RNA–Protein interactions for RNA: ENST00000355238.10

SYNCRIP-201, Transcript of synaptotagmin binding cytoplasmic RNA interacting protein, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SYNCRIP, Length 6,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNCRIP-201ENST00000355238 DCAF8L2P0C7V8 631 aa20.74■□□□□ 0.91
SYNCRIP-201ENST00000355238 PELP1Q8IZL8 1130 aaKnown RBP20.64■□□□□ 0.89
SYNCRIP-201ENST00000355238 SUPT5HO00267 1087 aaKnown RBP20.36■□□□□ 0.85
SYNCRIP-201ENST00000355238 MYT1Q01538 1121 aa20.14■□□□□ 0.81
SYNCRIP-201ENST00000355238 CENPBP07199 599 aaPredicted RBP19.85■□□□□ 0.77
SYNCRIP-201ENST00000355238 NISCHQ9Y2I1 1504 aa19.77■□□□□ 0.75
SYNCRIP-201ENST00000355238 PCGF6Q9BYE7 350 aa19.73■□□□□ 0.75
SYNCRIP-201ENST00000355238 ZEB1P37275 1124 aaPredicted RBP19.73■□□□□ 0.75
SYNCRIP-201ENST00000355238 SHROOM4Q9ULL8 1493 aa19.72■□□□□ 0.75
SYNCRIP-201ENST00000355238 ERICH6Q7L0X2 663 aa19.7■□□□□ 0.74
SYNCRIP-201ENST00000355238 CCER1Q8TC90 406 aaPredicted RBP19.65■□□□□ 0.74
SYNCRIP-201ENST00000355238 EHMT2Q96KQ7 1210 aa19.6■□□□□ 0.73
SYNCRIP-201ENST00000355238 APLP2Q06481 763 aa19.55■□□□□ 0.72
SYNCRIP-201ENST00000355238 NEFLP07196 543 aa19.21■□□□□ 0.67
SYNCRIP-201ENST00000355238 FAM9AQ8IZU1 332 aaPredicted RBP19.18■□□□□ 0.66
SYNCRIP-201ENST00000355238 TTBK1Q5TCY1 1321 aaPredicted RBP19.1■□□□□ 0.65
SYNCRIP-201ENST00000355238 HRCP23327 699 aa19.09■□□□□ 0.65
SYNCRIP-201ENST00000355238 YTHDC1Q96MU7 727 aaKnown RBP19.06■□□□□ 0.64
SYNCRIP-201ENST00000355238 TRIM26Q12899 539 aaPredicted RBP18.9■□□□□ 0.62
SYNCRIP-201ENST00000355238 TRIM41Q8WV44 630 aa18.9■□□□□ 0.62
SYNCRIP-201ENST00000355238 DAXXQ9UER7 740 aaPredicted RBP18.64■□□□□ 0.57
SYNCRIP-201ENST00000355238 UBTFP17480 764 aaKnown RBP18.62■□□□□ 0.57
SYNCRIP-201ENST00000355238 RANGAP1P46060 587 aaPredicted RBP18.59■□□□□ 0.57
SYNCRIP-201ENST00000355238 RTL5Q5HYW3 569 aaPredicted RBP18.48■□□□□ 0.55
SYNCRIP-201ENST00000355238 PPARGC1BQ86YN6 1023 aaKnown RBP18.48■□□□□ 0.55
SYNCRIP-201ENST00000355238 ATP1B4Q9UN42 357 aaPredicted RBP18.46■□□□□ 0.54
SYNCRIP-201ENST00000355238 DIEXFQ68CQ4 756 aaKnown RBP18.41■□□□□ 0.54
SYNCRIP-201ENST00000355238 GTF3C3Q9Y5Q9 886 aa18.3■□□□□ 0.52
SYNCRIP-201ENST00000355238 CHIC1Q5VXU3 224 aa18.26■□□□□ 0.51
SYNCRIP-201ENST00000355238 LOC105371045A0A1W2PR82 267 aa18.23■□□□□ 0.51
SYNCRIP-201ENST00000355238 ZNF316A6NFI3 1004 aaPredicted RBP18.22■□□□□ 0.51
SYNCRIP-201ENST00000355238 HNRNPUL2Q1KMD3 747 aaKnown RBP18.14■□□□□ 0.49
SYNCRIP-201ENST00000355238 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.14■□□□□ 0.49
SYNCRIP-201ENST00000355238 ACIN1Q9UKV3 1341 aaKnown RBP18.09■□□□□ 0.49
SYNCRIP-201ENST00000355238 ITGAEP38570 1179 aa18.06■□□□□ 0.48
SYNCRIP-201ENST00000355238 POLR3GLQ9BT43 218 aa18.06■□□□□ 0.48
SYNCRIP-201ENST00000355238 CDK11AQ9UQ88 783 aaPredicted RBP18.06■□□□□ 0.48
SYNCRIP-201ENST00000355238 CLSPNQ9HAW4 1339 aa18■□□□□ 0.47
SYNCRIP-201ENST00000355238 BCANQ96GW7 911 aa17.99■□□□□ 0.47
SYNCRIP-201ENST00000355238 CNGB1Q14028 1251 aaPredicted RBP17.85■□□□□ 0.45
SYNCRIP-201ENST00000355238 ANP32CO43423 234 aa17.84■□□□□ 0.45
SYNCRIP-201ENST00000355238 MYT1LQ9UL68 1186 aa17.84■□□□□ 0.45
SYNCRIP-201ENST00000355238 ANP32AP39687 249 aaKnown RBP17.79■□□□□ 0.44
SYNCRIP-201ENST00000355238 GLIPR1L2Q4G1C9 344 aa17.71■□□□□ 0.43
SYNCRIP-201ENST00000355238 EIF5BO60841 1220 aaKnown RBP17.69■□□□□ 0.42
SYNCRIP-201ENST00000355238 NEUROD1Q13562 356 aa17.63■□□□□ 0.41
SYNCRIP-201ENST00000355238 FAM50AQ14320 339 aaKnown RBP17.6■□□□□ 0.41
SYNCRIP-201ENST00000355238 FKBP8Q14318 412 aa17.54■□□□□ 0.4
SYNCRIP-201ENST00000355238 SCAF1Q9H7N4 1312 aaKnown RBP17.54■□□□□ 0.4
SYNCRIP-201ENST00000355238 SLC4A1APQ9BWU0 796 aaKnown RBP17.54■□□□□ 0.4
SYNCRIP-201ENST00000355238 TRIM52Q96A61 297 aa17.51■□□□□ 0.39
SYNCRIP-201ENST00000355238 ZBTB47Q9UFB7 747 aaPredicted RBP17.51■□□□□ 0.39
SYNCRIP-201ENST00000355238 NPM2Q86SE8 214 aaKnown RBP17.48■□□□□ 0.39
SYNCRIP-201ENST00000355238 ANP32BQ92688 251 aaKnown RBP17.48■□□□□ 0.39
SYNCRIP-201ENST00000355238 DCAF1Q9Y4B6 1507 aa17.44■□□□□ 0.38
SYNCRIP-201ENST00000355238 CANXP27824 592 aaKnown RBP17.42■□□□□ 0.38
SYNCRIP-201ENST00000355238 NBR1Q14596 966 aa17.34■□□□□ 0.37
SYNCRIP-201ENST00000355238 ANP32EQ9BTT0 268 aa17.33■□□□□ 0.36
SYNCRIP-201ENST00000355238 ZNF326Q5BKZ1 582 aaKnown RBP17.31■□□□□ 0.36
SYNCRIP-201ENST00000355238 UPF2Q9HAU5 1272 aaKnown RBP17.29■□□□□ 0.36
SYNCRIP-201ENST00000355238 HNRNPUQ00839 825 aaKnown RBP eCLIP17.28■□□□□ 0.365e-7■□□□□ 11.1
SYNCRIP-201ENST00000355238 CCDC136Q96JN2 1154 aa17.22■□□□□ 0.35
SYNCRIP-201ENST00000355238 HSP90AA1P07900 732 aaKnown RBP17.22■□□□□ 0.35
SYNCRIP-201ENST00000355238 NEFMP07197 916 aa17.17■□□□□ 0.34
SYNCRIP-201ENST00000355238 DDX10Q13206 875 aaKnown RBP17.16■□□□□ 0.34
SYNCRIP-201ENST00000355238 MIER1Q8N108 512 aa17.14■□□□□ 0.33
SYNCRIP-201ENST00000355238 TONSLQ96HA7 1378 aa17.14■□□□□ 0.33
SYNCRIP-201ENST00000355238 CSRNP3Q8WYN3 585 aa17.12■□□□□ 0.33
SYNCRIP-201ENST00000355238 FAM9BQ8IZU0 186 aa17.11■□□□□ 0.33
SYNCRIP-201ENST00000355238 DDRGK1Q96HY6 314 aa17.09■□□□□ 0.33
SYNCRIP-201ENST00000355238 BCL11AQ9H165 835 aa17.09■□□□□ 0.33
SYNCRIP-201ENST00000355238 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.07■□□□□ 0.32
SYNCRIP-201ENST00000355238 ARXQ96QS3 562 aa17.01■□□□□ 0.31
SYNCRIP-201ENST00000355238 ERICH6BQ5W0A0 696 aa17■□□□□ 0.31
SYNCRIP-201ENST00000355238 TNNT2P45379 298 aaPredicted RBP16.99■□□□□ 0.31
SYNCRIP-201ENST00000355238 TRIM44Q96DX7 344 aaPredicted RBP16.99■□□□□ 0.31
SYNCRIP-201ENST00000355238 PPM1GO15355 546 aaPredicted RBP16.98■□□□□ 0.31
SYNCRIP-201ENST00000355238 TMC1Q8TDI8 760 aa16.98■□□□□ 0.31
SYNCRIP-201ENST00000355238 BECN1Q14457 450 aa16.97■□□□□ 0.31
SYNCRIP-201ENST00000355238 MRS2Q9HD23 443 aa16.96■□□□□ 0.31
SYNCRIP-201ENST00000355238 IRX6P78412 446 aaPredicted RBP16.95■□□□□ 0.3
SYNCRIP-201ENST00000355238 SLC24A1O60721 1099 aa16.9■□□□□ 0.3
SYNCRIP-201ENST00000355238 SALL2Q9Y467 1007 aaPredicted RBP16.88■□□□□ 0.29
SYNCRIP-201ENST00000355238 CCDC180Q9P1Z9 1646 aa16.87■□□□□ 0.29
SYNCRIP-201ENST00000355238 NOP58Q9Y2X3 529 aaKnown RBP16.86■□□□□ 0.29
SYNCRIP-201ENST00000355238 GOLGA6L22H0YM25 854 aa16.85■□□□□ 0.29
SYNCRIP-201ENST00000355238 SUPT16HQ9Y5B9 1047 aaKnown RBP16.84■□□□□ 0.29
SYNCRIP-201ENST00000355238 WDR43Q15061 677 aaKnown RBP eCLIP16.83■□□□□ 0.28
SYNCRIP-201ENST00000355238 NAP1L5Q96NT1 182 aaPredicted RBP16.82■□□□□ 0.28
SYNCRIP-201ENST00000355238 P3H3Q8IVL6 736 aa16.82■□□□□ 0.28
SYNCRIP-201ENST00000355238 PPP4R2Q9NY27 417 aa16.8■□□□□ 0.28
SYNCRIP-201ENST00000355238 RTN4Q9NQC3 1192 aaKnown RBP16.8■□□□□ 0.28
SYNCRIP-201ENST00000355238 NCLP19338 710 aaKnown RBP16.77■□□□□ 0.28
SYNCRIP-201ENST00000355238 DEKP35659 375 aaKnown RBP16.76■□□□□ 0.27
SYNCRIP-201ENST00000355238 EIF4G2P78344 907 aaKnown RBP eCLIP16.75■□□□□ 0.27
SYNCRIP-201ENST00000355238 ZNF777Q9ULD5 760 aaPredicted RBP16.71■□□□□ 0.27
SYNCRIP-201ENST00000355238 MYH16Q9H6N6 1097 aa16.71■□□□□ 0.27
SYNCRIP-201ENST00000355238 PTMAP06454 111 aaKnown RBP16.71■□□□□ 0.27
SYNCRIP-201ENST00000355238 LAS1LQ9Y4W2 734 aaKnown RBP16.71■□□□□ 0.27
SYNCRIP-201ENST00000355238 DNTTIP2Q5QJE6 756 aaKnown RBP16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms