Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 TMUB2-207ENST00000587630 1191 ntTSL 315.47■□□□□ 0.078e-13■■■□□ 18.1
DDX55Q8NHQ9 TMUB2-214ENST00000590235 1569 ntTSL 1 (best) BASIC15.18■□□□□ 0.028e-13■■■□□ 18.1
DDX55Q8NHQ9 TMUB2-215ENST00000592825 2151 ntTSL 3 BASIC14.12□□□□□ -0.158e-13■■■□□ 18.1
DDX55Q8NHQ9 TMUB2-201ENST00000319511 2418 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.178e-13■■■□□ 18.1
DDX55Q8NHQ9 MAN2C1-230ENST00000566099 1316 ntTSL 526.79■■□□□ 1.886e-9■■■□□ 18.1
DDX55Q8NHQ9 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC24.86■■□□□ 1.576e-9■■■□□ 18.1
DDX55Q8NHQ9 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC14.32□□□□□ -0.126e-9■■■□□ 18.1
DDX55Q8NHQ9 MAN2C1-242ENST00000569482 3177 ntTSL 1 (best) BASIC13.76□□□□□ -0.216e-9■■■□□ 18.1
DDX55Q8NHQ9 MAN2C1-224ENST00000565683 3300 ntTSL 1 (best) BASIC13.15□□□□□ -0.316e-9■■■□□ 18.1
DDX55Q8NHQ9 MAN2C1-201ENST00000267978 3284 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.326e-9■■■□□ 18.1
DDX55Q8NHQ9 CMIP-202ENST00000537098 4357 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.054e-6■■■□□ 18.1
DDX55Q8NHQ9 CMIP-211ENST00000621537 4000 ntTSL 5 BASIC13.17□□□□□ -0.34e-6■■■□□ 18.1
DDX55Q8NHQ9 ATF6B-216ENST00000494022 320 ntTSL 215.49■□□□□ 0.071e-7■■■□□ 18.1
DDX55Q8NHQ9 ATF6B-209ENST00000375201 2624 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 01e-7■■■□□ 18.1
DDX55Q8NHQ9 ATF6B-210ENST00000375203 2620 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.251e-7■■■□□ 18.1
DDX55Q8NHQ9 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.022e-9■■■□□ 18.1
DDX55Q8NHQ9 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.862e-19■■■□□ 18.1
DDX55Q8NHQ9 PSMD11-203ENST00000469475 473 ntTSL 217.71■□□□□ 0.432e-9■■■□□ 18.1
DDX55Q8NHQ9 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.372e-9■■■□□ 18.1
DDX55Q8NHQ9 NOP56-216ENST00000492135 1143 ntTSL 1 (best)17.37■□□□□ 0.372e-19■■■□□ 18.1
DDX55Q8NHQ9 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC17.18■□□□□ 0.342e-6■■■□□ 18.1
DDX55Q8NHQ9 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.342e-9■■■□□ 18.1
DDX55Q8NHQ9 NOP56-220ENST00000616692 2662 ntTSL 1 (best)16.54■□□□□ 0.242e-19■■■□□ 18.1
DDX55Q8NHQ9 NOP56-219ENST00000612233 2980 nt14.78□□□□□ -0.042e-19■■■□□ 18.1
DDX55Q8NHQ9 NOP56-206ENST00000466447 1094 ntTSL 214.7□□□□□ -0.062e-19■■■□□ 18.1
DDX55Q8NHQ9 PSMD11-211ENST00000585265 670 ntTSL 214.29□□□□□ -0.122e-9■■■□□ 18.1
DDX55Q8NHQ9 AP1M1-205ENST00000586543 642 ntTSL 514.19□□□□□ -0.142e-9■■■□□ 18.1
DDX55Q8NHQ9 CDK12-201ENST00000430627 5918 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.162e-9■■■□□ 18.1
DDX55Q8NHQ9 AP1M1-203ENST00000444449 2311 ntTSL 1 (best) BASIC13.96□□□□□ -0.172e-9■■■□□ 18.1
DDX55Q8NHQ9 PSMD11-201ENST00000261712 4098 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.232e-9■■■□□ 18.1
DDX55Q8NHQ9 HNRNPF-207ENST00000544000 2676 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.32e-9■■■□□ 18.1
DDX55Q8NHQ9 HNRNPF-202ENST00000356053 2670 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.32e-9■■■□□ 18.1
DDX55Q8NHQ9 PSMD11-205ENST00000493026 2387 ntTSL 213.2□□□□□ -0.32e-9■■■□□ 18.1
DDX55Q8NHQ9 NOP56-202ENST00000415272 1628 ntTSL 512.08□□□□□ -0.482e-19■■■□□ 18.1
DDX55Q8NHQ9 HNRNPF-203ENST00000357065 2617 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.522e-9■■■□□ 18.1
DDX55Q8NHQ9 CDK12-208ENST00000584336 1963 nt11.79□□□□□ -0.522e-9■■■□□ 18.1
DDX55Q8NHQ9 NOP56-205ENST00000462630 859 ntTSL 211.74□□□□□ -0.532e-19■■■□□ 18.1
DDX55Q8NHQ9 AC124798.1-201ENST00000568280 2883 ntBASIC11.49□□□□□ -0.574e-8■■■□□ 18.1
DDX55Q8NHQ9 NOP56-207ENST00000467196 1320 ntTSL 510.84□□□□□ -0.672e-19■■■□□ 18.1
DDX55Q8NHQ9 CDK12-205ENST00000559663 871 ntTSL 510.34□□□□□ -0.752e-9■■■□□ 18.1
DDX55Q8NHQ9 NOP56-208ENST00000467857 735 ntTSL 29.93□□□□□ -0.822e-19■■■□□ 18.1
DDX55Q8NHQ9 AP1M1-201ENST00000291439 13193 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -12e-9■■■□□ 18.1
DDX55Q8NHQ9 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC7.72□□□□□ -1.172e-9■■■□□ 18.1
DDX55Q8NHQ9 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC22.59■■□□□ 1.214e-10■■■□□ 18.1
DDX55Q8NHQ9 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.054e-10■■■□□ 18.1
DDX55Q8NHQ9 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.914e-10■■■□□ 18.1
DDX55Q8NHQ9 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.424e-10■■■□□ 18.1
DDX55Q8NHQ9 PUF60-204ENST00000456095 1736 ntTSL 5 BASIC15.66■□□□□ 0.14e-10■■■□□ 18.1
DDX55Q8NHQ9 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC26.28■■□□□ 1.84e-7■■■□□ 18
DDX55Q8NHQ9 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC26.25■■□□□ 1.794e-7■■■□□ 18
DDX55Q8NHQ9 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC22.57■■□□□ 1.24e-7■■■□□ 18
DDX55Q8NHQ9 XBP1-204ENST00000405219 1690 ntTSL 2 BASIC14.63□□□□□ -0.074e-7■■■□□ 18
DDX55Q8NHQ9 XBP1-206ENST00000484256 2173 ntTSL 213.64□□□□□ -0.234e-7■■■□□ 18
DDX55Q8NHQ9 SMG9-210ENST00000600097 538 ntTSL 221.61■■□□□ 1.051e-9■■■□□ 18
DDX55Q8NHQ9 PRPF6-201ENST00000266079 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.131e-8■■■□□ 18
DDX55Q8NHQ9 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC26.13■■□□□ 1.772e-8■■■□□ 18
DDX55Q8NHQ9 RABL6-210ENST00000484471 2746 ntTSL 520.56■□□□□ 0.882e-8■■■□□ 18
DDX55Q8NHQ9 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.572e-8■■■□□ 18
DDX55Q8NHQ9 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.52e-8■■■□□ 18
DDX55Q8NHQ9 RABL6-208ENST00000464941 3361 ntTSL 217.58■□□□□ 0.412e-8■■■□□ 18
DDX55Q8NHQ9 ARHGDIA-216ENST00000584397 622 ntTSL 230.07■■■□□ 2.43e-9■■■□□ 18
DDX55Q8NHQ9 ARHGDIA-213ENST00000583499 560 ntTSL 229.19■■■□□ 2.263e-9■■■□□ 18
DDX55Q8NHQ9 ARHGDIA-211ENST00000582984 823 ntTSL 326.94■■□□□ 1.93e-9■■■□□ 18
DDX55Q8NHQ9 ARHGDIA-212ENST00000583111 574 ntTSL 223.45■■□□□ 1.343e-9■■■□□ 18
DDX55Q8NHQ9 ARHGDIA-206ENST00000580033 547 ntTSL 420.93■□□□□ 0.943e-9■■■□□ 18
DDX55Q8NHQ9 ARHGDIA-204ENST00000578351 421 ntTSL 414.58□□□□□ -0.083e-9■■■□□ 18
DDX55Q8NHQ9 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC34.63■■■■□ 3.131e-27■■■□□ 18
DDX55Q8NHQ9 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.121e-27■■■□□ 18
DDX55Q8NHQ9 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC22.02■■□□□ 1.121e-27■■■□□ 18
DDX55Q8NHQ9 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC16■□□□□ 0.151e-27■■■□□ 18
DDX55Q8NHQ9 CDK2AP1-204ENST00000538446 1161 ntTSL 5 BASIC15.14■□□□□ 0.011e-27■■■□□ 18
DDX55Q8NHQ9 AC068768.1-202ENST00000541002 1110 ntTSL 5 BASIC12.47□□□□□ -0.411e-27■■■□□ 18
DDX55Q8NHQ9 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC7.16□□□□□ -1.261e-27■■■□□ 18
DDX55Q8NHQ9 PKD1-203ENST00000423118 14135 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.587e-7■■■□□ 18
DDX55Q8NHQ9 PKD1-201ENST00000262304 14138 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.597e-7■■■□□ 18
DDX55Q8NHQ9 PTMA-208ENST00000448874 1108 ntTSL 220.75■□□□□ 0.915e-13■■■□□ 18
DDX55Q8NHQ9 PTMA-212ENST00000481928 1635 ntTSL 319.69■□□□□ 0.745e-13■■■□□ 18
DDX55Q8NHQ9 PTMA-201ENST00000341369 1212 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.375e-13■■■□□ 18
DDX55Q8NHQ9 PTMA-202ENST00000409115 1221 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.485e-13■■■□□ 18
DDX55Q8NHQ9 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC16.93■□□□□ 0.35e-10■■■□□ 18
DDX55Q8NHQ9 PPT1-215ENST00000641471 2368 ntBASIC16.74■□□□□ 0.275e-10■■■□□ 18
DDX55Q8NHQ9 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.095e-10■■■□□ 18
DDX55Q8NHQ9 PPT1-212ENST00000641236 2481 nt15.45■□□□□ 0.065e-10■■■□□ 18
DDX55Q8NHQ9 PPT1-213ENST00000641319 2388 ntBASIC14.87□□□□□ -0.035e-10■■■□□ 18
DDX55Q8NHQ9 PPT1-204ENST00000439754 2195 ntTSL 3 BASIC14.36□□□□□ -0.115e-10■■■□□ 18
DDX55Q8NHQ9 PPT1-217ENST00000641691 2253 nt14.15□□□□□ -0.145e-10■■■□□ 18
DDX55Q8NHQ9 PPT1-210ENST00000530704 2340 ntTSL 1 (best)13.92□□□□□ -0.185e-10■■■□□ 18
DDX55Q8NHQ9 PPT1-219ENST00000642050 4010 ntAPPRIS P2 BASIC12.44□□□□□ -0.425e-10■■■□□ 18
DDX55Q8NHQ9 PPT1-211ENST00000641083 2353 nt12.34□□□□□ -0.435e-10■■■□□ 18
DDX55Q8NHQ9 PPT1-209ENST00000530076 1872 ntTSL 2 BASIC11.52□□□□□ -0.575e-10■■■□□ 18
DDX55Q8NHQ9 MLEC-202ENST00000412616 841 ntTSL 3 BASIC32.77■■■□□ 2.843e-7■■■□□ 17.9
DDX55Q8NHQ9 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC30.59■■■□□ 2.493e-7■■■□□ 17.9
DDX55Q8NHQ9 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC28.16■■■□□ 2.13e-7■■■□□ 17.9
DDX55Q8NHQ9 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC27.44■■□□□ 1.983e-7■■■□□ 17.9
DDX55Q8NHQ9 AC093323.1-203ENST00000444232 1605 ntTSL 1 (best)27.04■■□□□ 1.925e-11■■■□□ 17.9
DDX55Q8NHQ9 PHF1-208ENST00000486845 1099 ntTSL 525.27■■□□□ 1.641e-7■■■□□ 17.9
DDX55Q8NHQ9 AC093323.1-202ENST00000635031 2045 ntBASIC24.6■■□□□ 1.535e-11■■■□□ 17.9
DDX55Q8NHQ9 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC24.16■■□□□ 1.463e-7■■■□□ 17.9
DDX55Q8NHQ9 PNCK-221ENST00000466074 1564 ntTSL 224■■□□□ 1.433e-7■■■□□ 17.9
DDX55Q8NHQ9 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.313e-7■■■□□ 17.9
Retrieved 100 of 15,504 protein–RNA pairs in 138 ms