RNA–Protein interactions for RNA: ENST00000417448.1

VCP-202, Transcript of valosin containing protein, humanhuman

TSL 3

Gene VCP, Length 722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-202ENST00000417448 NISCHQ9Y2I1 1504 aa45.72■■■■■ 4.91
VCP-202ENST00000417448 ABCC9O60706 1549 aa42.08■■■■■ 4.33
VCP-202ENST00000417448 CCDC180Q9P1Z9 1646 aa41.38■■■■■ 4.21
VCP-202ENST00000417448 DNAJC5BQ9UF47 199 aa40.17■■■■■ 4.02
VCP-202ENST00000417448 RB1CC1Q8TDY2 1594 aa39.69■■■■□ 3.94
VCP-202ENST00000417448 NACADO15069 1562 aa39.25■■■■□ 3.87
VCP-202ENST00000417448 PABPN1Q86U42 306 aaKnown RBP eCLIP39.03■■■■□ 3.84
VCP-202ENST00000417448 UNC13AQ9UPW8 1703 aa38.96■■■■□ 3.83
VCP-202ENST00000417448 DCAF8L2P0C7V8 631 aa38.79■■■■□ 3.8
VCP-202ENST00000417448 BICRAQ9NZM4 1560 aa38.68■■■■□ 3.78
VCP-202ENST00000417448 MYO15BQ96JP2 1530 aa38.45■■■■□ 3.75
VCP-202ENST00000417448 CC2D2AQ9P2K1 1620 aa38.01■■■■□ 3.67
VCP-202ENST00000417448 CECR2Q9BXF3 1484 aa37.96■■■■□ 3.67
VCP-202ENST00000417448 SHROOM4Q9ULL8 1493 aa37.94■■■■□ 3.66
VCP-202ENST00000417448 ZCCHC6Q5VYS8 1495 aaKnown RBP37.76■■■■□ 3.63
VCP-202ENST00000417448 EIF4G1Q04637 1599 aaKnown RBP37.74■■■■□ 3.63
VCP-202ENST00000417448 DCAF1Q9Y4B6 1507 aa37.7■■■■□ 3.63
VCP-202ENST00000417448 SCRIBQ14160 1630 aa37.67■■■■□ 3.62
VCP-202ENST00000417448 DNAJC5Q9H3Z4 198 aa37.34■■■■□ 3.57
VCP-202ENST00000417448 CUX2O14529 1486 aa36.53■■■■□ 3.44
VCP-202ENST00000417448 ERCC6Q03468 1493 aa36.32■■■■□ 3.41
VCP-202ENST00000417448 NCAPD3P42695 1498 aa36.24■■■■□ 3.39
VCP-202ENST00000417448 ATAD2BQ9ULI0 1458 aa36.04■■■■□ 3.36
VCP-202ENST00000417448 NESP48681 1621 aa35.98■■■■□ 3.35
VCP-202ENST00000417448 HMGXB3Q12766 1538 aa35.93■■■■□ 3.34
VCP-202ENST00000417448 SMARCA2P51531 1590 aa35.87■■■■□ 3.33
VCP-202ENST00000417448 SMARCA4P51532 1647 aa35.86■■■■□ 3.33
VCP-202ENST00000417448 THOC2Q8NI27 1593 aaKnown RBP35.8■■■■□ 3.32
VCP-202ENST00000417448 BAZ1BQ9UIG0 1483 aaKnown RBP35.63■■■■□ 3.29
VCP-202ENST00000417448 LAMC3Q9Y6N6 1575 aa35.55■■■■□ 3.28
VCP-202ENST00000417448 KIF21AQ7Z4S6 1674 aa35.53■■■■□ 3.28
VCP-202ENST00000417448 PEG3Q9GZU2 1588 aa35.51■■■■□ 3.28
VCP-202ENST00000417448 BAZ1AQ9NRL2 1556 aaPredicted RBP35.51■■■■□ 3.28
VCP-202ENST00000417448 TRIM41Q8WV44 630 aa35.38■■■■□ 3.25
VCP-202ENST00000417448 PDS5BQ9NTI5 1447 aa35.3■■■■□ 3.24
VCP-202ENST00000417448 MROH2BQ7Z745 1585 aa35.25■■■■□ 3.23
VCP-202ENST00000417448 MRC2Q9UBG0 1479 aa35.1■■■■□ 3.21
VCP-202ENST00000417448 WDR62O43379 1518 aa35.09■■■■□ 3.21
VCP-202ENST00000417448 CADPSQ9ULU8 1353 aa35.07■■■■□ 3.2
VCP-202ENST00000417448 WIZO95785 1651 aa34.82■■■■□ 3.17
VCP-202ENST00000417448 CEP164Q9UPV0 1460 aa34.8■■■■□ 3.16
VCP-202ENST00000417448 FANCD2Q9BXW9 1451 aa34.71■■■■□ 3.15
VCP-202ENST00000417448 OSCARQ8IYS5 282 aa34.67■■■■□ 3.14
VCP-202ENST00000417448 CFTRP13569 1480 aa34.56■■■■□ 3.12
VCP-202ENST00000417448 URB2Q14146 1524 aaKnown RBP34.52■■■■□ 3.12
VCP-202ENST00000417448 RIMBP3CA6NJZ7 1639 aa34.44■■■■□ 3.1
VCP-202ENST00000417448 RIMBP3BA6NNM3 1639 aa34.44■■■■□ 3.1
VCP-202ENST00000417448 RIMBP3Q9UFD9 1639 aa34.44■■■■□ 3.1
VCP-202ENST00000417448 TOP2AP11388 1531 aaKnown RBP34.28■■■■□ 3.08
VCP-202ENST00000417448 ARHGEF11O15085 1522 aa34.24■■■■□ 3.07
VCP-202ENST00000417448 PRDM2Q13029 1718 aa34.24■■■■□ 3.07
VCP-202ENST00000417448 ZNF608Q9ULD9 1512 aaPredicted RBP34.22■■■■□ 3.07
VCP-202ENST00000417448 RSF1Q96T23 1441 aaPredicted RBP34.21■■■■□ 3.07
VCP-202ENST00000417448 IFT140Q96RY7 1462 aa34.12■■■■□ 3.05
VCP-202ENST00000417448 EIF4G3O43432 1585 aaKnown RBP34.01■■■■□ 3.03
VCP-202ENST00000417448 TOPBP1Q92547 1522 aa33.99■■■■□ 3.03
VCP-202ENST00000417448 CYB5RLQ6IPT4 315 aa33.94■■■■□ 3.02
VCP-202ENST00000417448 CHD1O14646 1710 aa33.93■■■■□ 3.02
VCP-202ENST00000417448 CCDC88BA6NC98 1476 aa33.88■■■■□ 3.01
VCP-202ENST00000417448 ARAP1Q96P48 1450 aa33.86■■■■□ 3.01
VCP-202ENST00000417448 TARBP1Q13395 1621 aaKnown RBP33.8■■■■□ 3
VCP-202ENST00000417448 DNMBPQ6XZF7 1577 aa33.8■■■■□ 3
VCP-202ENST00000417448 AQRO60306 1485 aaKnown RBP eCLIP33.78■■■■□ 31e-6■■□□□ 12.7
VCP-202ENST00000417448 ABCC8Q09428 1581 aa33.77■■■■□ 3
VCP-202ENST00000417448 TRHP20396 242 aaPredicted RBP33.77■■■■□ 3
VCP-202ENST00000417448 FBLN2P98095 1184 aa33.61■■■□□ 2.97
VCP-202ENST00000417448 POLA1P09884 1462 aaPredicted RBP33.61■■■□□ 2.97
VCP-202ENST00000417448 RAD54L2Q9Y4B4 1467 aa33.5■■■□□ 2.95
VCP-202ENST00000417448 CLASP1Q7Z460 1538 aa33.48■■■□□ 2.95
VCP-202ENST00000417448 TDRD9Q8NDG6 1382 aaKnown RBP33.44■■■□□ 2.94
VCP-202ENST00000417448 SNAPC4Q5SXM2 1469 aa33.42■■■□□ 2.94
VCP-202ENST00000417448 SOGA1O94964 1423 aa33.37■■■□□ 2.93
VCP-202ENST00000417448 SYNJ1O43426 1573 aa33.33■■■□□ 2.93
VCP-202ENST00000417448 WDR97A6NE52 1622 aa33.31■■■□□ 2.92
VCP-202ENST00000417448 FGD5Q6ZNL6 1462 aa33.29■■■□□ 2.92
VCP-202ENST00000417448 AEBP2Q6ZN18 517 aaPredicted RBP33.28■■■□□ 2.92
VCP-202ENST00000417448 MAGI1Q96QZ7 1491 aaPredicted RBP33.26■■■□□ 2.92
VCP-202ENST00000417448 CHMP7Q8WUX9 453 aaPredicted RBP33.23■■■□□ 2.91
VCP-202ENST00000417448 SYNJ2O15056 1496 aa33.18■■■□□ 2.9
VCP-202ENST00000417448 GRIN2BQ13224 1484 aa33.18■■■□□ 2.9
VCP-202ENST00000417448 CUX1P39880 1505 aa33.17■■■□□ 2.9
VCP-202ENST00000417448 GAPVD1Q14C86 1478 aa33.12■■■□□ 2.89
VCP-202ENST00000417448 PBRM1Q86U86 1689 aa33.1■■■□□ 2.89
VCP-202ENST00000417448 ERCC6L2Q5T890 1561 aa32.96■■■□□ 2.87
VCP-202ENST00000417448 ABCA5Q8WWZ7 1642 aa32.92■■■□□ 2.86
VCP-202ENST00000417448 ABCA10Q8WWZ4 1543 aa32.84■■■□□ 2.85
VCP-202ENST00000417448 GRIN2AQ12879 1464 aa32.79■■■□□ 2.84
VCP-202ENST00000417448 CEP170Q5SW79 1584 aa32.78■■■□□ 2.84
VCP-202ENST00000417448 KIF13AQ9H1H9 1805 aa32.73■■■□□ 2.83
VCP-202ENST00000417448 ADAMTS12P58397 1594 aa32.72■■■□□ 2.83
VCP-202ENST00000417448 NUP160Q12769 1436 aa32.71■■■□□ 2.83
VCP-202ENST00000417448 SHROOM2Q13796 1616 aa32.7■■■□□ 2.83
VCP-202ENST00000417448 WRNQ14191 1432 aaPredicted RBP eCLIP32.51■■■□□ 2.8
VCP-202ENST00000417448 FHAD1B1AJZ9 1412 aa32.51■■■□□ 2.79
VCP-202ENST00000417448 BIVM-ERCC5R4GMW8 1640 aa32.45■■■□□ 2.79
VCP-202ENST00000417448 PRG4Q92954 1404 aaPredicted RBP32.43■■■□□ 2.78
VCP-202ENST00000417448 TOP2BQ02880 1626 aa32.41■■■□□ 2.78
VCP-202ENST00000417448 ERICH3Q5RHP9 1530 aa32.41■■■□□ 2.78
VCP-202ENST00000417448 ABCC10Q5T3U5 1492 aa32.35■■■□□ 2.77
VCP-202ENST00000417448 DIP2BQ9P265 1576 aa32.31■■■□□ 2.76
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms