RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 NISCHQ9Y2I1 1504 aa21.73■■□□□ 1.07
LDLR-210ENST00000559340 CCDC180Q9P1Z9 1646 aa19.26■□□□□ 0.67
LDLR-210ENST00000559340 ABCC9O60706 1549 aa18.75■□□□□ 0.59
LDLR-210ENST00000559340 ZCCHC6Q5VYS8 1495 aaKnown RBP18.14■□□□□ 0.49
LDLR-210ENST00000559340 DCAF8L2P0C7V8 631 aa18.1■□□□□ 0.49
LDLR-210ENST00000559340 NACADO15069 1562 aa18.04■□□□□ 0.48
LDLR-210ENST00000559340 DCAF1Q9Y4B6 1507 aa18.03■□□□□ 0.48
LDLR-210ENST00000559340 MYO15BQ96JP2 1530 aa18.02■□□□□ 0.47
LDLR-210ENST00000559340 RB1CC1Q8TDY2 1594 aa18■□□□□ 0.47
LDLR-210ENST00000559340 DNAJC5BQ9UF47 199 aa17.69■□□□□ 0.42
LDLR-210ENST00000559340 UNC13AQ9UPW8 1703 aa17.58■□□□□ 0.4
LDLR-210ENST00000559340 SCRIBQ14160 1630 aa17.52■□□□□ 0.4
LDLR-210ENST00000559340 PABPN1Q86U42 306 aaKnown RBP eCLIP17.44■□□□□ 0.38
LDLR-210ENST00000559340 BICRAQ9NZM4 1560 aa17.34■□□□□ 0.37
LDLR-210ENST00000559340 SHROOM4Q9ULL8 1493 aa17.29■□□□□ 0.36
LDLR-210ENST00000559340 CECR2Q9BXF3 1484 aa16.94■□□□□ 0.3
LDLR-210ENST00000559340 CC2D2AQ9P2K1 1620 aa16.93■□□□□ 0.3
LDLR-210ENST00000559340 EIF4G1Q04637 1599 aaKnown RBP16.89■□□□□ 0.3
LDLR-210ENST00000559340 BAZ1AQ9NRL2 1556 aaPredicted RBP16.85■□□□□ 0.29
LDLR-210ENST00000559340 SMARCA4P51532 1647 aa16.81■□□□□ 0.28
LDLR-210ENST00000559340 MROH2BQ7Z745 1585 aa16.71■□□□□ 0.27
LDLR-210ENST00000559340 SMARCA2P51531 1590 aa16.69■□□□□ 0.26
LDLR-210ENST00000559340 ATAD2BQ9ULI0 1458 aa16.64■□□□□ 0.25
LDLR-210ENST00000559340 PEG3Q9GZU2 1588 aa16.64■□□□□ 0.25
LDLR-210ENST00000559340 RSF1Q96T23 1441 aaPredicted RBP16.63■□□□□ 0.25
LDLR-210ENST00000559340 NCAPD3P42695 1498 aa16.61■□□□□ 0.25
LDLR-210ENST00000559340 WIZO95785 1651 aa16.58■□□□□ 0.24
LDLR-210ENST00000559340 HMGXB3Q12766 1538 aa16.55■□□□□ 0.24
LDLR-210ENST00000559340 BAZ1BQ9UIG0 1483 aaKnown RBP16.54■□□□□ 0.24
LDLR-210ENST00000559340 SUPT5HO00267 1087 aaKnown RBP16.47■□□□□ 0.23
LDLR-210ENST00000559340 TOP2AP11388 1531 aaKnown RBP16.43■□□□□ 0.22
LDLR-210ENST00000559340 DNAJC5Q9H3Z4 198 aa16.41■□□□□ 0.22
LDLR-210ENST00000559340 CUX2O14529 1486 aa16.29■□□□□ 0.2
LDLR-210ENST00000559340 ERCC6Q03468 1493 aa16.24■□□□□ 0.19
LDLR-210ENST00000559340 CCDC88BA6NC98 1476 aa16.22■□□□□ 0.19
LDLR-210ENST00000559340 LAMC3Q9Y6N6 1575 aa16.16■□□□□ 0.18
LDLR-210ENST00000559340 CADPSQ9ULU8 1353 aa16.14■□□□□ 0.17
LDLR-210ENST00000559340 PRDM2Q13029 1718 aa16.09■□□□□ 0.17
LDLR-210ENST00000559340 CFTRP13569 1480 aa16.09■□□□□ 0.17
LDLR-210ENST00000559340 NESP48681 1621 aa16.05■□□□□ 0.16
LDLR-210ENST00000559340 PDS5BQ9NTI5 1447 aa16.05■□□□□ 0.16
LDLR-210ENST00000559340 FANCD2Q9BXW9 1451 aa15.95■□□□□ 0.14
LDLR-210ENST00000559340 KIF21AQ7Z4S6 1674 aa15.94■□□□□ 0.14
LDLR-210ENST00000559340 THOC2Q8NI27 1593 aaKnown RBP15.93■□□□□ 0.14
LDLR-210ENST00000559340 CEP164Q9UPV0 1460 aa15.92■□□□□ 0.14
LDLR-210ENST00000559340 ABCC8Q09428 1581 aa15.83■□□□□ 0.13
LDLR-210ENST00000559340 MRC2Q9UBG0 1479 aa15.83■□□□□ 0.12
LDLR-210ENST00000559340 DNMBPQ6XZF7 1577 aa15.75■□□□□ 0.11
LDLR-210ENST00000559340 WDR62O43379 1518 aa15.74■□□□□ 0.11
LDLR-210ENST00000559340 URB2Q14146 1524 aaKnown RBP15.73■□□□□ 0.11
LDLR-210ENST00000559340 TOPBP1Q92547 1522 aa15.72■□□□□ 0.11
LDLR-210ENST00000559340 WRNQ14191 1432 aaPredicted RBP eCLIP15.71■□□□□ 0.11
LDLR-210ENST00000559340 CUX1P39880 1505 aa15.67■□□□□ 0.1
LDLR-210ENST00000559340 BIVM-ERCC5R4GMW8 1640 aa15.66■□□□□ 0.1
LDLR-210ENST00000559340 TOP2BQ02880 1626 aa15.65■□□□□ 0.1
LDLR-210ENST00000559340 SYNJ1O43426 1573 aa15.61■□□□□ 0.09
LDLR-210ENST00000559340 FGD5Q6ZNL6 1462 aa15.59■□□□□ 0.09
LDLR-210ENST00000559340 TRIM41Q8WV44 630 aa15.59■□□□□ 0.09
LDLR-210ENST00000559340 POLA1P09884 1462 aaPredicted RBP15.59■□□□□ 0.09
LDLR-210ENST00000559340 IFT140Q96RY7 1462 aa15.59■□□□□ 0.09
LDLR-210ENST00000559340 SOGA1O94964 1423 aa15.58■□□□□ 0.08
LDLR-210ENST00000559340 CHIC1Q5VXU3 224 aa15.52■□□□□ 0.08
LDLR-210ENST00000559340 OSCARQ8IYS5 282 aa15.52■□□□□ 0.08
LDLR-210ENST00000559340 TARBP1Q13395 1621 aaKnown RBP15.51■□□□□ 0.07
LDLR-210ENST00000559340 RAD54L2Q9Y4B4 1467 aa15.5■□□□□ 0.07
LDLR-210ENST00000559340 WDR97A6NE52 1622 aa15.5■□□□□ 0.07
LDLR-210ENST00000559340 ABCA10Q8WWZ4 1543 aa15.48■□□□□ 0.07
LDLR-210ENST00000559340 TDRD9Q8NDG6 1382 aaKnown RBP15.41■□□□□ 0.06
LDLR-210ENST00000559340 ZNF608Q9ULD9 1512 aaPredicted RBP15.41■□□□□ 0.06
LDLR-210ENST00000559340 KIF27Q86VH2 1401 aa15.41■□□□□ 0.06
LDLR-210ENST00000559340 EIF4G3O43432 1585 aaKnown RBP15.4■□□□□ 0.06
LDLR-210ENST00000559340 GAPVD1Q14C86 1478 aa15.4■□□□□ 0.06
LDLR-210ENST00000559340 AQRO60306 1485 aaKnown RBP eCLIP15.39■□□□□ 0.053e-8■■■□□ 16.2
LDLR-210ENST00000559340 ABCA5Q8WWZ7 1642 aa15.37■□□□□ 0.05
LDLR-210ENST00000559340 PBRM1Q86U86 1689 aa15.36■□□□□ 0.05
LDLR-210ENST00000559340 GRIN2BQ13224 1484 aa15.36■□□□□ 0.05
LDLR-210ENST00000559340 EEA1Q15075 1411 aa15.33■□□□□ 0.04
LDLR-210ENST00000559340 ERICH3Q5RHP9 1530 aa15.33■□□□□ 0.04
LDLR-210ENST00000559340 MAGI1Q96QZ7 1491 aaPredicted RBP15.3■□□□□ 0.04
LDLR-210ENST00000559340 IGF1RP08069 1367 aa15.26■□□□□ 0.03
LDLR-210ENST00000559340 CUL7Q14999 1698 aa15.26■□□□□ 0.03
LDLR-210ENST00000559340 SNAPC4Q5SXM2 1469 aa15.26■□□□□ 0.03
LDLR-210ENST00000559340 RIMBP3CA6NJZ7 1639 aa15.25■□□□□ 0.03
LDLR-210ENST00000559340 RIMBP3BA6NNM3 1639 aa15.25■□□□□ 0.03
LDLR-210ENST00000559340 RIMBP3Q9UFD9 1639 aa15.25■□□□□ 0.03
LDLR-210ENST00000559340 CHMP7Q8WUX9 453 aaPredicted RBP15.24■□□□□ 0.03
LDLR-210ENST00000559340 CSRNP3Q8WYN3 585 aa15.24■□□□□ 0.03
LDLR-210ENST00000559340 FHAD1B1AJZ9 1412 aa15.24■□□□□ 0.03
LDLR-210ENST00000559340 ARHGEF11O15085 1522 aa15.23■□□□□ 0.03
LDLR-210ENST00000559340 RUSC2Q8N2Y8 1516 aa15.23■□□□□ 0.03
LDLR-210ENST00000559340 FBLN2P98095 1184 aa15.22■□□□□ 0.03
LDLR-210ENST00000559340 SYNJ2O15056 1496 aa15.21■□□□□ 0.03
LDLR-210ENST00000559340 CARMIL1Q5VZK9 1371 aa15.21■□□□□ 0.02
LDLR-210ENST00000559340 ADAMTS12P58397 1594 aa15.2■□□□□ 0.02
LDLR-210ENST00000559340 FAM9AQ8IZU1 332 aaPredicted RBP15.2■□□□□ 0.02
LDLR-210ENST00000559340 CHD1O14646 1710 aa15.2■□□□□ 0.02
LDLR-210ENST00000559340 RAPGEF2Q9Y4G8 1499 aa15.15■□□□□ 0.02
LDLR-210ENST00000559340 GRIN2AQ12879 1464 aa15.14■□□□□ 0.01
LDLR-210ENST00000559340 CYB5RLQ6IPT4 315 aa15.13■□□□□ 0.01
LDLR-210ENST00000559340 PRXQ9BXM0 1461 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 114.1 ms