RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 NISCHQ9Y2I1 1504 aa25.49■■□□□ 1.67
LDLR-205ENST00000557933 CCDC180Q9P1Z9 1646 aa22.53■■□□□ 1.2
LDLR-205ENST00000557933 SHROOM4Q9ULL8 1493 aa21.7■■□□□ 1.06
LDLR-205ENST00000557933 ZCCHC6Q5VYS8 1495 aaKnown RBP21.44■■□□□ 1.02
LDLR-205ENST00000557933 SUPT5HO00267 1087 aaKnown RBP21.44■■□□□ 1.02
LDLR-205ENST00000557933 DCAF1Q9Y4B6 1507 aa21.33■■□□□ 1
LDLR-205ENST00000557933 MYO15BQ96JP2 1530 aa21.17■□□□□ 0.98
LDLR-205ENST00000557933 NACADO15069 1562 aa20.9■□□□□ 0.94
LDLR-205ENST00000557933 ABCC9O60706 1549 aa20.88■□□□□ 0.93
LDLR-205ENST00000557933 DCAF8L2P0C7V8 631 aa20.88■□□□□ 0.93
LDLR-205ENST00000557933 PCGF6Q9BYE7 350 aa20.74■□□□□ 0.91
LDLR-205ENST00000557933 RB1CC1Q8TDY2 1594 aa20.69■□□□□ 0.9
LDLR-205ENST00000557933 PPARGC1BQ86YN6 1023 aaKnown RBP20.69■□□□□ 0.9
LDLR-205ENST00000557933 HRCP23327 699 aa20.61■□□□□ 0.89
LDLR-205ENST00000557933 CHIC1Q5VXU3 224 aa20.61■□□□□ 0.89
LDLR-205ENST00000557933 LOC105371045A0A1W2PR82 267 aa20.41■□□□□ 0.86
LDLR-205ENST00000557933 SCRIBQ14160 1630 aa20.31■□□□□ 0.84
LDLR-205ENST00000557933 UNC13AQ9UPW8 1703 aa20.28■□□□□ 0.84
LDLR-205ENST00000557933 EHMT2Q96KQ7 1210 aa20.18■□□□□ 0.82
LDLR-205ENST00000557933 BICRAQ9NZM4 1560 aa20.04■□□□□ 0.8
LDLR-205ENST00000557933 FAM9AQ8IZU1 332 aaPredicted RBP19.96■□□□□ 0.79
LDLR-205ENST00000557933 TRIM26Q12899 539 aaPredicted RBP19.79■□□□□ 0.76
LDLR-205ENST00000557933 BAZ1AQ9NRL2 1556 aaPredicted RBP19.73■□□□□ 0.75
LDLR-205ENST00000557933 SMARCA4P51532 1647 aa19.64■□□□□ 0.73
LDLR-205ENST00000557933 RSF1Q96T23 1441 aaPredicted RBP19.62■□□□□ 0.73
LDLR-205ENST00000557933 TRIM41Q8WV44 630 aa19.62■□□□□ 0.73
LDLR-205ENST00000557933 CECR2Q9BXF3 1484 aa19.61■□□□□ 0.73
LDLR-205ENST00000557933 PEG3Q9GZU2 1588 aa19.58■□□□□ 0.73
LDLR-205ENST00000557933 MROH2BQ7Z745 1585 aa19.57■□□□□ 0.72
LDLR-205ENST00000557933 TTBK1Q5TCY1 1321 aaPredicted RBP19.54■□□□□ 0.72
LDLR-205ENST00000557933 PABPN1Q86U42 306 aaKnown RBP eCLIP19.49■□□□□ 0.71
LDLR-205ENST00000557933 SCAF1Q9H7N4 1312 aaKnown RBP19.47■□□□□ 0.71
LDLR-205ENST00000557933 WIZO95785 1651 aa19.41■□□□□ 0.7
LDLR-205ENST00000557933 EIF4G1Q04637 1599 aaKnown RBP19.4■□□□□ 0.7
LDLR-205ENST00000557933 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.38■□□□□ 0.69
LDLR-205ENST00000557933 SMARCA2P51531 1590 aa19.38■□□□□ 0.69
LDLR-205ENST00000557933 TOP2AP11388 1531 aaKnown RBP19.36■□□□□ 0.69
LDLR-205ENST00000557933 HMGXB3Q12766 1538 aa19.28■□□□□ 0.68
LDLR-205ENST00000557933 ATAD2BQ9ULI0 1458 aa19.27■□□□□ 0.68
LDLR-205ENST00000557933 ZEB1P37275 1124 aaPredicted RBP19.27■□□□□ 0.68
LDLR-205ENST00000557933 NCAPD3P42695 1498 aa19.22■□□□□ 0.67
LDLR-205ENST00000557933 CCER1Q8TC90 406 aaPredicted RBP19.2■□□□□ 0.66
LDLR-205ENST00000557933 BAZ1BQ9UIG0 1483 aaKnown RBP19.12■□□□□ 0.65
LDLR-205ENST00000557933 NEUROD1Q13562 356 aa19.12■□□□□ 0.65
LDLR-205ENST00000557933 CC2D2AQ9P2K1 1620 aa19.1■□□□□ 0.65
LDLR-205ENST00000557933 CCDC88BA6NC98 1476 aa19■□□□□ 0.63
LDLR-205ENST00000557933 YTHDC1Q96MU7 727 aaKnown RBP18.98■□□□□ 0.63
LDLR-205ENST00000557933 GTF3C3Q9Y5Q9 886 aa18.98■□□□□ 0.63
LDLR-205ENST00000557933 ACIN1Q9UKV3 1341 aaKnown RBP18.96■□□□□ 0.63
LDLR-205ENST00000557933 DIEXFQ68CQ4 756 aaKnown RBP18.95■□□□□ 0.62
LDLR-205ENST00000557933 PELP1Q8IZL8 1130 aaKnown RBP18.93■□□□□ 0.62
LDLR-205ENST00000557933 PRDM2Q13029 1718 aa18.85■□□□□ 0.61
LDLR-205ENST00000557933 RANGAP1P46060 587 aaPredicted RBP18.82■□□□□ 0.6
LDLR-205ENST00000557933 UBTFP17480 764 aaKnown RBP18.76■□□□□ 0.59
LDLR-205ENST00000557933 HNRNPUL2Q1KMD3 747 aaKnown RBP18.73■□□□□ 0.59
LDLR-205ENST00000557933 CFTRP13569 1480 aa18.73■□□□□ 0.59
LDLR-205ENST00000557933 CENPBP07199 599 aaPredicted RBP18.71■□□□□ 0.59
LDLR-205ENST00000557933 ABCC8Q09428 1581 aa18.7■□□□□ 0.58
LDLR-205ENST00000557933 LAMC3Q9Y6N6 1575 aa18.64■□□□□ 0.57
LDLR-205ENST00000557933 SOGA1O94964 1423 aa18.63■□□□□ 0.57
LDLR-205ENST00000557933 CADPSQ9ULU8 1353 aa18.6■□□□□ 0.57
LDLR-205ENST00000557933 CEP162Q5TB80 1403 aa18.59■□□□□ 0.57
LDLR-205ENST00000557933 MIER1Q8N108 512 aa18.59■□□□□ 0.57
LDLR-205ENST00000557933 RUSC2Q8N2Y8 1516 aa18.57■□□□□ 0.56
LDLR-205ENST00000557933 ZNF316A6NFI3 1004 aaPredicted RBP18.55■□□□□ 0.56
LDLR-205ENST00000557933 BIVM-ERCC5R4GMW8 1640 aa18.53■□□□□ 0.56
LDLR-205ENST00000557933 TOP2BQ02880 1626 aa18.48■□□□□ 0.55
LDLR-205ENST00000557933 CSRNP3Q8WYN3 585 aa18.48■□□□□ 0.55
LDLR-205ENST00000557933 WRNQ14191 1432 aaPredicted RBP eCLIP18.45■□□□□ 0.54
LDLR-205ENST00000557933 SYNJ1O43426 1573 aa18.42■□□□□ 0.54
LDLR-205ENST00000557933 DNAJC5BQ9UF47 199 aa18.39■□□□□ 0.54
LDLR-205ENST00000557933 FANCD2Q9BXW9 1451 aa18.38■□□□□ 0.53
LDLR-205ENST00000557933 PDS5BQ9NTI5 1447 aa18.35■□□□□ 0.53
LDLR-205ENST00000557933 CUX1P39880 1505 aa18.35■□□□□ 0.53
LDLR-205ENST00000557933 DNMBPQ6XZF7 1577 aa18.32■□□□□ 0.52
LDLR-205ENST00000557933 TNIKQ9UKE5 1360 aa18.32■□□□□ 0.52
LDLR-205ENST00000557933 NESP48681 1621 aa18.32■□□□□ 0.52
LDLR-205ENST00000557933 CEP164Q9UPV0 1460 aa18.3■□□□□ 0.52
LDLR-205ENST00000557933 EEA1Q15075 1411 aa18.3■□□□□ 0.52
LDLR-205ENST00000557933 KIF21AQ7Z4S6 1674 aa18.3■□□□□ 0.52
LDLR-205ENST00000557933 APLP2Q06481 763 aa18.27■□□□□ 0.52
LDLR-205ENST00000557933 ITGAEP38570 1179 aa18.25■□□□□ 0.51
LDLR-205ENST00000557933 TOPBP1Q92547 1522 aa18.2■□□□□ 0.5
LDLR-205ENST00000557933 URB2Q14146 1524 aaKnown RBP18.17■□□□□ 0.5
LDLR-205ENST00000557933 WDR97A6NE52 1622 aa18.17■□□□□ 0.5
LDLR-205ENST00000557933 GOLGA3Q08378 1498 aa18.17■□□□□ 0.5
LDLR-205ENST00000557933 WDR62O43379 1518 aa18.16■□□□□ 0.5
LDLR-205ENST00000557933 CLIP1P30622 1438 aa18.16■□□□□ 0.5
LDLR-205ENST00000557933 MRC2Q9UBG0 1479 aa18.16■□□□□ 0.5
LDLR-205ENST00000557933 FGD5Q6ZNL6 1462 aa18.12■□□□□ 0.49
LDLR-205ENST00000557933 THOC2Q8NI27 1593 aaKnown RBP18.12■□□□□ 0.49
LDLR-205ENST00000557933 KCNH8Q96L42 1107 aa18.12■□□□□ 0.49
LDLR-205ENST00000557933 BCANQ96GW7 911 aa18.11■□□□□ 0.49
LDLR-205ENST00000557933 ABCA10Q8WWZ4 1543 aa18.09■□□□□ 0.49
LDLR-205ENST00000557933 KIF21BO75037 1637 aa18.09■□□□□ 0.49
LDLR-205ENST00000557933 POLA1P09884 1462 aaPredicted RBP18.08■□□□□ 0.49
LDLR-205ENST00000557933 KANK4Q5T7N3 995 aaPredicted RBP18.07■□□□□ 0.48
LDLR-205ENST00000557933 RAPGEF2Q9Y4G8 1499 aa18.06■□□□□ 0.48
LDLR-205ENST00000557933 TARBP1Q13395 1621 aaKnown RBP18.04■□□□□ 0.48
LDLR-205ENST00000557933 SUPT16HQ9Y5B9 1047 aaKnown RBP18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms