RNA–Protein interactions for RNA: ENST00000621774.4

NME4-212, Transcript of NME/NM23 nucleoside diphosphate kinase 4, humanhuman

TSL 3 BASIC

Gene NME4, Length 904 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME4-212ENST00000621774 NISCHQ9Y2I1 1504 aa43.67■■■■■ 4.58
NME4-212ENST00000621774 ABCC9O60706 1549 aa39.42■■■■□ 3.9
NME4-212ENST00000621774 CCDC180Q9P1Z9 1646 aa39.16■■■■□ 3.86
NME4-212ENST00000621774 RB1CC1Q8TDY2 1594 aa37.37■■■■□ 3.57
NME4-212ENST00000621774 DNAJC5BQ9UF47 199 aa37.25■■■■□ 3.55
NME4-212ENST00000621774 NACADO15069 1562 aa37.08■■■■□ 3.53
NME4-212ENST00000621774 DCAF8L2P0C7V8 631 aa36.97■■■■□ 3.51
NME4-212ENST00000621774 PABPN1Q86U42 306 aaKnown RBP eCLIP36.74■■■■□ 3.471e-8■■□□□ 14.2
NME4-212ENST00000621774 UNC13AQ9UPW8 1703 aa36.62■■■■□ 3.45
NME4-212ENST00000621774 MYO15BQ96JP2 1530 aa36.51■■■■□ 3.44
NME4-212ENST00000621774 BICRAQ9NZM4 1560 aa36.4■■■■□ 3.42
NME4-212ENST00000621774 ZCCHC6Q5VYS8 1495 aaKnown RBP36.14■■■■□ 3.38
NME4-212ENST00000621774 DCAF1Q9Y4B6 1507 aa36.01■■■■□ 3.36
NME4-212ENST00000621774 SCRIBQ14160 1630 aa35.74■■■■□ 3.31
NME4-212ENST00000621774 SHROOM4Q9ULL8 1493 aa35.72■■■■□ 3.31
NME4-212ENST00000621774 CC2D2AQ9P2K1 1620 aa35.58■■■■□ 3.29
NME4-212ENST00000621774 CECR2Q9BXF3 1484 aa35.49■■■■□ 3.27
NME4-212ENST00000621774 EIF4G1Q04637 1599 aaKnown RBP35.46■■■■□ 3.27
NME4-212ENST00000621774 NCAPD3P42695 1498 aa34.29■■■■□ 3.08
NME4-212ENST00000621774 DNAJC5Q9H3Z4 198 aa34.21■■■■□ 3.07
NME4-212ENST00000621774 ATAD2BQ9ULI0 1458 aa34.18■■■■□ 3.06
NME4-212ENST00000621774 SMARCA4P51532 1647 aa34.08■■■■□ 3.05
NME4-212ENST00000621774 SMARCA2P51531 1590 aa33.99■■■■□ 3.03
NME4-212ENST00000621774 ERCC6Q03468 1493 aa33.96■■■■□ 3.03
NME4-212ENST00000621774 HMGXB3Q12766 1538 aa33.96■■■■□ 3.03
NME4-212ENST00000621774 CUX2O14529 1486 aa33.95■■■■□ 3.02
NME4-212ENST00000621774 NESP48681 1621 aa33.86■■■■□ 3.01
NME4-212ENST00000621774 BAZ1AQ9NRL2 1556 aaPredicted RBP33.85■■■■□ 3.01
NME4-212ENST00000621774 BAZ1BQ9UIG0 1483 aaKnown RBP33.79■■■■□ 3
NME4-212ENST00000621774 PEG3Q9GZU2 1588 aa33.73■■■□□ 2.99
NME4-212ENST00000621774 MROH2BQ7Z745 1585 aa33.68■■■□□ 2.98
NME4-212ENST00000621774 LAMC3Q9Y6N6 1575 aa33.48■■■□□ 2.95
NME4-212ENST00000621774 THOC2Q8NI27 1593 aaKnown RBP33.47■■■□□ 2.95
NME4-212ENST00000621774 KIF21AQ7Z4S6 1674 aa33.36■■■□□ 2.93
NME4-212ENST00000621774 PDS5BQ9NTI5 1447 aa33.3■■■□□ 2.92
NME4-212ENST00000621774 WIZO95785 1651 aa33.27■■■□□ 2.92
NME4-212ENST00000621774 CADPSQ9ULU8 1353 aa33.24■■■□□ 2.91
NME4-212ENST00000621774 MRC2Q9UBG0 1479 aa33.04■■■□□ 2.88
NME4-212ENST00000621774 WDR62O43379 1518 aa32.97■■■□□ 2.87
NME4-212ENST00000621774 RSF1Q96T23 1441 aaPredicted RBP32.94■■■□□ 2.86
NME4-212ENST00000621774 CEP164Q9UPV0 1460 aa32.86■■■□□ 2.85
NME4-212ENST00000621774 FANCD2Q9BXW9 1451 aa32.85■■■□□ 2.85
NME4-212ENST00000621774 CFTRP13569 1480 aa32.83■■■□□ 2.85
NME4-212ENST00000621774 TOP2AP11388 1531 aaKnown RBP32.77■■■□□ 2.84
NME4-212ENST00000621774 TRIM41Q8WV44 630 aa32.64■■■□□ 2.82
NME4-212ENST00000621774 URB2Q14146 1524 aaKnown RBP32.63■■■□□ 2.81
NME4-212ENST00000621774 CCDC88BA6NC98 1476 aa32.48■■■□□ 2.79
NME4-212ENST00000621774 OSCARQ8IYS5 282 aa32.44■■■□□ 2.78
NME4-212ENST00000621774 PRDM2Q13029 1718 aa32.43■■■□□ 2.78
NME4-212ENST00000621774 ZNF608Q9ULD9 1512 aaPredicted RBP32.27■■■□□ 2.76
NME4-212ENST00000621774 TOPBP1Q92547 1522 aa32.22■■■□□ 2.75
NME4-212ENST00000621774 IFT140Q96RY7 1462 aa32.22■■■□□ 2.75
NME4-212ENST00000621774 ABCC8Q09428 1581 aa32.07■■■□□ 2.72
NME4-212ENST00000621774 DNMBPQ6XZF7 1577 aa32.06■■■□□ 2.72
NME4-212ENST00000621774 RIMBP3CA6NJZ7 1639 aa32.03■■■□□ 2.72
NME4-212ENST00000621774 RIMBP3BA6NNM3 1639 aa32.03■■■□□ 2.72
NME4-212ENST00000621774 RIMBP3Q9UFD9 1639 aa32.03■■■□□ 2.72
NME4-212ENST00000621774 EIF4G3O43432 1585 aaKnown RBP32.01■■■□□ 2.71
NME4-212ENST00000621774 AQRO60306 1485 aaKnown RBP eCLIP31.97■■■□□ 2.712e-7■■■■■ 32.9
NME4-212ENST00000621774 TARBP1Q13395 1621 aaKnown RBP31.96■■■□□ 2.71
NME4-212ENST00000621774 ARHGEF11O15085 1522 aa31.9■■■□□ 2.7
NME4-212ENST00000621774 POLA1P09884 1462 aaPredicted RBP31.89■■■□□ 2.7
NME4-212ENST00000621774 RAD54L2Q9Y4B4 1467 aa31.83■■■□□ 2.69
NME4-212ENST00000621774 CHD1O14646 1710 aa31.82■■■□□ 2.68
NME4-212ENST00000621774 FBLN2P98095 1184 aa31.75■■■□□ 2.67
NME4-212ENST00000621774 SOGA1O94964 1423 aa31.75■■■□□ 2.67
NME4-212ENST00000621774 TDRD9Q8NDG6 1382 aaKnown RBP31.74■■■□□ 2.67
NME4-212ENST00000621774 CYB5RLQ6IPT4 315 aa31.73■■■□□ 2.67
NME4-212ENST00000621774 FGD5Q6ZNL6 1462 aa31.66■■■□□ 2.66
NME4-212ENST00000621774 CUX1P39880 1505 aa31.65■■■□□ 2.66
NME4-212ENST00000621774 ARAP1Q96P48 1450 aa31.6■■■□□ 2.65
NME4-212ENST00000621774 SNAPC4Q5SXM2 1469 aa31.58■■■□□ 2.65
NME4-212ENST00000621774 WDR97A6NE52 1622 aa31.51■■■□□ 2.63
NME4-212ENST00000621774 CHMP7Q8WUX9 453 aaPredicted RBP31.47■■■□□ 2.63
NME4-212ENST00000621774 CLASP1Q7Z460 1538 aa31.45■■■□□ 2.63
NME4-212ENST00000621774 GRIN2BQ13224 1484 aa31.45■■■□□ 2.62
NME4-212ENST00000621774 MAGI1Q96QZ7 1491 aaPredicted RBP31.44■■■□□ 2.62
NME4-212ENST00000621774 SUPT5HO00267 1087 aaKnown RBP31.39■■■□□ 2.62
NME4-212ENST00000621774 TRHP20396 242 aaPredicted RBP31.38■■■□□ 2.61
NME4-212ENST00000621774 SYNJ1O43426 1573 aa31.36■■■□□ 2.61
NME4-212ENST00000621774 SYNJ2O15056 1496 aa31.36■■■□□ 2.61
NME4-212ENST00000621774 GAPVD1Q14C86 1478 aa31.34■■■□□ 2.61
NME4-212ENST00000621774 PBRM1Q86U86 1689 aa31.32■■■□□ 2.6
NME4-212ENST00000621774 ABCA10Q8WWZ4 1543 aa31.28■■■□□ 2.6
NME4-212ENST00000621774 ABCA5Q8WWZ7 1642 aa31.24■■■□□ 2.59
NME4-212ENST00000621774 WRNQ14191 1432 aaPredicted RBP eCLIP31.1■■■□□ 2.572e-6■■■□□ 15
NME4-212ENST00000621774 GRIN2AQ12879 1464 aa31.06■■■□□ 2.56
NME4-212ENST00000621774 TOP2BQ02880 1626 aa31.05■■■□□ 2.56
NME4-212ENST00000621774 BIVM-ERCC5R4GMW8 1640 aa31.05■■■□□ 2.56
NME4-212ENST00000621774 ERCC6L2Q5T890 1561 aa31.03■■■□□ 2.56
NME4-212ENST00000621774 ADAMTS12P58397 1594 aa31■■■□□ 2.55
NME4-212ENST00000621774 CEP170Q5SW79 1584 aa30.98■■■□□ 2.55
NME4-212ENST00000621774 NUP160Q12769 1436 aa30.98■■■□□ 2.55
NME4-212ENST00000621774 FHAD1B1AJZ9 1412 aa30.92■■■□□ 2.54
NME4-212ENST00000621774 ERICH3Q5RHP9 1530 aa30.86■■■□□ 2.53
NME4-212ENST00000621774 SHROOM2Q13796 1616 aa30.84■■■□□ 2.53
NME4-212ENST00000621774 JPH4Q96JJ6 628 aa30.7■■■□□ 2.51
NME4-212ENST00000621774 PRG4Q92954 1404 aaPredicted RBP30.7■■■□□ 2.5
NME4-212ENST00000621774 RUSC2Q8N2Y8 1516 aa30.57■■■□□ 2.48
NME4-212ENST00000621774 KIF13AQ9H1H9 1805 aa30.53■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms