RNA–Protein interactions for RNA: ENST00000397102.5

SEC13-206, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 3

Gene SEC13, Length 582 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-206ENST00000397102 NISCHQ9Y2I1 1504 aa38.28■■■■□ 3.72
SEC13-206ENST00000397102 ABCC9O60706 1549 aa34.94■■■■□ 3.18
SEC13-206ENST00000397102 CCDC180Q9P1Z9 1646 aa34.61■■■■□ 3.13
SEC13-206ENST00000397102 RB1CC1Q8TDY2 1594 aa33.12■■■□□ 2.89
SEC13-206ENST00000397102 DNAJC5BQ9UF47 199 aa33.11■■■□□ 2.89
SEC13-206ENST00000397102 NACADO15069 1562 aa32.79■■■□□ 2.84
SEC13-206ENST00000397102 PABPN1Q86U42 306 aaKnown RBP eCLIP32.4■■■□□ 2.78
SEC13-206ENST00000397102 UNC13AQ9UPW8 1703 aa32.4■■■□□ 2.78
SEC13-206ENST00000397102 DCAF8L2P0C7V8 631 aa32.39■■■□□ 2.78
SEC13-206ENST00000397102 MYO15BQ96JP2 1530 aa32.21■■■□□ 2.75
SEC13-206ENST00000397102 BICRAQ9NZM4 1560 aa32.15■■■□□ 2.74
SEC13-206ENST00000397102 SHROOM4Q9ULL8 1493 aa31.72■■■□□ 2.67
SEC13-206ENST00000397102 ZCCHC6Q5VYS8 1495 aaKnown RBP31.65■■■□□ 2.66
SEC13-206ENST00000397102 DCAF1Q9Y4B6 1507 aa31.63■■■□□ 2.65
SEC13-206ENST00000397102 CC2D2AQ9P2K1 1620 aa31.57■■■□□ 2.64
SEC13-206ENST00000397102 CECR2Q9BXF3 1484 aa31.53■■■□□ 2.64
SEC13-206ENST00000397102 SCRIBQ14160 1630 aa31.44■■■□□ 2.62
SEC13-206ENST00000397102 EIF4G1Q04637 1599 aaKnown RBP31.4■■■□□ 2.62
SEC13-206ENST00000397102 DNAJC5Q9H3Z4 198 aa30.76■■■□□ 2.51
SEC13-206ENST00000397102 CUX2O14529 1486 aa30.34■■■□□ 2.45
SEC13-206ENST00000397102 NCAPD3P42695 1498 aa30.25■■■□□ 2.43
SEC13-206ENST00000397102 ERCC6Q03468 1493 aa30.2■■■□□ 2.43
SEC13-206ENST00000397102 ATAD2BQ9ULI0 1458 aa30.09■■■□□ 2.41
SEC13-206ENST00000397102 HMGXB3Q12766 1538 aa30.01■■■□□ 2.4
SEC13-206ENST00000397102 SMARCA2P51531 1590 aa30■■■□□ 2.39
SEC13-206ENST00000397102 SMARCA4P51532 1647 aa29.97■■■□□ 2.39
SEC13-206ENST00000397102 NESP48681 1621 aa29.89■■■□□ 2.37
SEC13-206ENST00000397102 BAZ1BQ9UIG0 1483 aaKnown RBP29.77■■■□□ 2.36
SEC13-206ENST00000397102 BAZ1AQ9NRL2 1556 aaPredicted RBP29.76■■■□□ 2.35
SEC13-206ENST00000397102 THOC2Q8NI27 1593 aaKnown RBP29.73■■■□□ 2.35
SEC13-206ENST00000397102 PEG3Q9GZU2 1588 aa29.7■■■□□ 2.35
SEC13-206ENST00000397102 LAMC3Q9Y6N6 1575 aa29.67■■■□□ 2.34
SEC13-206ENST00000397102 KIF21AQ7Z4S6 1674 aa29.54■■■□□ 2.32
SEC13-206ENST00000397102 MROH2BQ7Z745 1585 aa29.47■■■□□ 2.31
SEC13-206ENST00000397102 PDS5BQ9NTI5 1447 aa29.47■■■□□ 2.31
SEC13-206ENST00000397102 CADPSQ9ULU8 1353 aa29.28■■■□□ 2.28
SEC13-206ENST00000397102 MRC2Q9UBG0 1479 aa29.25■■■□□ 2.27
SEC13-206ENST00000397102 WDR62O43379 1518 aa29.21■■■□□ 2.27
SEC13-206ENST00000397102 TRIM41Q8WV44 630 aa29.19■■■□□ 2.26
SEC13-206ENST00000397102 WIZO95785 1651 aa29.12■■■□□ 2.25
SEC13-206ENST00000397102 CEP164Q9UPV0 1460 aa29.05■■■□□ 2.24
SEC13-206ENST00000397102 FANCD2Q9BXW9 1451 aa28.97■■■□□ 2.23
SEC13-206ENST00000397102 CFTRP13569 1480 aa28.88■■■□□ 2.21
SEC13-206ENST00000397102 OSCARQ8IYS5 282 aa28.82■■■□□ 2.2
SEC13-206ENST00000397102 URB2Q14146 1524 aaKnown RBP28.75■■■□□ 2.19
SEC13-206ENST00000397102 TOP2AP11388 1531 aaKnown RBP28.73■■■□□ 2.19
SEC13-206ENST00000397102 RSF1Q96T23 1441 aaPredicted RBP28.69■■■□□ 2.18
SEC13-206ENST00000397102 PRDM2Q13029 1718 aa28.64■■■□□ 2.18
SEC13-206ENST00000397102 RIMBP3CA6NJZ7 1639 aa28.55■■■□□ 2.16
SEC13-206ENST00000397102 RIMBP3BA6NNM3 1639 aa28.55■■■□□ 2.16
SEC13-206ENST00000397102 RIMBP3Q9UFD9 1639 aa28.55■■■□□ 2.16
SEC13-206ENST00000397102 IFT140Q96RY7 1462 aa28.48■■■□□ 2.15
SEC13-206ENST00000397102 ZNF608Q9ULD9 1512 aaPredicted RBP28.46■■■□□ 2.15
SEC13-206ENST00000397102 ARHGEF11O15085 1522 aa28.4■■■□□ 2.14
SEC13-206ENST00000397102 TOPBP1Q92547 1522 aa28.38■■■□□ 2.13
SEC13-206ENST00000397102 CCDC88BA6NC98 1476 aa28.37■■■□□ 2.13
SEC13-206ENST00000397102 EIF4G3O43432 1585 aaKnown RBP28.33■■■□□ 2.12
SEC13-206ENST00000397102 ABCC8Q09428 1581 aa28.31■■■□□ 2.12
SEC13-206ENST00000397102 DNMBPQ6XZF7 1577 aa28.25■■■□□ 2.11
SEC13-206ENST00000397102 CHD1O14646 1710 aa28.21■■■□□ 2.11
SEC13-206ENST00000397102 TARBP1Q13395 1621 aaKnown RBP28.18■■■□□ 2.1
SEC13-206ENST00000397102 CYB5RLQ6IPT4 315 aa28.15■■■□□ 2.1
SEC13-206ENST00000397102 AQRO60306 1485 aaKnown RBP eCLIP28.13■■■□□ 2.091e-10■■■■■ 36.9
SEC13-206ENST00000397102 ARAP1Q96P48 1450 aa28.08■■■□□ 2.09
SEC13-206ENST00000397102 POLA1P09884 1462 aaPredicted RBP28.06■■■□□ 2.08
SEC13-206ENST00000397102 FBLN2P98095 1184 aa28■■■□□ 2.07
SEC13-206ENST00000397102 TRHP20396 242 aaPredicted RBP27.98■■■□□ 2.07
SEC13-206ENST00000397102 RAD54L2Q9Y4B4 1467 aa27.93■■■□□ 2.06
SEC13-206ENST00000397102 WDR97A6NE52 1622 aa27.9■■■□□ 2.06
SEC13-206ENST00000397102 SOGA1O94964 1423 aa27.9■■■□□ 2.06
SEC13-206ENST00000397102 TDRD9Q8NDG6 1382 aaKnown RBP27.88■■■□□ 2.05
SEC13-206ENST00000397102 CLASP1Q7Z460 1538 aa27.87■■■□□ 2.05
SEC13-206ENST00000397102 SNAPC4Q5SXM2 1469 aa27.86■■■□□ 2.05
SEC13-206ENST00000397102 FGD5Q6ZNL6 1462 aa27.82■■■□□ 2.04
SEC13-206ENST00000397102 SYNJ1O43426 1573 aa27.82■■■□□ 2.04
SEC13-206ENST00000397102 MAGI1Q96QZ7 1491 aaPredicted RBP27.79■■■□□ 2.04
SEC13-206ENST00000397102 CHMP7Q8WUX9 453 aaPredicted RBP27.74■■■□□ 2.03
SEC13-206ENST00000397102 GRIN2BQ13224 1484 aa27.73■■■□□ 2.03
SEC13-206ENST00000397102 CUX1P39880 1505 aa27.72■■■□□ 2.03
SEC13-206ENST00000397102 SYNJ2O15056 1496 aa27.7■■■□□ 2.02
SEC13-206ENST00000397102 PBRM1Q86U86 1689 aa27.64■■■□□ 2.02
SEC13-206ENST00000397102 GAPVD1Q14C86 1478 aa27.57■■■□□ 2
SEC13-206ENST00000397102 ABCA5Q8WWZ7 1642 aa27.51■■□□□ 1.99
SEC13-206ENST00000397102 AEBP2Q6ZN18 517 aaPredicted RBP27.5■■□□□ 1.99
SEC13-206ENST00000397102 ABCA10Q8WWZ4 1543 aa27.49■■□□□ 1.99
SEC13-206ENST00000397102 GRIN2AQ12879 1464 aa27.38■■□□□ 1.97
SEC13-206ENST00000397102 ERCC6L2Q5T890 1561 aa27.37■■□□□ 1.97
SEC13-206ENST00000397102 ADAMTS12P58397 1594 aa27.33■■□□□ 1.97
SEC13-206ENST00000397102 CEP170Q5SW79 1584 aa27.31■■□□□ 1.96
SEC13-206ENST00000397102 NUP160Q12769 1436 aa27.31■■□□□ 1.96
SEC13-206ENST00000397102 SHROOM2Q13796 1616 aa27.27■■□□□ 1.96
SEC13-206ENST00000397102 WRNQ14191 1432 aaPredicted RBP eCLIP27.26■■□□□ 1.95
SEC13-206ENST00000397102 BIVM-ERCC5R4GMW8 1640 aa27.21■■□□□ 1.95
SEC13-206ENST00000397102 FHAD1B1AJZ9 1412 aa27.2■■□□□ 1.94
SEC13-206ENST00000397102 TOP2BQ02880 1626 aa27.19■■□□□ 1.94
SEC13-206ENST00000397102 KIF13AQ9H1H9 1805 aa27.15■■□□□ 1.94
SEC13-206ENST00000397102 ERICH3Q5RHP9 1530 aa27.15■■□□□ 1.94
SEC13-206ENST00000397102 PRG4Q92954 1404 aaPredicted RBP27.05■■□□□ 1.92
SEC13-206ENST00000397102 SUPT5HO00267 1087 aaKnown RBP27.02■■□□□ 1.92
SEC13-206ENST00000397102 JPH4Q96JJ6 628 aa26.98■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms