Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 RPL23A-202ENST00000394935 580 ntTSL 312.82□□□□□ -0.366e-11■□□□□ 8.2
YBX3P16989 RPL23A-203ENST00000394938 688 ntTSL 2 BASIC10.24□□□□□ -0.776e-11■□□□□ 8.2
YBX3P16989 RPL23A-201ENST00000355731 587 ntTSL 59.13□□□□□ -0.956e-11■□□□□ 8.2
YBX3P16989 RPL23A-207ENST00000578181 593 ntTSL 24.8□□□□□ -1.646e-11■□□□□ 8.2
YBX3P16989 LDHB-210ENST00000544151 544 ntTSL 220.79■□□□□ 0.927e-24■□□□□ 8.2
YBX3P16989 LDHB-204ENST00000450584 732 ntTSL 313.65□□□□□ -0.227e-24■□□□□ 8.2
YBX3P16989 LDHB-208ENST00000539782 487 ntTSL 310.02□□□□□ -0.817e-24■□□□□ 8.2
YBX3P16989 PRMT5-218ENST00000555454 771 ntTSL 510.98□□□□□ -0.659e-9■□□□□ 8.2
YBX3P16989 PRMT5-206ENST00000454731 617 ntTSL 38.49□□□□□ -1.059e-9■□□□□ 8.2
YBX3P16989 EIF3D-209ENST00000462641 887 ntTSL 215.33■□□□□ 0.043e-9■□□□□ 8.2
YBX3P16989 EIF3E-207ENST00000519413 419 ntTSL 36.95□□□□□ -1.36e-21■□□□□ 8.2
YBX3P16989 GTF2A1-201ENST00000298173 1677 ntTSL 229.22■■■□□ 2.272e-6■□□□□ 8.2
YBX3P16989 GTF2A1-204ENST00000556268 864 ntTSL 512.48□□□□□ -0.412e-6■□□□□ 8.2
YBX3P16989 GTF2A1-202ENST00000434192 1199 ntTSL 1 (best) BASIC8.48□□□□□ -1.052e-6■□□□□ 8.2
YBX3P16989 GTF2A1-203ENST00000553612 6306 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.052e-6■□□□□ 8.2
YBX3P16989 PPP1CC-209ENST00000551690 603 ntTSL 330.35■■■□□ 2.453e-18■□□□□ 8.2
YBX3P16989 SKP1-213ENST00000524288 732 ntTSL 1 (best)8.8□□□□□ -11e-15■□□□□ 8.2
YBX3P16989 ALAS2-207ENST00000493869 658 ntTSL 217.16■□□□□ 0.345e-13■□□□□ 8.2
YBX3P16989 ALAS2-204ENST00000455688 664 ntTSL 28.12□□□□□ -1.115e-13■□□□□ 8.2
YBX3P16989 RAB10-204ENST00000495146 1292 ntTSL 532.02■■■□□ 2.722e-10■□□□□ 8.2
YBX3P16989 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC31.09■■■□□ 2.572e-10■□□□□ 8.2
YBX3P16989 RAB10-201ENST00000264710 3535 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.282e-10■□□□□ 8.2
YBX3P16989 RAB10-202ENST00000462003 584 ntTSL 49.6□□□□□ -0.872e-10■□□□□ 8.2
YBX3P16989 RAB10-203ENST00000473035 571 ntTSL 49.56□□□□□ -0.882e-10■□□□□ 8.2
YBX3P16989 MRTO4-203ENST00000493700 578 ntTSL 227.02■■□□□ 1.922e-10■□□□□ 8.2
YBX3P16989 PRKCB-204ENST00000466124 536 ntTSL 38.02□□□□□ -1.132e-10■□□□□ 8.2
YBX3P16989 TMED10-207ENST00000622441 612 nt28.88■■■□□ 2.213e-9■□□□□ 8.2
YBX3P16989 TMED10-203ENST00000555085 553 ntTSL 216.95■□□□□ 0.33e-9■□□□□ 8.2
YBX3P16989 LDHB-202ENST00000396075 744 ntTSL 311.32□□□□□ -0.62e-23■□□□□ 8.2
YBX3P16989 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC27.77■■■□□ 2.045e-9■□□□□ 8.2
YBX3P16989 UCHL5-203ENST00000367450 1355 ntTSL 525.84■■□□□ 1.735e-9■□□□□ 8.2
YBX3P16989 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC24.96■■□□□ 1.595e-9■□□□□ 8.2
YBX3P16989 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.265e-9■□□□□ 8.2
YBX3P16989 UCHL5-212ENST00000449480 784 ntTSL 37.11□□□□□ -1.275e-9■□□□□ 8.2
YBX3P16989 UCHL5-209ENST00000420791 1329 ntTSL 55.59□□□□□ -1.515e-9■□□□□ 8.2
YBX3P16989 PTMS-203ENST00000538057 976 ntTSL 228.28■■■□□ 2.123e-27■□□□□ 8.2
YBX3P16989 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.123e-27■□□□□ 8.2
YBX3P16989 PTMS-205ENST00000540828 644 ntTSL 1 (best)27.99■■■□□ 2.073e-27■□□□□ 8.2
YBX3P16989 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.63e-27■□□□□ 8.2
YBX3P16989 PAM16-208ENST00000573553 722 ntTSL 2 BASIC23.05■■□□□ 1.281e-7■□□□□ 8.2
YBX3P16989 PAM16-210ENST00000575636 732 ntTSL 323.01■■□□□ 1.271e-7■□□□□ 8.2
YBX3P16989 SEC13-206ENST00000397102 582 ntTSL 321.28■■□□□ 11e-7■□□□□ 8.2
YBX3P16989 PAM16-204ENST00000571941 674 ntTSL 3 BASIC20.42■□□□□ 0.861e-7■□□□□ 8.2
YBX3P16989 PAM16-206ENST00000573236 704 ntTSL 1 (best)20.42■□□□□ 0.861e-7■□□□□ 8.2
YBX3P16989 PTMS-204ENST00000540667 820 ntTSL 220.11■□□□□ 0.813e-27■□□□□ 8.2
YBX3P16989 PAM16-215ENST00000577031 548 ntTSL 4 BASIC19.64■□□□□ 0.731e-7■□□□□ 8.2
YBX3P16989 SEC13-205ENST00000397101 592 ntTSL 219.12■□□□□ 0.651e-7■□□□□ 8.2
YBX3P16989 SEC13-211ENST00000431352 832 ntTSL 519.11■□□□□ 0.651e-7■□□□□ 8.2
YBX3P16989 PAM16-211ENST00000575848 518 ntTSL 3 BASIC18.78■□□□□ 0.61e-7■□□□□ 8.2
YBX3P16989 CNOT10-218ENST00000494439 551 ntTSL 518.56■□□□□ 0.561e-7■□□□□ 8.2
YBX3P16989 CNOT10-219ENST00000556853 551 ntTSL 418.56■□□□□ 0.561e-7■□□□□ 8.2
YBX3P16989 SEC13-204ENST00000397099 555 ntTSL 418.52■□□□□ 0.561e-7■□□□□ 8.2
YBX3P16989 PAM16-207ENST00000573450 579 ntTSL 216.13■□□□□ 0.171e-7■□□□□ 8.2
YBX3P16989 CNOT10-217ENST00000485136 608 ntTSL 28.74□□□□□ -1.011e-7■□□□□ 8.2
YBX3P16989 CNOT10-210ENST00000466103 303 ntTSL 37.77□□□□□ -1.171e-7■□□□□ 8.2
YBX3P16989 CNOT10-208ENST00000463006 692 ntTSL 36.65□□□□□ -1.341e-7■□□□□ 8.2
YBX3P16989 RBM38-205ENST00000440234 686 ntTSL 2 BASIC29.81■■■□□ 2.361e-7■□□□□ 8.2
YBX3P16989 RBM38-201ENST00000342690 852 ntTSL 327.74■■■□□ 2.031e-7■□□□□ 8.2
YBX3P16989 MPG-205ENST00000475280 510 ntTSL 225.68■■□□□ 1.71e-7■□□□□ 8.2
YBX3P16989 CDC123-206ENST00000455773 959 ntTSL 524.75■■□□□ 1.551e-7■□□□□ 8.2
YBX3P16989 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.511e-7■□□□□ 8.2
YBX3P16989 CDC123-203ENST00000429258 646 ntTSL 323.87■■□□□ 1.411e-7■□□□□ 8.2
YBX3P16989 RBM38-202ENST00000344785 2193 ntTSL 520.14■□□□□ 0.811e-7■□□□□ 8.2
YBX3P16989 USP22-205ENST00000478443 1071 ntTSL 1 (best)18.82■□□□□ 0.61e-7■□□□□ 8.2
YBX3P16989 RBM38-204ENST00000371219 760 ntTSL 2 BASIC18.49■□□□□ 0.551e-7■□□□□ 8.2
YBX3P16989 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.071e-7■□□□□ 8.2
YBX3P16989 ABCF1-203ENST00000441867 1074 ntTSL 513.26□□□□□ -0.291e-7■□□□□ 8.2
YBX3P16989 RAB11FIP1-202ENST00000330843 7811 ntTSL 1 (best) BASIC12.76□□□□□ -0.371e-7■□□□□ 8.2
YBX3P16989 CDC123-205ENST00000442050 564 ntTSL 57.2□□□□□ -1.261e-7■□□□□ 8.2
YBX3P16989 CDC123-202ENST00000378900 933 ntTSL 5 BASIC6.57□□□□□ -1.361e-7■□□□□ 8.2
YBX3P16989 RPL10-208ENST00000449494 622 ntTSL 519.05■□□□□ 0.644e-12■□□□□ 8.2
YBX3P16989 RPL10-205ENST00000427682 457 ntTSL 514.22□□□□□ -0.134e-12■□□□□ 8.2
YBX3P16989 RPL10-206ENST00000428169 292 ntTSL 512.94□□□□□ -0.344e-12■□□□□ 8.2
YBX3P16989 MCM4-214ENST00000523853 354 ntTSL 210.67□□□□□ -0.76e-13■□□□□ 8.2
YBX3P16989 ISOC2-207ENST00000590921 2283 ntTSL 219.29■□□□□ 0.682e-10■□□□□ 8.2
YBX3P16989 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC16.08■□□□□ 0.163e-9■□□□□ 8.2
YBX3P16989 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC15.82■□□□□ 0.123e-9■□□□□ 8.2
YBX3P16989 LDLR-203ENST00000535915 2768 ntTSL 2 BASIC13.51□□□□□ -0.253e-9■□□□□ 8.2
YBX3P16989 LDLR-207ENST00000558013 3144 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.313e-9■□□□□ 8.2
YBX3P16989 LDLR-205ENST00000557933 2941 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.383e-9■□□□□ 8.2
YBX3P16989 LDLR-210ENST00000559340 605 ntTSL 511.45□□□□□ -0.583e-9■□□□□ 8.2
YBX3P16989 MAN2A2-212ENST00000559341 623 ntTSL 219.26■□□□□ 0.671e-11■□□□□ 8.2
YBX3P16989 MAN2A2-203ENST00000557990 956 ntTSL 517.23■□□□□ 0.351e-11■□□□□ 8.2
YBX3P16989 MAN2A2-226ENST00000560926 569 ntTSL 412.04□□□□□ -0.481e-11■□□□□ 8.2
YBX3P16989 MAN2A2-219ENST00000560147 492 ntTSL 411.8□□□□□ -0.521e-11■□□□□ 8.2
YBX3P16989 MAN2A2-225ENST00000560880 718 ntTSL 210.08□□□□□ -0.81e-11■□□□□ 8.2
YBX3P16989 MAN2A2-208ENST00000558538 576 ntTSL 410.01□□□□□ -0.811e-11■□□□□ 8.2
YBX3P16989 EIF3D-211ENST00000478547 452 ntTSL 39.76□□□□□ -0.851e-11■□□□□ 8.2
YBX3P16989 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC25.42■■□□□ 1.669e-8■□□□□ 8.2
YBX3P16989 DBNDD2-209ENST00000443296 1233 ntTSL 224.49■■□□□ 1.519e-8■□□□□ 8.2
YBX3P16989 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC24.45■■□□□ 1.519e-8■□□□□ 8.2
YBX3P16989 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.59e-8■□□□□ 8.2
YBX3P16989 SYS1-DBNDD2-201ENST00000419593 1313 ntAPPRIS ALT2 TSL 222.9■■□□□ 1.269e-8■□□□□ 8.2
YBX3P16989 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.089e-8■□□□□ 8.2
YBX3P16989 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC21.36■■□□□ 1.019e-8■□□□□ 8.2
YBX3P16989 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.89e-8■□□□□ 8.2
YBX3P16989 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.679e-8■□□□□ 8.2
YBX3P16989 DBNDD2-207ENST00000372722 1202 ntTSL 3 BASIC17.79■□□□□ 0.449e-8■□□□□ 8.2
YBX3P16989 NOB1-206ENST00000569871 845 ntTSL 521.69■■□□□ 1.067e-7■□□□□ 8.2
YBX3P16989 NOB1-205ENST00000564620 812 ntTSL 220.22■□□□□ 0.837e-7■□□□□ 8.2
Retrieved 100 of 29,075 protein–RNA pairs in 613.6 ms