RNA–Protein interactions for RNA: ENST00000553612.5

GTF2A1-203, Transcript of general transcription factor IIA subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GTF2A1, Length 6,306 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2A1-203ENST00000553612 PELP1Q8IZL8 1130 aaKnown RBP15.84■□□□□ 0.13
GTF2A1-203ENST00000553612 MYT1Q01538 1121 aa15.69■□□□□ 0.1
GTF2A1-203ENST00000553612 ERICH6Q7L0X2 663 aa14.67□□□□□ -0.06
GTF2A1-203ENST00000553612 TTBK1Q5TCY1 1321 aaPredicted RBP14.62□□□□□ -0.07
GTF2A1-203ENST00000553612 PPARGC1BQ86YN6 1023 aaKnown RBP14.43□□□□□ -0.1
GTF2A1-203ENST00000553612 PRKCSHP14314 528 aaPredicted RBP14.39□□□□□ -0.11
GTF2A1-203ENST00000553612 CENPBP07199 599 aaPredicted RBP14.37□□□□□ -0.11
GTF2A1-203ENST00000553612 BCL11AQ9H165 835 aa14.37□□□□□ -0.11
GTF2A1-203ENST00000553612 PCGF6Q9BYE7 350 aa14.36□□□□□ -0.11
GTF2A1-203ENST00000553612 HRCP23327 699 aa14.32□□□□□ -0.12
GTF2A1-203ENST00000553612 SCAF1Q9H7N4 1312 aaKnown RBP14.14□□□□□ -0.15
GTF2A1-203ENST00000553612 SLC24A1O60721 1099 aa14.14□□□□□ -0.15
GTF2A1-203ENST00000553612 YTHDC1Q96MU7 727 aaKnown RBP14.1□□□□□ -0.15
GTF2A1-203ENST00000553612 EHMT2Q96KQ7 1210 aa14.08□□□□□ -0.16
GTF2A1-203ENST00000553612 GTF3C3Q9Y5Q9 886 aa14.03□□□□□ -0.16
GTF2A1-203ENST00000553612 SUPT5HO00267 1087 aaKnown RBP13.98□□□□□ -0.17
GTF2A1-203ENST00000553612 FAM9AQ8IZU1 332 aaPredicted RBP13.97□□□□□ -0.17
GTF2A1-203ENST00000553612 EIF5BO60841 1220 aaKnown RBP13.85□□□□□ -0.19
GTF2A1-203ENST00000553612 ACIN1Q9UKV3 1341 aaKnown RBP13.71□□□□□ -0.22
GTF2A1-203ENST00000553612 ANP32EQ9BTT0 268 aa13.61□□□□□ -0.23
GTF2A1-203ENST00000553612 RANGAP1P46060 587 aaPredicted RBP13.6□□□□□ -0.23
GTF2A1-203ENST00000553612 ZEB1P37275 1124 aaPredicted RBP13.58□□□□□ -0.23
GTF2A1-203ENST00000553612 NEUROD1Q13562 356 aa13.58□□□□□ -0.24
GTF2A1-203ENST00000553612 CCDC136Q96JN2 1154 aa13.55□□□□□ -0.24
GTF2A1-203ENST00000553612 CCER1Q8TC90 406 aaPredicted RBP13.54□□□□□ -0.24
GTF2A1-203ENST00000553612 SHROOM4Q9ULL8 1493 aa13.53□□□□□ -0.24
GTF2A1-203ENST00000553612 CSRNP3Q8WYN3 585 aa13.49□□□□□ -0.25
GTF2A1-203ENST00000553612 APLP2Q06481 763 aa13.45□□□□□ -0.26
GTF2A1-203ENST00000553612 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.45□□□□□ -0.26
GTF2A1-203ENST00000553612 DCAF8L2P0C7V8 631 aa13.44□□□□□ -0.26
GTF2A1-203ENST00000553612 PODXL2Q9NZ53 605 aa13.44□□□□□ -0.26
GTF2A1-203ENST00000553612 ANO8Q9HCE9 1232 aaPredicted RBP13.42□□□□□ -0.26
GTF2A1-203ENST00000553612 RTN4Q9NQC3 1192 aaKnown RBP13.41□□□□□ -0.26
GTF2A1-203ENST00000553612 BCANQ96GW7 911 aa13.39□□□□□ -0.27
GTF2A1-203ENST00000553612 PLEKHG5O94827 1062 aa13.37□□□□□ -0.27
GTF2A1-203ENST00000553612 GLIPR1L2Q4G1C9 344 aa13.32□□□□□ -0.28
GTF2A1-203ENST00000553612 RTL5Q5HYW3 569 aaPredicted RBP13.3□□□□□ -0.28
GTF2A1-203ENST00000553612 DIEXFQ68CQ4 756 aaKnown RBP13.28□□□□□ -0.28
GTF2A1-203ENST00000553612 A0A0U1RQG5 324 aaPredicted RBP13.25□□□□□ -0.29
GTF2A1-203ENST00000553612 DAXXQ9UER7 740 aaPredicted RBP13.25□□□□□ -0.29
GTF2A1-203ENST00000553612 NEFLP07196 543 aa13.24□□□□□ -0.29
GTF2A1-203ENST00000553612 PKNOX2Q96KN3 472 aa13.24□□□□□ -0.29
GTF2A1-203ENST00000553612 NBR1Q14596 966 aa13.18□□□□□ -0.3
GTF2A1-203ENST00000553612 MYT1LQ9UL68 1186 aa13.18□□□□□ -0.3
GTF2A1-203ENST00000553612 TRIM26Q12899 539 aaPredicted RBP13.1□□□□□ -0.31
GTF2A1-203ENST00000553612 SALL2Q9Y467 1007 aaPredicted RBP13.09□□□□□ -0.31
GTF2A1-203ENST00000553612 LOC105371045A0A1W2PR82 267 aa13.06□□□□□ -0.32
GTF2A1-203ENST00000553612 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.06□□□□□ -0.32
GTF2A1-203ENST00000553612 DEKP35659 375 aaKnown RBP13.04□□□□□ -0.32
GTF2A1-203ENST00000553612 CLSPNQ9HAW4 1339 aa13□□□□□ -0.33
GTF2A1-203ENST00000553612 VSIG10Q8N0Z9 540 aa12.96□□□□□ -0.34
GTF2A1-203ENST00000553612 AMER1Q5JTC6 1135 aaPredicted RBP12.95□□□□□ -0.34
GTF2A1-203ENST00000553612 UBE2Q2Q8WVN8 375 aa12.92□□□□□ -0.34
GTF2A1-203ENST00000553612 TIMELESSQ9UNS1 1208 aa12.89□□□□□ -0.35
GTF2A1-203ENST00000553612 PDE4CQ08493 712 aa12.85□□□□□ -0.35
GTF2A1-203ENST00000553612 ZNF316A6NFI3 1004 aaPredicted RBP12.85□□□□□ -0.35
GTF2A1-203ENST00000553612 ITGAEP38570 1179 aa12.82□□□□□ -0.36
GTF2A1-203ENST00000553612 CNGB1Q14028 1251 aaPredicted RBP12.82□□□□□ -0.36
GTF2A1-203ENST00000553612 CDK11AQ9UQ88 783 aaPredicted RBP12.81□□□□□ -0.36
GTF2A1-203ENST00000553612 TSHZ2Q9NRE2 1034 aa12.81□□□□□ -0.36
GTF2A1-203ENST00000553612 FKBP8Q14318 412 aa12.78□□□□□ -0.36
GTF2A1-203ENST00000553612 ARID4BQ4LE39 1312 aaPredicted RBP12.72□□□□□ -0.37
GTF2A1-203ENST00000553612 HAP1P54257 671 aaPredicted RBP12.71□□□□□ -0.38
GTF2A1-203ENST00000553612 AEBP2Q6ZN18 517 aaPredicted RBP12.7□□□□□ -0.38
GTF2A1-203ENST00000553612 SUPT16HQ9Y5B9 1047 aaKnown RBP12.7□□□□□ -0.38
GTF2A1-203ENST00000553612 NPM2Q86SE8 214 aaKnown RBP12.68□□□□□ -0.38
GTF2A1-203ENST00000553612 ARXQ96QS3 562 aa12.68□□□□□ -0.38
GTF2A1-203ENST00000553612 ERICH6BQ5W0A0 696 aa12.67□□□□□ -0.38
GTF2A1-203ENST00000553612 POLR3GLQ9BT43 218 aa12.67□□□□□ -0.38
GTF2A1-203ENST00000553612 RBM19Q9Y4C8 960 aaKnown RBP12.66□□□□□ -0.38
GTF2A1-203ENST00000553612 PDIA4P13667 645 aaKnown RBP12.65□□□□□ -0.38
GTF2A1-203ENST00000553612 NAP1L5Q96NT1 182 aaPredicted RBP12.65□□□□□ -0.38
GTF2A1-203ENST00000553612 IL27Q8NEV9 243 aa12.62□□□□□ -0.39
GTF2A1-203ENST00000553612 HNRNPUL2Q1KMD3 747 aaKnown RBP12.6□□□□□ -0.39
GTF2A1-203ENST00000553612 ANP32AP39687 249 aaKnown RBP12.58□□□□□ -0.4
GTF2A1-203ENST00000553612 MIER1Q8N108 512 aa12.57□□□□□ -0.4
GTF2A1-203ENST00000553612 BCL11BQ9C0K0 894 aaPredicted RBP12.57□□□□□ -0.4
GTF2A1-203ENST00000553612 NEFMP07197 916 aa12.56□□□□□ -0.4
GTF2A1-203ENST00000553612 IRX6P78412 446 aaPredicted RBP12.56□□□□□ -0.4
GTF2A1-203ENST00000553612 CHIC1Q5VXU3 224 aa12.54□□□□□ -0.4
GTF2A1-203ENST00000553612 KLHL34Q8N239 644 aa12.53□□□□□ -0.4
GTF2A1-203ENST00000553612 ZMYND15Q9H091 742 aa12.52□□□□□ -0.4
GTF2A1-203ENST00000553612 PAXIP1Q6ZW49 1069 aaPredicted RBP12.52□□□□□ -0.41
GTF2A1-203ENST00000553612 ZBTB47Q9UFB7 747 aaPredicted RBP12.51□□□□□ -0.41
GTF2A1-203ENST00000553612 CDK11BP21127 795 aaKnown RBP12.5□□□□□ -0.41
GTF2A1-203ENST00000553612 ARID3AQ99856 593 aa12.49□□□□□ -0.41
GTF2A1-203ENST00000553612 TRIM41Q8WV44 630 aa12.48□□□□□ -0.41
GTF2A1-203ENST00000553612 HSP90AA2PQ14568 343 aaPredicted RBP12.47□□□□□ -0.41
GTF2A1-203ENST00000553612 USP35Q9P2H5 1018 aa12.46□□□□□ -0.41
GTF2A1-203ENST00000553612 HSP90AA1P07900 732 aaKnown RBP12.46□□□□□ -0.42
GTF2A1-203ENST00000553612 LAS1LQ9Y4W2 734 aaKnown RBP12.46□□□□□ -0.42
GTF2A1-203ENST00000553612 NOP58Q9Y2X3 529 aaKnown RBP12.44□□□□□ -0.42
GTF2A1-203ENST00000553612 RBM10P98175 930 aaKnown RBP12.42□□□□□ -0.42
GTF2A1-203ENST00000553612 RSPH6AQ9H0K4 717 aa12.38□□□□□ -0.43
GTF2A1-203ENST00000553612 TNNT2P45379 298 aaPredicted RBP12.36□□□□□ -0.43
GTF2A1-203ENST00000553612 DHX37Q8IY37 1157 aaKnown RBP12.35□□□□□ -0.43
GTF2A1-203ENST00000553612 TRIM52Q96A61 297 aa12.35□□□□□ -0.43
GTF2A1-203ENST00000553612 ZNF326Q5BKZ1 582 aaKnown RBP12.34□□□□□ -0.43
GTF2A1-203ENST00000553612 TULP1O00294 542 aaPredicted RBP12.31□□□□□ -0.44
GTF2A1-203ENST00000553612 TAF7LQ5H9L4 462 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms