RNA–Protein interactions for RNA: ENST00000556268.1

GTF2A1-204, Transcript of general transcription factor IIA subunit 1, humanhuman

TSL 5

Gene GTF2A1, Length 864 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2A1-204ENST00000556268 AEBP2Q6ZN18 517 aaPredicted RBP35.77■■■■□ 3.32
GTF2A1-204ENST00000556268 CHIC1Q5VXU3 224 aa34.61■■■■□ 3.13
GTF2A1-204ENST00000556268 PHF23Q9BUL5 403 aaPredicted RBP30.42■■■□□ 2.46
GTF2A1-204ENST00000556268 SENP3Q9H4L4 574 aaPredicted RBP30.37■■■□□ 2.45
GTF2A1-204ENST00000556268 FOXD1Q16676 465 aa28.24■■■□□ 2.11
GTF2A1-204ENST00000556268 PLPPR3Q6T4P5 718 aa27.95■■■□□ 2.06
GTF2A1-204ENST00000556268 PPP6R1Q9UPN7 881 aa26.94■■□□□ 1.9
GTF2A1-204ENST00000556268 ADRA2BP18089 450 aa26.89■■□□□ 1.9
GTF2A1-204ENST00000556268 PIAS4Q8N2W9 510 aaPredicted RBP26.57■■□□□ 1.84
GTF2A1-204ENST00000556268 MSH5O43196 834 aa26.13■■□□□ 1.77
GTF2A1-204ENST00000556268 PPP4R3CPQ6ZMV5 832 aa24.61■■□□□ 1.53
GTF2A1-204ENST00000556268 SCAF1Q9H7N4 1312 aaKnown RBP24.55■■□□□ 1.52
GTF2A1-204ENST00000556268 MAPK8IP2Q13387 824 aaPredicted RBP24.49■■□□□ 1.51
GTF2A1-204ENST00000556268 POTEDQ86YR6 584 aa24.36■■□□□ 1.49
GTF2A1-204ENST00000556268 DMRT2Q9Y5R5 561 aa24.2■■□□□ 1.46
GTF2A1-204ENST00000556268 CNKSR2Q8WXI2 1034 aa23.97■■□□□ 1.43
GTF2A1-204ENST00000556268 NCBP3Q53F19 620 aaKnown RBP23.84■■□□□ 1.41
GTF2A1-204ENST00000556268 KCNA4P22459 653 aa23.72■■□□□ 1.39
GTF2A1-204ENST00000556268 RNF216Q9NWF9 866 aaPredicted RBP23.58■■□□□ 1.37
GTF2A1-204ENST00000556268 HOXD11P31277 338 aaPredicted RBP23.57■■□□□ 1.36
GTF2A1-204ENST00000556268 NPM3O75607 178 aaKnown RBP23.54■■□□□ 1.36
GTF2A1-204ENST00000556268 DCAF8L1A6NGE4 600 aa23.18■■□□□ 1.3
GTF2A1-204ENST00000556268 DNAJC5BQ9UF47 199 aa22.86■■□□□ 1.25
GTF2A1-204ENST00000556268 NISCHQ9Y2I1 1504 aa22.52■■□□□ 1.19
GTF2A1-204ENST00000556268 SLC4A1APQ9BWU0 796 aaKnown RBP22.51■■□□□ 1.19
GTF2A1-204ENST00000556268 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.46■■□□□ 1.19
GTF2A1-204ENST00000556268 RNF39Q9H2S5 420 aa22.38■■□□□ 1.17
GTF2A1-204ENST00000556268 SLC4A2P04920 1241 aa22.31■■□□□ 1.16
GTF2A1-204ENST00000556268 U3KPZ7 1027 aaPredicted RBP22.1■■□□□ 1.13
GTF2A1-204ENST00000556268 C1QBPQ07021 282 aaKnown RBP22.07■■□□□ 1.12
GTF2A1-204ENST00000556268 CACNB1Q02641 598 aaPredicted RBP22■■□□□ 1.11
GTF2A1-204ENST00000556268 FOXD4L1Q9NU39 408 aa21.9■■□□□ 1.1
GTF2A1-204ENST00000556268 ZBTB22O15209 634 aa21.84■■□□□ 1.09
GTF2A1-204ENST00000556268 MYCNP04198 464 aaPredicted RBP21.75■■□□□ 1.07
GTF2A1-204ENST00000556268 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.65■■□□□ 1.06
GTF2A1-204ENST00000556268 HNRNPUL2Q1KMD3 747 aaKnown RBP21.65■■□□□ 1.06
GTF2A1-204ENST00000556268 SAMD1Q6SPF0 538 aaPredicted RBP21.58■■□□□ 1.05
GTF2A1-204ENST00000556268 SPINK5Q9NQ38 1064 aaPredicted RBP21.57■■□□□ 1.04
GTF2A1-204ENST00000556268 EHMT2Q96KQ7 1210 aa21.56■■□□□ 1.04
GTF2A1-204ENST00000556268 APLP2Q06481 763 aa21.5■■□□□ 1.03
GTF2A1-204ENST00000556268 CAPN15O75808 1086 aa21.48■■□□□ 1.03
GTF2A1-204ENST00000556268 CSRNP3Q8WYN3 585 aa21.43■■□□□ 1.02
GTF2A1-204ENST00000556268 TRHP20396 242 aaPredicted RBP21.31■■□□□ 1
GTF2A1-204ENST00000556268 ZNF219Q9P2Y4 722 aaPredicted RBP21.28■■□□□ 1
GTF2A1-204ENST00000556268 ATF5Q9Y2D1 282 aaPredicted RBP21.22■□□□□ 0.99
GTF2A1-204ENST00000556268 DSG3P32926 999 aa21.19■□□□□ 0.98
GTF2A1-204ENST00000556268 ATXN8OSP0DMR3 200 aa21.12■□□□□ 0.97
GTF2A1-204ENST00000556268 ABCB7O75027 752 aa21.07■□□□□ 0.96
GTF2A1-204ENST00000556268 POLA2Q14181 598 aa20.89■□□□□ 0.93
GTF2A1-204ENST00000556268 ZBTB12Q9Y330 459 aaPredicted RBP20.5■□□□□ 0.87
GTF2A1-204ENST00000556268 ABCC9O60706 1549 aa20.36■□□□□ 0.85
GTF2A1-204ENST00000556268 FBLN2P98095 1184 aa20.3■□□□□ 0.84
GTF2A1-204ENST00000556268 MKRN4PQ13434 485 aaPredicted RBP20.28■□□□□ 0.84
GTF2A1-204ENST00000556268 OSCARQ8IYS5 282 aa20.23■□□□□ 0.83
GTF2A1-204ENST00000556268 RBM42Q9BTD8 480 aaKnown RBP20.18■□□□□ 0.82
GTF2A1-204ENST00000556268 CCDC180Q9P1Z9 1646 aa20.14■□□□□ 0.81
GTF2A1-204ENST00000556268 SPDYE2BA6NHP3 402 aa19.93■□□□□ 0.78
GTF2A1-204ENST00000556268 SPDYE6P0CI01 402 aa19.93■□□□□ 0.78
GTF2A1-204ENST00000556268 SPDYE2Q495Y8 402 aa19.93■□□□□ 0.78
GTF2A1-204ENST00000556268 AKT1S1Q96B36 256 aa19.87■□□□□ 0.77
GTF2A1-204ENST00000556268 ZNF692Q9BU19 519 aaPredicted RBP19.8■□□□□ 0.76
GTF2A1-204ENST00000556268 SSUH2Q9Y2M2 353 aa19.77■□□□□ 0.76
GTF2A1-204ENST00000556268 REM2Q8IYK8 340 aaPredicted RBP19.69■□□□□ 0.74
GTF2A1-204ENST00000556268 SPDYE4A6NLX3 237 aa19.65■□□□□ 0.74
GTF2A1-204ENST00000556268 PABPN1Q86U42 306 aaKnown RBP eCLIP19.55■□□□□ 0.72
GTF2A1-204ENST00000556268 PITPNM1O00562 1244 aa19.5■□□□□ 0.71
GTF2A1-204ENST00000556268 CHRDL2Q6WN34 429 aa19.48■□□□□ 0.71
GTF2A1-204ENST00000556268 SPDYE1Q8NFV5 336 aaPredicted RBP19.42■□□□□ 0.7
GTF2A1-204ENST00000556268 FKBP8Q14318 412 aa19.4■□□□□ 0.7
GTF2A1-204ENST00000556268 CLEC11AQ9Y240 323 aa19.36■□□□□ 0.69
GTF2A1-204ENST00000556268 RB1CC1Q8TDY2 1594 aa19.29■□□□□ 0.68
GTF2A1-204ENST00000556268 PROM2Q8N271 834 aa19.29■□□□□ 0.68
GTF2A1-204ENST00000556268 POTEHQ6S545 545 aa19.21■□□□□ 0.67
GTF2A1-204ENST00000556268 PIP4P2Q8N4L2 257 aa19.18■□□□□ 0.66
GTF2A1-204ENST00000556268 NACADO15069 1562 aa19.18■□□□□ 0.66
GTF2A1-204ENST00000556268 FXR2P51116 673 aaKnown RBP eCLIP19.17■□□□□ 0.66
GTF2A1-204ENST00000556268 PRR29P0C7W0 189 aa19.12■□□□□ 0.65
GTF2A1-204ENST00000556268 STAG3Q9UJ98 1225 aa19.12■□□□□ 0.65
GTF2A1-204ENST00000556268 DCAF8L2P0C7V8 631 aa19.1■□□□□ 0.65
GTF2A1-204ENST00000556268 PRKAR2AP13861 404 aaKnown RBP18.99■□□□□ 0.63
GTF2A1-204ENST00000556268 CHADLQ6NUI6 762 aa18.93■□□□□ 0.62
GTF2A1-204ENST00000556268 MYO15BQ96JP2 1530 aa18.92■□□□□ 0.62
GTF2A1-204ENST00000556268 CREBZFQ9NS37 354 aa18.84■□□□□ 0.61
GTF2A1-204ENST00000556268 BICRAQ9NZM4 1560 aa18.78■□□□□ 0.6
GTF2A1-204ENST00000556268 UNC13AQ9UPW8 1703 aa18.77■□□□□ 0.59
GTF2A1-204ENST00000556268 FBXO3Q9UK99 471 aa18.74■□□□□ 0.59
GTF2A1-204ENST00000556268 FARP1Q9Y4F1 1045 aaPredicted RBP18.71■□□□□ 0.59
GTF2A1-204ENST00000556268 MIER1Q8N108 512 aa18.64■□□□□ 0.57
GTF2A1-204ENST00000556268 HAX1O00165 279 aa18.62■□□□□ 0.57
GTF2A1-204ENST00000556268 DCAF1Q9Y4B6 1507 aa18.61■□□□□ 0.57
GTF2A1-204ENST00000556268 MNX1P50219 401 aaPredicted RBP18.6■□□□□ 0.57
GTF2A1-204ENST00000556268 PLCD3Q8N3E9 789 aa18.6■□□□□ 0.57
GTF2A1-204ENST00000556268 ZCCHC6Q5VYS8 1495 aaKnown RBP18.59■□□□□ 0.57
GTF2A1-204ENST00000556268 PLEKHG5O94827 1062 aa18.56■□□□□ 0.56
GTF2A1-204ENST00000556268 VASPP50552 380 aaPredicted RBP18.55■□□□□ 0.56
GTF2A1-204ENST00000556268 C19orf67A6NJJ6 358 aa18.53■□□□□ 0.56
GTF2A1-204ENST00000556268 SHROOM4Q9ULL8 1493 aa18.51■□□□□ 0.55
GTF2A1-204ENST00000556268 EVX2Q03828 476 aa18.48■□□□□ 0.55
GTF2A1-204ENST00000556268 NPM1P06748 294 aaKnown RBP eCLIP18.47■□□□□ 0.55
GTF2A1-204ENST00000556268 CD44P16070 742 aaKnown RBP18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms