□□ 0.36
RBM39-206ENST00000403542 RAB3GAP2Q9H2M9 1393 aa17.29■□□□□ 0.36
RBM39-206ENST00000403542 DDX10Q13206 875 aaKnown RBP17.28■□□□□ 0.36
RBM39-206ENST00000403542 CUX2O14529 1486 aa17.27■□□□□ 0.36
RBM39-206ENST00000403542 RRBP1Q9P2E9 1410 aaKnown RBP17.27■□□□□ 0.36
RBM39-206ENST00000403542 IGF1RP08069 1367 aa17.23■□□□□ 0.35
RBM39-206ENST00000403542 NCAPD3P42695 1498 aa17.22■□□□□ 0.35
RBM39-206ENST00000403542 CFTRP13569 1480 aa17.19■□□□□ 0.34
RBM39-206ENST00000403542 CARMIL1Q5VZK9 1371 aa17.19■□□□□ 0.34
RBM39-206ENST00000403542 PHLDB1Q86UU1 1377 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms