RNA–Protein interactions for RNA: ENST00000397099.1

SEC13-204, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 4

Gene SEC13, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-204ENST00000397099 NISCHQ9Y2I1 1504 aa34.17■■■■□ 3.06
SEC13-204ENST00000397099 CCDC180Q9P1Z9 1646 aa30.58■■■□□ 2.49
SEC13-204ENST00000397099 ABCC9O60706 1549 aa30.28■■■□□ 2.44
SEC13-204ENST00000397099 RB1CC1Q8TDY2 1594 aa28.88■■■□□ 2.21
SEC13-204ENST00000397099 NACADO15069 1562 aa28.79■■■□□ 2.2
SEC13-204ENST00000397099 DCAF8L2P0C7V8 631 aa28.73■■■□□ 2.19
SEC13-204ENST00000397099 MYO15BQ96JP2 1530 aa28.6■■■□□ 2.17
SEC13-204ENST00000397099 ZCCHC6Q5VYS8 1495 aaKnown RBP28.41■■■□□ 2.14
SEC13-204ENST00000397099 DCAF1Q9Y4B6 1507 aa28.36■■■□□ 2.13
SEC13-204ENST00000397099 PABPN1Q86U42 306 aaKnown RBP eCLIP28.25■■■□□ 2.11
SEC13-204ENST00000397099 DNAJC5BQ9UF47 199 aa28.2■■■□□ 2.1
SEC13-204ENST00000397099 UNC13AQ9UPW8 1703 aa28.15■■■□□ 2.1
SEC13-204ENST00000397099 BICRAQ9NZM4 1560 aa27.97■■■□□ 2.07
SEC13-204ENST00000397099 SHROOM4Q9ULL8 1493 aa27.79■■■□□ 2.04
SEC13-204ENST00000397099 SCRIBQ14160 1630 aa27.77■■■□□ 2.04
SEC13-204ENST00000397099 CC2D2AQ9P2K1 1620 aa27.33■■□□□ 1.97
SEC13-204ENST00000397099 EIF4G1Q04637 1599 aaKnown RBP27.31■■□□□ 1.96
SEC13-204ENST00000397099 CECR2Q9BXF3 1484 aa27.25■■□□□ 1.95
SEC13-204ENST00000397099 SMARCA4P51532 1647 aa26.57■■□□□ 1.84
SEC13-204ENST00000397099 BAZ1AQ9NRL2 1556 aaPredicted RBP26.55■■□□□ 1.84
SEC13-204ENST00000397099 NCAPD3P42695 1498 aa26.53■■□□□ 1.84
SEC13-204ENST00000397099 SMARCA2P51531 1590 aa26.5■■□□□ 1.83
SEC13-204ENST00000397099 ATAD2BQ9ULI0 1458 aa26.46■■□□□ 1.83
SEC13-204ENST00000397099 HMGXB3Q12766 1538 aa26.4■■□□□ 1.82
SEC13-204ENST00000397099 PEG3Q9GZU2 1588 aa26.37■■□□□ 1.81
SEC13-204ENST00000397099 MROH2BQ7Z745 1585 aa26.26■■□□□ 1.79
SEC13-204ENST00000397099 BAZ1BQ9UIG0 1483 aaKnown RBP26.25■■□□□ 1.79
SEC13-204ENST00000397099 ERCC6Q03468 1493 aa26.17■■□□□ 1.78
SEC13-204ENST00000397099 NESP48681 1621 aa26.04■■□□□ 1.76
SEC13-204ENST00000397099 CUX2O14529 1486 aa25.99■■□□□ 1.75
SEC13-204ENST00000397099 WIZO95785 1651 aa25.97■■□□□ 1.75
SEC13-204ENST00000397099 LAMC3Q9Y6N6 1575 aa25.9■■□□□ 1.74
SEC13-204ENST00000397099 RSF1Q96T23 1441 aaPredicted RBP25.9■■□□□ 1.74
SEC13-204ENST00000397099 DNAJC5Q9H3Z4 198 aa25.78■■□□□ 1.72
SEC13-204ENST00000397099 TOP2AP11388 1531 aaKnown RBP25.75■■□□□ 1.71
SEC13-204ENST00000397099 PDS5BQ9NTI5 1447 aa25.75■■□□□ 1.71
SEC13-204ENST00000397099 CADPSQ9ULU8 1353 aa25.72■■□□□ 1.71
SEC13-204ENST00000397099 THOC2Q8NI27 1593 aaKnown RBP25.71■■□□□ 1.71
SEC13-204ENST00000397099 KIF21AQ7Z4S6 1674 aa25.69■■□□□ 1.7
SEC13-204ENST00000397099 CFTRP13569 1480 aa25.53■■□□□ 1.68
SEC13-204ENST00000397099 MRC2Q9UBG0 1479 aa25.51■■□□□ 1.67
SEC13-204ENST00000397099 CEP164Q9UPV0 1460 aa25.46■■□□□ 1.67
SEC13-204ENST00000397099 FANCD2Q9BXW9 1451 aa25.44■■□□□ 1.66
SEC13-204ENST00000397099 WDR62O43379 1518 aa25.41■■□□□ 1.66
SEC13-204ENST00000397099 CCDC88BA6NC98 1476 aa25.4■■□□□ 1.66
SEC13-204ENST00000397099 PRDM2Q13029 1718 aa25.39■■□□□ 1.65
SEC13-204ENST00000397099 URB2Q14146 1524 aaKnown RBP25.19■■□□□ 1.62
SEC13-204ENST00000397099 ABCC8Q09428 1581 aa25.1■■□□□ 1.61
SEC13-204ENST00000397099 SUPT5HO00267 1087 aaKnown RBP25■■□□□ 1.59
SEC13-204ENST00000397099 DNMBPQ6XZF7 1577 aa24.97■■□□□ 1.59
SEC13-204ENST00000397099 TOPBP1Q92547 1522 aa24.96■■□□□ 1.59
SEC13-204ENST00000397099 IFT140Q96RY7 1462 aa24.93■■□□□ 1.58
SEC13-204ENST00000397099 OSCARQ8IYS5 282 aa24.88■■□□□ 1.57
SEC13-204ENST00000397099 ZNF608Q9ULD9 1512 aaPredicted RBP24.86■■□□□ 1.57
SEC13-204ENST00000397099 TRIM41Q8WV44 630 aa24.83■■□□□ 1.57
SEC13-204ENST00000397099 EIF4G3O43432 1585 aaKnown RBP24.74■■□□□ 1.55
SEC13-204ENST00000397099 POLA1P09884 1462 aaPredicted RBP24.73■■□□□ 1.55
SEC13-204ENST00000397099 TARBP1Q13395 1621 aaKnown RBP24.72■■□□□ 1.55
SEC13-204ENST00000397099 AQRO60306 1485 aaKnown RBP eCLIP24.68■■□□□ 1.541e-10■■■■■ 36.9
SEC13-204ENST00000397099 WDR97A6NE52 1622 aa24.67■■□□□ 1.54
SEC13-204ENST00000397099 CUX1P39880 1505 aa24.66■■□□□ 1.54
SEC13-204ENST00000397099 SOGA1O94964 1423 aa24.65■■□□□ 1.54
SEC13-204ENST00000397099 RAD54L2Q9Y4B4 1467 aa24.64■■□□□ 1.53
SEC13-204ENST00000397099 FGD5Q6ZNL6 1462 aa24.63■■□□□ 1.53
SEC13-204ENST00000397099 TDRD9Q8NDG6 1382 aaKnown RBP24.57■■□□□ 1.52
SEC13-204ENST00000397099 FBLN2P98095 1184 aa24.56■■□□□ 1.52
SEC13-204ENST00000397099 CHD1O14646 1710 aa24.51■■□□□ 1.51
SEC13-204ENST00000397099 RIMBP3CA6NJZ7 1639 aa24.5■■□□□ 1.51
SEC13-204ENST00000397099 RIMBP3BA6NNM3 1639 aa24.5■■□□□ 1.51
SEC13-204ENST00000397099 RIMBP3Q9UFD9 1639 aa24.5■■□□□ 1.51
SEC13-204ENST00000397099 BIVM-ERCC5R4GMW8 1640 aa24.47■■□□□ 1.51
SEC13-204ENST00000397099 TOP2BQ02880 1626 aa24.46■■□□□ 1.51
SEC13-204ENST00000397099 WRNQ14191 1432 aaPredicted RBP eCLIP24.46■■□□□ 1.51
SEC13-204ENST00000397099 ARHGEF11O15085 1522 aa24.45■■□□□ 1.5
SEC13-204ENST00000397099 SNAPC4Q5SXM2 1469 aa24.45■■□□□ 1.5
SEC13-204ENST00000397099 ABCA10Q8WWZ4 1543 aa24.44■■□□□ 1.5
SEC13-204ENST00000397099 GRIN2BQ13224 1484 aa24.42■■□□□ 1.5
SEC13-204ENST00000397099 MAGI1Q96QZ7 1491 aaPredicted RBP24.41■■□□□ 1.5
SEC13-204ENST00000397099 CHMP7Q8WUX9 453 aaPredicted RBP24.38■■□□□ 1.49
SEC13-204ENST00000397099 GAPVD1Q14C86 1478 aa24.38■■□□□ 1.49
SEC13-204ENST00000397099 SYNJ1O43426 1573 aa24.36■■□□□ 1.49
SEC13-204ENST00000397099 ABCA5Q8WWZ7 1642 aa24.35■■□□□ 1.49
SEC13-204ENST00000397099 PBRM1Q86U86 1689 aa24.34■■□□□ 1.49
SEC13-204ENST00000397099 CYB5RLQ6IPT4 315 aa24.31■■□□□ 1.48
SEC13-204ENST00000397099 SYNJ2O15056 1496 aa24.29■■□□□ 1.48
SEC13-204ENST00000397099 CLASP1Q7Z460 1538 aa24.22■■□□□ 1.47
SEC13-204ENST00000397099 ARAP1Q96P48 1450 aa24.21■■□□□ 1.47
SEC13-204ENST00000397099 ERICH3Q5RHP9 1530 aa24.18■■□□□ 1.46
SEC13-204ENST00000397099 ADAMTS12P58397 1594 aa24.12■■□□□ 1.45
SEC13-204ENST00000397099 FHAD1B1AJZ9 1412 aa24.1■■□□□ 1.45
SEC13-204ENST00000397099 GRIN2AQ12879 1464 aa24.07■■□□□ 1.44
SEC13-204ENST00000397099 TRHP20396 242 aaPredicted RBP24.03■■□□□ 1.44
SEC13-204ENST00000397099 KIF27Q86VH2 1401 aa24.01■■□□□ 1.43
SEC13-204ENST00000397099 NUP160Q12769 1436 aa23.99■■□□□ 1.43
SEC13-204ENST00000397099 CEP170Q5SW79 1584 aa23.96■■□□□ 1.43
SEC13-204ENST00000397099 CUL7Q14999 1698 aa23.94■■□□□ 1.42
SEC13-204ENST00000397099 IGF1RP08069 1367 aa23.88■■□□□ 1.41
SEC13-204ENST00000397099 ERCC6L2Q5T890 1561 aa23.87■■□□□ 1.41
SEC13-204ENST00000397099 SHROOM2Q13796 1616 aa23.85■■□□□ 1.41
SEC13-204ENST00000397099 RUSC2Q8N2Y8 1516 aa23.77■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms