RNA–Protein interactions for RNA: ENST00000492779.5

RBM39-237, Transcript of RNA binding motif protein 39, humanhuman

TSL 2

Gene RBM39, Length 2,316 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM39-237ENST00000492779 NISCHQ9Y2I1 1504 aa14.63□□□□□ -0.07
RBM39-237ENST00000492779 CCDC180Q9P1Z9 1646 aa12.71□□□□□ -0.37
RBM39-237ENST00000492779 ABCC9O60706 1549 aa12.53□□□□□ -0.4
RBM39-237ENST00000492779 DCAF8L2P0C7V8 631 aa12.44□□□□□ -0.42
RBM39-237ENST00000492779 ZCCHC6Q5VYS8 1495 aaKnown RBP12.22□□□□□ -0.45
RBM39-237ENST00000492779 SHROOM4Q9ULL8 1493 aa12.03□□□□□ -0.48
RBM39-237ENST00000492779 DCAF1Q9Y4B6 1507 aa11.95□□□□□ -0.5
RBM39-237ENST00000492779 NACADO15069 1562 aa11.95□□□□□ -0.5
RBM39-237ENST00000492779 RB1CC1Q8TDY2 1594 aa11.92□□□□□ -0.5
RBM39-237ENST00000492779 SCRIBQ14160 1630 aa11.87□□□□□ -0.51
RBM39-237ENST00000492779 MYO15BQ96JP2 1530 aa11.87□□□□□ -0.51
RBM39-237ENST00000492779 PABPN1Q86U42 306 aaKnown RBP eCLIP11.87□□□□□ -0.511e-8■□□□□ 10.4
RBM39-237ENST00000492779 UNC13AQ9UPW8 1703 aa11.74□□□□□ -0.53
RBM39-237ENST00000492779 CHIC1Q5VXU3 224 aa11.68□□□□□ -0.54
RBM39-237ENST00000492779 BICRAQ9NZM4 1560 aa11.67□□□□□ -0.54
RBM39-237ENST00000492779 CECR2Q9BXF3 1484 aa11.52□□□□□ -0.56
RBM39-237ENST00000492779 SUPT5HO00267 1087 aaKnown RBP11.43□□□□□ -0.58
RBM39-237ENST00000492779 DNAJC5BQ9UF47 199 aa11.42□□□□□ -0.58
RBM39-237ENST00000492779 MROH2BQ7Z745 1585 aa11.37□□□□□ -0.59
RBM39-237ENST00000492779 EIF4G1Q04637 1599 aaKnown RBP11.32□□□□□ -0.6
RBM39-237ENST00000492779 RSF1Q96T23 1441 aaPredicted RBP11.32□□□□□ -0.6
RBM39-237ENST00000492779 SMARCA4P51532 1647 aa11.28□□□□□ -0.6
RBM39-237ENST00000492779 BAZ1AQ9NRL2 1556 aaPredicted RBP11.26□□□□□ -0.61
RBM39-237ENST00000492779 WIZO95785 1651 aa11.25□□□□□ -0.61
RBM39-237ENST00000492779 CC2D2AQ9P2K1 1620 aa11.24□□□□□ -0.61
RBM39-237ENST00000492779 SLC24A1O60721 1099 aa11.21□□□□□ -0.62
RBM39-237ENST00000492779 ATAD2BQ9ULI0 1458 aa11.2□□□□□ -0.62
RBM39-237ENST00000492779 BAZ1BQ9UIG0 1483 aaKnown RBP11.11□□□□□ -0.63
RBM39-237ENST00000492779 NCAPD3P42695 1498 aa11.1□□□□□ -0.63
RBM39-237ENST00000492779 SMARCA2P51531 1590 aa11.09□□□□□ -0.63
RBM39-237ENST00000492779 PEG3Q9GZU2 1588 aa11.08□□□□□ -0.64
RBM39-237ENST00000492779 TOP2AP11388 1531 aaKnown RBP11.02□□□□□ -0.64
RBM39-237ENST00000492779 CCDC88BA6NC98 1476 aa11.01□□□□□ -0.65
RBM39-237ENST00000492779 PPARGC1BQ86YN6 1023 aaKnown RBP11.01□□□□□ -0.65
RBM39-237ENST00000492779 AEBP2Q6ZN18 517 aaPredicted RBP11.01□□□□□ -0.65
RBM39-237ENST00000492779 HMGXB3Q12766 1538 aa10.99□□□□□ -0.65
RBM39-237ENST00000492779 HRCP23327 699 aa10.98□□□□□ -0.65
RBM39-237ENST00000492779 PCGF6Q9BYE7 350 aa10.97□□□□□ -0.65
RBM39-237ENST00000492779 LOC105371045A0A1W2PR82 267 aa10.96□□□□□ -0.66
RBM39-237ENST00000492779 NESP48681 1621 aa10.95□□□□□ -0.66
RBM39-237ENST00000492779 EHMT2Q96KQ7 1210 aa10.86□□□□□ -0.67
RBM39-237ENST00000492779 CADPSQ9ULU8 1353 aa10.84□□□□□ -0.67
RBM39-237ENST00000492779 CFTRP13569 1480 aa10.8□□□□□ -0.68
RBM39-237ENST00000492779 ABCC8Q09428 1581 aa10.76□□□□□ -0.69
RBM39-237ENST00000492779 FANCD2Q9BXW9 1451 aa10.73□□□□□ -0.69
RBM39-237ENST00000492779 LAMC3Q9Y6N6 1575 aa10.71□□□□□ -0.7
RBM39-237ENST00000492779 ERCC6Q03468 1493 aa10.69□□□□□ -0.7
RBM39-237ENST00000492779 KIF21AQ7Z4S6 1674 aa10.69□□□□□ -0.7
RBM39-237ENST00000492779 PDS5BQ9NTI5 1447 aa10.68□□□□□ -0.7
RBM39-237ENST00000492779 TRIM41Q8WV44 630 aa10.67□□□□□ -0.7
RBM39-237ENST00000492779 PELP1Q8IZL8 1130 aaKnown RBP10.66□□□□□ -0.7
RBM39-237ENST00000492779 CEP164Q9UPV0 1460 aa10.65□□□□□ -0.71
RBM39-237ENST00000492779 WRNQ14191 1432 aaPredicted RBP eCLIP10.63□□□□□ -0.71
RBM39-237ENST00000492779 URB2Q14146 1524 aaKnown RBP10.63□□□□□ -0.71
RBM39-237ENST00000492779 SYNJ1O43426 1573 aa10.62□□□□□ -0.71
RBM39-237ENST00000492779 CUX1P39880 1505 aa10.62□□□□□ -0.71
RBM39-237ENST00000492779 FAM9AQ8IZU1 332 aaPredicted RBP10.62□□□□□ -0.71
RBM39-237ENST00000492779 PRDM2Q13029 1718 aa10.58□□□□□ -0.72
RBM39-237ENST00000492779 TOPBP1Q92547 1522 aa10.57□□□□□ -0.72
RBM39-237ENST00000492779 RAD54L2Q9Y4B4 1467 aa10.57□□□□□ -0.72
RBM39-237ENST00000492779 MRC2Q9UBG0 1479 aa10.56□□□□□ -0.72
RBM39-237ENST00000492779 TRIM26Q12899 539 aaPredicted RBP10.55□□□□□ -0.72
RBM39-237ENST00000492779 THOC2Q8NI27 1593 aaKnown RBP10.54□□□□□ -0.72
RBM39-237ENST00000492779 FGD5Q6ZNL6 1462 aa10.54□□□□□ -0.72
RBM39-237ENST00000492779 RUSC2Q8N2Y8 1516 aa10.54□□□□□ -0.72
RBM39-237ENST00000492779 SOGA1O94964 1423 aa10.53□□□□□ -0.72
RBM39-237ENST00000492779 POLA1P09884 1462 aaPredicted RBP10.53□□□□□ -0.72
RBM39-237ENST00000492779 TDRD9Q8NDG6 1382 aaKnown RBP10.52□□□□□ -0.73
RBM39-237ENST00000492779 DNMBPQ6XZF7 1577 aa10.51□□□□□ -0.73
RBM39-237ENST00000492779 TOP2BQ02880 1626 aa10.51□□□□□ -0.73
RBM39-237ENST00000492779 CUX2O14529 1486 aa10.51□□□□□ -0.73
RBM39-237ENST00000492779 PHF23Q9BUL5 403 aaPredicted RBP10.5□□□□□ -0.73
RBM39-237ENST00000492779 WDR62O43379 1518 aa10.5□□□□□ -0.73
RBM39-237ENST00000492779 ZNF608Q9ULD9 1512 aaPredicted RBP10.49□□□□□ -0.73
RBM39-237ENST00000492779 AQRO60306 1485 aaKnown RBP eCLIP10.47□□□□□ -0.734e-11■■■■□ 22.7
RBM39-237ENST00000492779 BIVM-ERCC5R4GMW8 1640 aa10.46□□□□□ -0.73
RBM39-237ENST00000492779 MYT1Q01538 1121 aa10.45□□□□□ -0.74
RBM39-237ENST00000492779 TARBP1Q13395 1621 aaKnown RBP10.41□□□□□ -0.74
RBM39-237ENST00000492779 PLPPR3Q6T4P5 718 aa10.4□□□□□ -0.74
RBM39-237ENST00000492779 IFT140Q96RY7 1462 aa10.38□□□□□ -0.75
RBM39-237ENST00000492779 ABCA10Q8WWZ4 1543 aa10.38□□□□□ -0.75
RBM39-237ENST00000492779 FBLN2P98095 1184 aa10.38□□□□□ -0.75
RBM39-237ENST00000492779 CSRNP3Q8WYN3 585 aa10.36□□□□□ -0.75
RBM39-237ENST00000492779 IGF1RP08069 1367 aa10.36□□□□□ -0.75
RBM39-237ENST00000492779 SCAF1Q9H7N4 1312 aaKnown RBP10.36□□□□□ -0.75
RBM39-237ENST00000492779 KIF27Q86VH2 1401 aa10.35□□□□□ -0.75
RBM39-237ENST00000492779 GAPVD1Q14C86 1478 aa10.35□□□□□ -0.75
RBM39-237ENST00000492779 RANGAP1P46060 587 aaPredicted RBP10.35□□□□□ -0.75
RBM39-237ENST00000492779 EIF4G3O43432 1585 aaKnown RBP10.33□□□□□ -0.76
RBM39-237ENST00000492779 WDR97A6NE52 1622 aa10.33□□□□□ -0.76
RBM39-237ENST00000492779 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.3□□□□□ -0.76
RBM39-237ENST00000492779 ABCA5Q8WWZ7 1642 aa10.3□□□□□ -0.76
RBM39-237ENST00000492779 RTN4Q9NQC3 1192 aaKnown RBP10.3□□□□□ -0.76
RBM39-237ENST00000492779 SNAPC4Q5SXM2 1469 aa10.29□□□□□ -0.76
RBM39-237ENST00000492779 TTBK1Q5TCY1 1321 aaPredicted RBP10.28□□□□□ -0.76
RBM39-237ENST00000492779 CARMIL1Q5VZK9 1371 aa10.28□□□□□ -0.76
RBM39-237ENST00000492779 RAPGEF2Q9Y4G8 1499 aa10.28□□□□□ -0.76
RBM39-237ENST00000492779 UBTFP17480 764 aaKnown RBP10.27□□□□□ -0.77
RBM39-237ENST00000492779 CHMP7Q8WUX9 453 aaPredicted RBP10.27□□□□□ -0.77
RBM39-237ENST00000492779 GRIN2BQ13224 1484 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms