RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 NISCHQ9Y2I1 1504 aa32.34■■■□□ 2.77
LDLR-204ENST00000545707 SHROOM4Q9ULL8 1493 aa27.98■■■□□ 2.07
LDLR-204ENST00000545707 SUPT5HO00267 1087 aaKnown RBP27.5■■□□□ 1.99
LDLR-204ENST00000545707 ZCCHC6Q5VYS8 1495 aaKnown RBP27.35■■□□□ 1.97
LDLR-204ENST00000545707 CCDC180Q9P1Z9 1646 aa27.24■■□□□ 1.95
LDLR-204ENST00000545707 DCAF8L2P0C7V8 631 aa27.15■■□□□ 1.94
LDLR-204ENST00000545707 CHIC1Q5VXU3 224 aa26.69■■□□□ 1.86
LDLR-204ENST00000545707 MYO15BQ96JP2 1530 aa26.63■■□□□ 1.85
LDLR-204ENST00000545707 DCAF1Q9Y4B6 1507 aa26.37■■□□□ 1.81
LDLR-204ENST00000545707 PCGF6Q9BYE7 350 aa26.09■■□□□ 1.77
LDLR-204ENST00000545707 HRCP23327 699 aa26.06■■□□□ 1.76
LDLR-204ENST00000545707 LOC105371045A0A1W2PR82 267 aa26.04■■□□□ 1.76
LDLR-204ENST00000545707 SCRIBQ14160 1630 aa25.82■■□□□ 1.72
LDLR-204ENST00000545707 ABCC9O60706 1549 aa25.8■■□□□ 1.72
LDLR-204ENST00000545707 RSF1Q96T23 1441 aaPredicted RBP25.72■■□□□ 1.71
LDLR-204ENST00000545707 PPARGC1BQ86YN6 1023 aaKnown RBP25.69■■□□□ 1.7
LDLR-204ENST00000545707 TRIM41Q8WV44 630 aa25.51■■□□□ 1.67
LDLR-204ENST00000545707 FAM9AQ8IZU1 332 aaPredicted RBP25.46■■□□□ 1.67
LDLR-204ENST00000545707 RB1CC1Q8TDY2 1594 aa25.46■■□□□ 1.67
LDLR-204ENST00000545707 TRIM26Q12899 539 aaPredicted RBP25.42■■□□□ 1.66
LDLR-204ENST00000545707 EHMT2Q96KQ7 1210 aa25.36■■□□□ 1.65
LDLR-204ENST00000545707 CECR2Q9BXF3 1484 aa25.36■■□□□ 1.65
LDLR-204ENST00000545707 NACADO15069 1562 aa25.24■■□□□ 1.63
LDLR-204ENST00000545707 MROH2BQ7Z745 1585 aa25.23■■□□□ 1.63
LDLR-204ENST00000545707 WIZO95785 1651 aa25.08■■□□□ 1.61
LDLR-204ENST00000545707 ZEB1P37275 1124 aaPredicted RBP24.82■■□□□ 1.56
LDLR-204ENST00000545707 BAZ1AQ9NRL2 1556 aaPredicted RBP24.81■■□□□ 1.56
LDLR-204ENST00000545707 EIF4G1Q04637 1599 aaKnown RBP24.68■■□□□ 1.54
LDLR-204ENST00000545707 ABCC8Q09428 1581 aa24.64■■□□□ 1.53
LDLR-204ENST00000545707 CCDC88BA6NC98 1476 aa24.61■■□□□ 1.53
LDLR-204ENST00000545707 TOP2AP11388 1531 aaKnown RBP24.59■■□□□ 1.53
LDLR-204ENST00000545707 SMARCA4P51532 1647 aa24.57■■□□□ 1.52
LDLR-204ENST00000545707 TTBK1Q5TCY1 1321 aaPredicted RBP24.54■■□□□ 1.52
LDLR-204ENST00000545707 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.53■■□□□ 1.52
LDLR-204ENST00000545707 PABPN1Q86U42 306 aaKnown RBP eCLIP24.52■■□□□ 1.52
LDLR-204ENST00000545707 SMARCA2P51531 1590 aa24.5■■□□□ 1.51
LDLR-204ENST00000545707 SOGA1O94964 1423 aa24.47■■□□□ 1.51
LDLR-204ENST00000545707 UNC13AQ9UPW8 1703 aa24.47■■□□□ 1.51
LDLR-204ENST00000545707 CCER1Q8TC90 406 aaPredicted RBP24.41■■□□□ 1.5
LDLR-204ENST00000545707 RUSC2Q8N2Y8 1516 aa24.36■■□□□ 1.49
LDLR-204ENST00000545707 CEP162Q5TB80 1403 aa24.35■■□□□ 1.49
LDLR-204ENST00000545707 UBTFP17480 764 aaKnown RBP24.32■■□□□ 1.48
LDLR-204ENST00000545707 CSRNP3Q8WYN3 585 aa24.32■■□□□ 1.48
LDLR-204ENST00000545707 TNIKQ9UKE5 1360 aa24.25■■□□□ 1.47
LDLR-204ENST00000545707 WRNQ14191 1432 aaPredicted RBP eCLIP24.25■■□□□ 1.47
LDLR-204ENST00000545707 BICRAQ9NZM4 1560 aa24.22■■□□□ 1.47
LDLR-204ENST00000545707 SCAF1Q9H7N4 1312 aaKnown RBP24.16■■□□□ 1.46
LDLR-204ENST00000545707 EEA1Q15075 1411 aa24.14■■□□□ 1.45
LDLR-204ENST00000545707 GOLGA3Q08378 1498 aa24.06■■□□□ 1.44
LDLR-204ENST00000545707 SYNJ1O43426 1573 aa24.01■■□□□ 1.43
LDLR-204ENST00000545707 PEG3Q9GZU2 1588 aa24.01■■□□□ 1.43
LDLR-204ENST00000545707 ATAD2BQ9ULI0 1458 aa23.98■■□□□ 1.43
LDLR-204ENST00000545707 RANGAP1P46060 587 aaPredicted RBP23.97■■□□□ 1.43
LDLR-204ENST00000545707 DIEXFQ68CQ4 756 aaKnown RBP23.97■■□□□ 1.43
LDLR-204ENST00000545707 BAZ1BQ9UIG0 1483 aaKnown RBP23.92■■□□□ 1.42
LDLR-204ENST00000545707 HNRNPUL2Q1KMD3 747 aaKnown RBP23.91■■□□□ 1.42
LDLR-204ENST00000545707 CEP164Q9UPV0 1460 aa23.91■■□□□ 1.42
LDLR-204ENST00000545707 CLIP1P30622 1438 aa23.87■■□□□ 1.41
LDLR-204ENST00000545707 NEUROD1Q13562 356 aa23.86■■□□□ 1.41
LDLR-204ENST00000545707 ACIN1Q9UKV3 1341 aaKnown RBP23.83■■□□□ 1.41
LDLR-204ENST00000545707 RAPGEF2Q9Y4G8 1499 aa23.82■■□□□ 1.4
LDLR-204ENST00000545707 KIF21BO75037 1637 aa23.8■■□□□ 1.4
LDLR-204ENST00000545707 APLP2Q06481 763 aa23.73■■□□□ 1.39
LDLR-204ENST00000545707 VPS8Q8N3P4 1428 aa23.73■■□□□ 1.39
LDLR-204ENST00000545707 ZNF316A6NFI3 1004 aaPredicted RBP23.73■■□□□ 1.39
LDLR-204ENST00000545707 GTF3C3Q9Y5Q9 886 aa23.62■■□□□ 1.37
LDLR-204ENST00000545707 TOP2BQ02880 1626 aa23.62■■□□□ 1.37
LDLR-204ENST00000545707 CENPBP07199 599 aaPredicted RBP23.61■■□□□ 1.37
LDLR-204ENST00000545707 YTHDC1Q96MU7 727 aaKnown RBP23.55■■□□□ 1.36
LDLR-204ENST00000545707 PELP1Q8IZL8 1130 aaKnown RBP23.53■■□□□ 1.36
LDLR-204ENST00000545707 KANK4Q5T7N3 995 aaPredicted RBP23.5■■□□□ 1.35
LDLR-204ENST00000545707 MIER1Q8N108 512 aa23.49■■□□□ 1.35
LDLR-204ENST00000545707 PRXQ9BXM0 1461 aa23.48■■□□□ 1.35
LDLR-204ENST00000545707 BIVM-ERCC5R4GMW8 1640 aa23.48■■□□□ 1.35
LDLR-204ENST00000545707 CUX1P39880 1505 aa23.45■■□□□ 1.34
LDLR-204ENST00000545707 ARAP1Q96P48 1450 aa23.44■■□□□ 1.34
LDLR-204ENST00000545707 NCAPD3P42695 1498 aa23.43■■□□□ 1.34
LDLR-204ENST00000545707 ERICH3Q5RHP9 1530 aa23.39■■□□□ 1.34
LDLR-204ENST00000545707 KIF27Q86VH2 1401 aa23.36■■□□□ 1.33
LDLR-204ENST00000545707 HMGXB3Q12766 1538 aa23.36■■□□□ 1.33
LDLR-204ENST00000545707 DHX57Q6P158 1386 aaKnown RBP23.31■■□□□ 1.32
LDLR-204ENST00000545707 CFTRP13569 1480 aa23.31■■□□□ 1.32
LDLR-204ENST00000545707 ITGAEP38570 1179 aa23.28■■□□□ 1.32
LDLR-204ENST00000545707 ARHGAP35Q9NRY4 1499 aa23.23■■□□□ 1.31
LDLR-204ENST00000545707 RRBP1Q9P2E9 1410 aaKnown RBP23.17■■□□□ 1.3
LDLR-204ENST00000545707 CUX2O14529 1486 aa23.17■■□□□ 1.3
LDLR-204ENST00000545707 IGF1RP08069 1367 aa23.17■■□□□ 1.3
LDLR-204ENST00000545707 CLSPNQ9HAW4 1339 aa23.17■■□□□ 1.3
LDLR-204ENST00000545707 CCNB3Q8WWL7 1395 aa23.14■■□□□ 1.3
LDLR-204ENST00000545707 CADPSQ9ULU8 1353 aa23.07■■□□□ 1.28
LDLR-204ENST00000545707 P3H3Q8IVL6 736 aa23.07■■□□□ 1.28
LDLR-204ENST00000545707 CARMIL1Q5VZK9 1371 aa23.07■■□□□ 1.28
LDLR-204ENST00000545707 FGD5Q6ZNL6 1462 aa23.02■■□□□ 1.28
LDLR-204ENST00000545707 ATP1B4Q9UN42 357 aaPredicted RBP23.01■■□□□ 1.27
LDLR-204ENST00000545707 RAB3GAP2Q9H2M9 1393 aa22.99■■□□□ 1.27
LDLR-204ENST00000545707 FAM50AQ14320 339 aaKnown RBP22.94■■□□□ 1.26
LDLR-204ENST00000545707 TIAM1Q13009 1591 aa22.93■■□□□ 1.26
LDLR-204ENST00000545707 PHLDB1Q86UU1 1377 aa22.93■■□□□ 1.26
LDLR-204ENST00000545707 PRDM2Q13029 1718 aa22.91■■□□□ 1.26
LDLR-204ENST00000545707 LRRC9Q6ZRR7 1453 aa22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms