RNA–Protein interactions for RNA: ENST00000419533.1

UBR4-206, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 5,583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-206ENST00000419533 NISCHQ9Y2I1 1504 aa16.03■□□□□ 0.16
UBR4-206ENST00000419533 DCAF8L2P0C7V8 631 aa15.03■□□□□ -0
UBR4-206ENST00000419533 ABCC9O60706 1549 aa14.07□□□□□ -0.16
UBR4-206ENST00000419533 SUPT5HO00267 1087 aaKnown RBP13.93□□□□□ -0.18
UBR4-206ENST00000419533 CCDC180Q9P1Z9 1646 aa13.88□□□□□ -0.19
UBR4-206ENST00000419533 SHROOM4Q9ULL8 1493 aa13.81□□□□□ -0.2
UBR4-206ENST00000419533 PABPN1Q86U42 306 aaKnown RBP eCLIP13.49□□□□□ -0.25
UBR4-206ENST00000419533 RB1CC1Q8TDY2 1594 aa13.46□□□□□ -0.25
UBR4-206ENST00000419533 FAM9AQ8IZU1 332 aaPredicted RBP13.43□□□□□ -0.26
UBR4-206ENST00000419533 EHMT2Q96KQ7 1210 aa13.41□□□□□ -0.26
UBR4-206ENST00000419533 APLP2Q06481 763 aa13.39□□□□□ -0.27
UBR4-206ENST00000419533 NACADO15069 1562 aa13.34□□□□□ -0.27
UBR4-206ENST00000419533 ZCCHC6Q5VYS8 1495 aaKnown RBP13.27□□□□□ -0.29
UBR4-206ENST00000419533 SCRIBQ14160 1630 aa13.15□□□□□ -0.3
UBR4-206ENST00000419533 DCAF1Q9Y4B6 1507 aa13.03□□□□□ -0.32
UBR4-206ENST00000419533 TRIM41Q8WV44 630 aa12.99□□□□□ -0.33
UBR4-206ENST00000419533 PELP1Q8IZL8 1130 aaKnown RBP12.99□□□□□ -0.33
UBR4-206ENST00000419533 RANGAP1P46060 587 aaPredicted RBP12.96□□□□□ -0.33
UBR4-206ENST00000419533 MYO15BQ96JP2 1530 aa12.95□□□□□ -0.34
UBR4-206ENST00000419533 ATP1B4Q9UN42 357 aaPredicted RBP12.94□□□□□ -0.34
UBR4-206ENST00000419533 TTBK1Q5TCY1 1321 aaPredicted RBP12.93□□□□□ -0.34
UBR4-206ENST00000419533 UBTFP17480 764 aaKnown RBP12.86□□□□□ -0.35
UBR4-206ENST00000419533 PCGF6Q9BYE7 350 aa12.75□□□□□ -0.37
UBR4-206ENST00000419533 ZEB1P37275 1124 aaPredicted RBP12.67□□□□□ -0.38
UBR4-206ENST00000419533 CCER1Q8TC90 406 aaPredicted RBP12.66□□□□□ -0.38
UBR4-206ENST00000419533 BAZ1BQ9UIG0 1483 aaKnown RBP12.65□□□□□ -0.38
UBR4-206ENST00000419533 BAZ1AQ9NRL2 1556 aaPredicted RBP12.62□□□□□ -0.39
UBR4-206ENST00000419533 ERCC6Q03468 1493 aa12.61□□□□□ -0.39
UBR4-206ENST00000419533 CECR2Q9BXF3 1484 aa12.59□□□□□ -0.39
UBR4-206ENST00000419533 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.58□□□□□ -0.4
UBR4-206ENST00000419533 HNRNPUL2Q1KMD3 747 aaKnown RBP12.58□□□□□ -0.4
UBR4-206ENST00000419533 MYT1LQ9UL68 1186 aa12.58□□□□□ -0.4
UBR4-206ENST00000419533 SMARCA2P51531 1590 aa12.56□□□□□ -0.4
UBR4-206ENST00000419533 FBLN2P98095 1184 aa12.54□□□□□ -0.4
UBR4-206ENST00000419533 CENPBP07199 599 aaPredicted RBP12.5□□□□□ -0.41
UBR4-206ENST00000419533 MYT1Q01538 1121 aa12.47□□□□□ -0.41
UBR4-206ENST00000419533 RSF1Q96T23 1441 aaPredicted RBP12.42□□□□□ -0.42
UBR4-206ENST00000419533 PDS5BQ9NTI5 1447 aa12.41□□□□□ -0.42
UBR4-206ENST00000419533 PPARGC1BQ86YN6 1023 aaKnown RBP12.39□□□□□ -0.43
UBR4-206ENST00000419533 EIF4G1Q04637 1599 aaKnown RBP12.37□□□□□ -0.43
UBR4-206ENST00000419533 ITGAEP38570 1179 aa12.37□□□□□ -0.43
UBR4-206ENST00000419533 ERICH6Q7L0X2 663 aa12.36□□□□□ -0.43
UBR4-206ENST00000419533 NEFLP07196 543 aa12.35□□□□□ -0.43
UBR4-206ENST00000419533 ATAD2BQ9ULI0 1458 aa12.33□□□□□ -0.44
UBR4-206ENST00000419533 TRIM26Q12899 539 aaPredicted RBP12.32□□□□□ -0.44
UBR4-206ENST00000419533 SMARCA4P51532 1647 aa12.31□□□□□ -0.44
UBR4-206ENST00000419533 CHMP7Q8WUX9 453 aaPredicted RBP12.3□□□□□ -0.44
UBR4-206ENST00000419533 MROH2BQ7Z745 1585 aa12.29□□□□□ -0.44
UBR4-206ENST00000419533 CC2D2AQ9P2K1 1620 aa12.27□□□□□ -0.44
UBR4-206ENST00000419533 NPM1P06748 294 aaKnown RBP eCLIP12.27□□□□□ -0.45
UBR4-206ENST00000419533 CHIC1Q5VXU3 224 aa12.26□□□□□ -0.45
UBR4-206ENST00000419533 POLR3GLQ9BT43 218 aa12.25□□□□□ -0.45
UBR4-206ENST00000419533 HRCP23327 699 aa12.25□□□□□ -0.45
UBR4-206ENST00000419533 NCAPD3P42695 1498 aa12.24□□□□□ -0.45
UBR4-206ENST00000419533 CADPSQ9ULU8 1353 aa12.24□□□□□ -0.45
UBR4-206ENST00000419533 BICRAQ9NZM4 1560 aa12.21□□□□□ -0.45
UBR4-206ENST00000419533 TOP2AP11388 1531 aaKnown RBP12.2□□□□□ -0.46
UBR4-206ENST00000419533 YTHDC1Q96MU7 727 aaKnown RBP12.2□□□□□ -0.46
UBR4-206ENST00000419533 LOC105371045A0A1W2PR82 267 aa12.19□□□□□ -0.46
UBR4-206ENST00000419533 CEP164Q9UPV0 1460 aa12.17□□□□□ -0.46
UBR4-206ENST00000419533 DNAJC5BQ9UF47 199 aa12.14□□□□□ -0.47
UBR4-206ENST00000419533 FAM50AQ14320 339 aaKnown RBP12.14□□□□□ -0.47
UBR4-206ENST00000419533 SLC4A1APQ9BWU0 796 aaKnown RBP12.13□□□□□ -0.47
UBR4-206ENST00000419533 WRNQ14191 1432 aaPredicted RBP eCLIP12.12□□□□□ -0.47
UBR4-206ENST00000419533 CCDC88BA6NC98 1476 aa12.12□□□□□ -0.47
UBR4-206ENST00000419533 WIZO95785 1651 aa12.12□□□□□ -0.47
UBR4-206ENST00000419533 CSRNP3Q8WYN3 585 aa12.11□□□□□ -0.47
UBR4-206ENST00000419533 HMGXB3Q12766 1538 aa12.11□□□□□ -0.47
UBR4-206ENST00000419533 ABCC8Q09428 1581 aa12.11□□□□□ -0.47
UBR4-206ENST00000419533 UNC13AQ9UPW8 1703 aa12.09□□□□□ -0.47
UBR4-206ENST00000419533 TRIM52Q96A61 297 aa12.09□□□□□ -0.47
UBR4-206ENST00000419533 FANCD2Q9BXW9 1451 aa12.07□□□□□ -0.48
UBR4-206ENST00000419533 CDK11AQ9UQ88 783 aaPredicted RBP12.07□□□□□ -0.48
UBR4-206ENST00000419533 KIF27Q86VH2 1401 aa12.05□□□□□ -0.48
UBR4-206ENST00000419533 CNGB1Q14028 1251 aaPredicted RBP12.03□□□□□ -0.48
UBR4-206ENST00000419533 SOGA1O94964 1423 aa12.02□□□□□ -0.48
UBR4-206ENST00000419533 DAXXQ9UER7 740 aaPredicted RBP12□□□□□ -0.49
UBR4-206ENST00000419533 P3H3Q8IVL6 736 aa11.97□□□□□ -0.49
UBR4-206ENST00000419533 MRC2Q9UBG0 1479 aa11.96□□□□□ -0.49
UBR4-206ENST00000419533 OSCARQ8IYS5 282 aa11.96□□□□□ -0.49
UBR4-206ENST00000419533 EEA1Q15075 1411 aa11.96□□□□□ -0.5
UBR4-206ENST00000419533 CUX2O14529 1486 aa11.95□□□□□ -0.5
UBR4-206ENST00000419533 LAMC3Q9Y6N6 1575 aa11.92□□□□□ -0.5
UBR4-206ENST00000419533 TRHP20396 242 aaPredicted RBP11.92□□□□□ -0.5
UBR4-206ENST00000419533 NEUROD1Q13562 356 aa11.91□□□□□ -0.5
UBR4-206ENST00000419533 TDRD9Q8NDG6 1382 aaKnown RBP11.9□□□□□ -0.5
UBR4-206ENST00000419533 ARID3CA6NKF2 412 aa11.9□□□□□ -0.5
UBR4-206ENST00000419533 BCANQ96GW7 911 aa11.89□□□□□ -0.51
UBR4-206ENST00000419533 ZNF326Q5BKZ1 582 aaKnown RBP11.89□□□□□ -0.51
UBR4-206ENST00000419533 CFTRP13569 1480 aa11.88□□□□□ -0.51
UBR4-206ENST00000419533 ESF1Q9H501 851 aaKnown RBP11.88□□□□□ -0.51
UBR4-206ENST00000419533 NESP48681 1621 aa11.88□□□□□ -0.51
UBR4-206ENST00000419533 CARMIL2Q6F5E8 1435 aa11.85□□□□□ -0.51
UBR4-206ENST00000419533 CARMIL1Q5VZK9 1371 aa11.85□□□□□ -0.51
UBR4-206ENST00000419533 ZNF777Q9ULD5 760 aaPredicted RBP11.84□□□□□ -0.51
UBR4-206ENST00000419533 IFT140Q96RY7 1462 aa11.83□□□□□ -0.52
UBR4-206ENST00000419533 PEG3Q9GZU2 1588 aa11.82□□□□□ -0.52
UBR4-206ENST00000419533 CLSPNQ9HAW4 1339 aa11.81□□□□□ -0.52
UBR4-206ENST00000419533 PLEKHD1A6NEE1 506 aa11.81□□□□□ -0.52
UBR4-206ENST00000419533 DIEXFQ68CQ4 756 aaKnown RBP11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms