RNA–Protein interactions for RNA: ENST00000544151.1

LDHB-210, Transcript of lactate dehydrogenase B, humanhuman

TSL 2

Gene LDHB, Length 544 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDHB-210ENST00000544151 NISCHQ9Y2I1 1504 aa38.68■■■■□ 3.78
LDHB-210ENST00000544151 CCDC180Q9P1Z9 1646 aa34.63■■■■□ 3.13
LDHB-210ENST00000544151 ABCC9O60706 1549 aa34.12■■■■□ 3.05
LDHB-210ENST00000544151 RB1CC1Q8TDY2 1594 aa32.7■■■□□ 2.83
LDHB-210ENST00000544151 NACADO15069 1562 aa32.56■■■□□ 2.8
LDHB-210ENST00000544151 DCAF8L2P0C7V8 631 aa32.36■■■□□ 2.77
LDHB-210ENST00000544151 MYO15BQ96JP2 1530 aa32.21■■■□□ 2.75
LDHB-210ENST00000544151 ZCCHC6Q5VYS8 1495 aaKnown RBP32.18■■■□□ 2.74
LDHB-210ENST00000544151 UNC13AQ9UPW8 1703 aa32.09■■■□□ 2.73
LDHB-210ENST00000544151 DCAF1Q9Y4B6 1507 aa31.97■■■□□ 2.71
LDHB-210ENST00000544151 PABPN1Q86U42 306 aaKnown RBP eCLIP31.74■■■□□ 2.67
LDHB-210ENST00000544151 BICRAQ9NZM4 1560 aa31.72■■■□□ 2.67
LDHB-210ENST00000544151 AEBP2Q6ZN18 517 aaPredicted RBP31.7■■■□□ 2.67
LDHB-210ENST00000544151 SCRIBQ14160 1630 aa31.58■■■□□ 2.65
LDHB-210ENST00000544151 DNAJC5BQ9UF47 199 aa31.47■■■□□ 2.63
LDHB-210ENST00000544151 SHROOM4Q9ULL8 1493 aa31.33■■■□□ 2.61
LDHB-210ENST00000544151 CHIC1Q5VXU3 224 aa31.05■■■□□ 2.56
LDHB-210ENST00000544151 EIF4G1Q04637 1599 aaKnown RBP30.92■■■□□ 2.54
LDHB-210ENST00000544151 CC2D2AQ9P2K1 1620 aa30.88■■■□□ 2.53
LDHB-210ENST00000544151 CECR2Q9BXF3 1484 aa30.68■■■□□ 2.5
LDHB-210ENST00000544151 SMARCA4P51532 1647 aa30.14■■■□□ 2.42
LDHB-210ENST00000544151 BAZ1AQ9NRL2 1556 aaPredicted RBP30.03■■■□□ 2.4
LDHB-210ENST00000544151 NCAPD3P42695 1498 aa29.98■■■□□ 2.39
LDHB-210ENST00000544151 ATAD2BQ9ULI0 1458 aa29.98■■■□□ 2.39
LDHB-210ENST00000544151 SMARCA2P51531 1590 aa29.98■■■□□ 2.39
LDHB-210ENST00000544151 HMGXB3Q12766 1538 aa29.91■■■□□ 2.38
LDHB-210ENST00000544151 PEG3Q9GZU2 1588 aa29.82■■■□□ 2.36
LDHB-210ENST00000544151 MROH2BQ7Z745 1585 aa29.81■■■□□ 2.36
LDHB-210ENST00000544151 BAZ1BQ9UIG0 1483 aaKnown RBP29.76■■■□□ 2.35
LDHB-210ENST00000544151 WIZO95785 1651 aa29.53■■■□□ 2.32
LDHB-210ENST00000544151 ERCC6Q03468 1493 aa29.46■■■□□ 2.31
LDHB-210ENST00000544151 NESP48681 1621 aa29.43■■■□□ 2.3
LDHB-210ENST00000544151 LAMC3Q9Y6N6 1575 aa29.34■■■□□ 2.29
LDHB-210ENST00000544151 RSF1Q96T23 1441 aaPredicted RBP29.3■■■□□ 2.28
LDHB-210ENST00000544151 CUX2O14529 1486 aa29.23■■■□□ 2.27
LDHB-210ENST00000544151 KIF21AQ7Z4S6 1674 aa29.19■■■□□ 2.26
LDHB-210ENST00000544151 TOP2AP11388 1531 aaKnown RBP29.19■■■□□ 2.26
LDHB-210ENST00000544151 THOC2Q8NI27 1593 aaKnown RBP29.13■■■□□ 2.25
LDHB-210ENST00000544151 CADPSQ9ULU8 1353 aa29.08■■■□□ 2.25
LDHB-210ENST00000544151 PDS5BQ9NTI5 1447 aa29.07■■■□□ 2.24
LDHB-210ENST00000544151 CFTRP13569 1480 aa28.87■■■□□ 2.21
LDHB-210ENST00000544151 MRC2Q9UBG0 1479 aa28.85■■■□□ 2.21
LDHB-210ENST00000544151 PRDM2Q13029 1718 aa28.84■■■□□ 2.21
LDHB-210ENST00000544151 CEP164Q9UPV0 1460 aa28.84■■■□□ 2.21
LDHB-210ENST00000544151 FANCD2Q9BXW9 1451 aa28.81■■■□□ 2.2
LDHB-210ENST00000544151 WDR62O43379 1518 aa28.79■■■□□ 2.2
LDHB-210ENST00000544151 CCDC88BA6NC98 1476 aa28.77■■■□□ 2.2
LDHB-210ENST00000544151 DNAJC5Q9H3Z4 198 aa28.59■■■□□ 2.17
LDHB-210ENST00000544151 URB2Q14146 1524 aaKnown RBP28.55■■■□□ 2.16
LDHB-210ENST00000544151 TOPBP1Q92547 1522 aa28.33■■■□□ 2.13
LDHB-210ENST00000544151 DNMBPQ6XZF7 1577 aa28.3■■■□□ 2.12
LDHB-210ENST00000544151 SUPT5HO00267 1087 aaKnown RBP28.29■■■□□ 2.12
LDHB-210ENST00000544151 ABCC8Q09428 1581 aa28.26■■■□□ 2.11
LDHB-210ENST00000544151 IFT140Q96RY7 1462 aa28.21■■■□□ 2.11
LDHB-210ENST00000544151 ZNF608Q9ULD9 1512 aaPredicted RBP28.12■■■□□ 2.09
LDHB-210ENST00000544151 EIF4G3O43432 1585 aaKnown RBP28.1■■■□□ 2.09
LDHB-210ENST00000544151 TARBP1Q13395 1621 aaKnown RBP28.07■■■□□ 2.08
LDHB-210ENST00000544151 POLA1P09884 1462 aaPredicted RBP28.07■■■□□ 2.08
LDHB-210ENST00000544151 CUX1P39880 1505 aa28■■■□□ 2.07
LDHB-210ENST00000544151 FGD5Q6ZNL6 1462 aa27.96■■■□□ 2.07
LDHB-210ENST00000544151 RAD54L2Q9Y4B4 1467 aa27.93■■■□□ 2.06
LDHB-210ENST00000544151 AQRO60306 1485 aaKnown RBP eCLIP27.89■■■□□ 2.05
LDHB-210ENST00000544151 SOGA1O94964 1423 aa27.88■■■□□ 2.05
LDHB-210ENST00000544151 WDR97A6NE52 1622 aa27.85■■■□□ 2.05
LDHB-210ENST00000544151 OSCARQ8IYS5 282 aa27.85■■■□□ 2.05
LDHB-210ENST00000544151 CHD1O14646 1710 aa27.84■■■□□ 2.05
LDHB-210ENST00000544151 TDRD9Q8NDG6 1382 aaKnown RBP27.76■■■□□ 2.03
LDHB-210ENST00000544151 BIVM-ERCC5R4GMW8 1640 aa27.74■■■□□ 2.03
LDHB-210ENST00000544151 PBRM1Q86U86 1689 aa27.72■■■□□ 2.03
LDHB-210ENST00000544151 TOP2BQ02880 1626 aa27.7■■■□□ 2.02
LDHB-210ENST00000544151 SYNJ1O43426 1573 aa27.69■■■□□ 2.02
LDHB-210ENST00000544151 SNAPC4Q5SXM2 1469 aa27.69■■■□□ 2.02
LDHB-210ENST00000544151 WRNQ14191 1432 aaPredicted RBP eCLIP27.67■■■□□ 2.02
LDHB-210ENST00000544151 ABCA10Q8WWZ4 1543 aa27.65■■■□□ 2.02
LDHB-210ENST00000544151 ABCA5Q8WWZ7 1642 aa27.64■■■□□ 2.02
LDHB-210ENST00000544151 GRIN2BQ13224 1484 aa27.63■■■□□ 2.01
LDHB-210ENST00000544151 RIMBP3CA6NJZ7 1639 aa27.62■■■□□ 2.01
LDHB-210ENST00000544151 RIMBP3BA6NNM3 1639 aa27.62■■■□□ 2.01
LDHB-210ENST00000544151 RIMBP3Q9UFD9 1639 aa27.62■■■□□ 2.01
LDHB-210ENST00000544151 MAGI1Q96QZ7 1491 aaPredicted RBP27.61■■■□□ 2.01
LDHB-210ENST00000544151 TRIM41Q8WV44 630 aa27.6■■■□□ 2.01
LDHB-210ENST00000544151 GAPVD1Q14C86 1478 aa27.59■■■□□ 2.01
LDHB-210ENST00000544151 FBLN2P98095 1184 aa27.59■■■□□ 2.01
LDHB-210ENST00000544151 ARHGEF11O15085 1522 aa27.54■■■□□ 2
LDHB-210ENST00000544151 SYNJ2O15056 1496 aa27.51■■□□□ 1.99
LDHB-210ENST00000544151 CHMP7Q8WUX9 453 aaPredicted RBP27.44■■□□□ 1.98
LDHB-210ENST00000544151 CLASP1Q7Z460 1538 aa27.44■■□□□ 1.98
LDHB-210ENST00000544151 ADAMTS12P58397 1594 aa27.41■■□□□ 1.98
LDHB-210ENST00000544151 PHF23Q9BUL5 403 aaPredicted RBP27.41■■□□□ 1.98
LDHB-210ENST00000544151 ERICH3Q5RHP9 1530 aa27.32■■□□□ 1.96
LDHB-210ENST00000544151 GRIN2AQ12879 1464 aa27.31■■□□□ 1.96
LDHB-210ENST00000544151 ARAP1Q96P48 1450 aa27.29■■□□□ 1.96
LDHB-210ENST00000544151 FHAD1B1AJZ9 1412 aa27.24■■□□□ 1.95
LDHB-210ENST00000544151 CEP170Q5SW79 1584 aa27.22■■□□□ 1.95
LDHB-210ENST00000544151 CYB5RLQ6IPT4 315 aa27.19■■□□□ 1.94
LDHB-210ENST00000544151 NUP160Q12769 1436 aa27.16■■□□□ 1.94
LDHB-210ENST00000544151 KIF27Q86VH2 1401 aa27.1■■□□□ 1.93
LDHB-210ENST00000544151 CUL7Q14999 1698 aa27.08■■□□□ 1.93
LDHB-210ENST00000544151 SHROOM2Q13796 1616 aa27.07■■□□□ 1.92
LDHB-210ENST00000544151 ERCC6L2Q5T890 1561 aa27.04■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms