RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 NISCHQ9Y2I1 1504 aa27.63■■■□□ 2.01
LDLR-203ENST00000535915 CCDC180Q9P1Z9 1646 aa23.64■■□□□ 1.37
LDLR-203ENST00000535915 SHROOM4Q9ULL8 1493 aa23.41■■□□□ 1.34
LDLR-203ENST00000535915 ZCCHC6Q5VYS8 1495 aaKnown RBP23.35■■□□□ 1.33
LDLR-203ENST00000535915 SUPT5HO00267 1087 aaKnown RBP22.91■■□□□ 1.26
LDLR-203ENST00000535915 DCAF8L2P0C7V8 631 aa22.89■■□□□ 1.25
LDLR-203ENST00000535915 DCAF1Q9Y4B6 1507 aa22.7■■□□□ 1.22
LDLR-203ENST00000535915 CHIC1Q5VXU3 224 aa22.22■■□□□ 1.15
LDLR-203ENST00000535915 MYO15BQ96JP2 1530 aa22.11■■□□□ 1.13
LDLR-203ENST00000535915 SCRIBQ14160 1630 aa22.07■■□□□ 1.12
LDLR-203ENST00000535915 ABCC9O60706 1549 aa22.04■■□□□ 1.12
LDLR-203ENST00000535915 NACADO15069 1562 aa21.84■■□□□ 1.09
LDLR-203ENST00000535915 RSF1Q96T23 1441 aaPredicted RBP21.79■■□□□ 1.08
LDLR-203ENST00000535915 RB1CC1Q8TDY2 1594 aa21.59■■□□□ 1.05
LDLR-203ENST00000535915 LOC105371045A0A1W2PR82 267 aa21.54■■□□□ 1.04
LDLR-203ENST00000535915 CECR2Q9BXF3 1484 aa21.52■■□□□ 1.04
LDLR-203ENST00000535915 MROH2BQ7Z745 1585 aa21.46■■□□□ 1.03
LDLR-203ENST00000535915 PCGF6Q9BYE7 350 aa21.42■■□□□ 1.02
LDLR-203ENST00000535915 WIZO95785 1651 aa21.38■■□□□ 1.01
LDLR-203ENST00000535915 TRIM41Q8WV44 630 aa21.38■■□□□ 1.01
LDLR-203ENST00000535915 HRCP23327 699 aa21.35■■□□□ 1.01
LDLR-203ENST00000535915 BAZ1AQ9NRL2 1556 aaPredicted RBP21.26■□□□□ 0.99
LDLR-203ENST00000535915 UNC13AQ9UPW8 1703 aa21.25■□□□□ 0.99
LDLR-203ENST00000535915 FAM9AQ8IZU1 332 aaPredicted RBP21.16■□□□□ 0.98
LDLR-203ENST00000535915 SMARCA4P51532 1647 aa21.1■□□□□ 0.97
LDLR-203ENST00000535915 TRIM26Q12899 539 aaPredicted RBP21.07■□□□□ 0.96
LDLR-203ENST00000535915 TOP2AP11388 1531 aaKnown RBP21.04■□□□□ 0.96
LDLR-203ENST00000535915 EIF4G1Q04637 1599 aaKnown RBP21.03■□□□□ 0.96
LDLR-203ENST00000535915 EHMT2Q96KQ7 1210 aa20.97■□□□□ 0.95
LDLR-203ENST00000535915 SMARCA2P51531 1590 aa20.92■□□□□ 0.94
LDLR-203ENST00000535915 CCDC88BA6NC98 1476 aa20.91■□□□□ 0.94
LDLR-203ENST00000535915 BICRAQ9NZM4 1560 aa20.9■□□□□ 0.94
LDLR-203ENST00000535915 PPARGC1BQ86YN6 1023 aaKnown RBP20.89■□□□□ 0.93
LDLR-203ENST00000535915 PABPN1Q86U42 306 aaKnown RBP eCLIP20.86■□□□□ 0.93
LDLR-203ENST00000535915 ABCC8Q09428 1581 aa20.84■□□□□ 0.93
LDLR-203ENST00000535915 PEG3Q9GZU2 1588 aa20.7■□□□□ 0.9
LDLR-203ENST00000535915 ZEB1P37275 1124 aaPredicted RBP20.58■□□□□ 0.89
LDLR-203ENST00000535915 SOGA1O94964 1423 aa20.58■□□□□ 0.88
LDLR-203ENST00000535915 ATAD2BQ9ULI0 1458 aa20.54■□□□□ 0.88
LDLR-203ENST00000535915 EEA1Q15075 1411 aa20.51■□□□□ 0.87
LDLR-203ENST00000535915 BAZ1BQ9UIG0 1483 aaKnown RBP20.51■□□□□ 0.87
LDLR-203ENST00000535915 WRNQ14191 1432 aaPredicted RBP eCLIP20.5■□□□□ 0.87
LDLR-203ENST00000535915 RUSC2Q8N2Y8 1516 aa20.49■□□□□ 0.87
LDLR-203ENST00000535915 CSRNP3Q8WYN3 585 aa20.47■□□□□ 0.87
LDLR-203ENST00000535915 CEP162Q5TB80 1403 aa20.46■□□□□ 0.87
LDLR-203ENST00000535915 TNIKQ9UKE5 1360 aa20.44■□□□□ 0.86
LDLR-203ENST00000535915 SYNJ1O43426 1573 aa20.42■□□□□ 0.86
LDLR-203ENST00000535915 UBTFP17480 764 aaKnown RBP20.39■□□□□ 0.85
LDLR-203ENST00000535915 GOLGA3Q08378 1498 aa20.37■□□□□ 0.85
LDLR-203ENST00000535915 TTBK1Q5TCY1 1321 aaPredicted RBP20.28■□□□□ 0.84
LDLR-203ENST00000535915 KIF21BO75037 1637 aa20.26■□□□□ 0.83
LDLR-203ENST00000535915 CEP164Q9UPV0 1460 aa20.26■□□□□ 0.83
LDLR-203ENST00000535915 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.23■□□□□ 0.83
LDLR-203ENST00000535915 TOP2BQ02880 1626 aa20.2■□□□□ 0.82
LDLR-203ENST00000535915 CCER1Q8TC90 406 aaPredicted RBP20.2■□□□□ 0.82
LDLR-203ENST00000535915 HMGXB3Q12766 1538 aa20.19■□□□□ 0.82
LDLR-203ENST00000535915 PELP1Q8IZL8 1130 aaKnown RBP20.18■□□□□ 0.82
LDLR-203ENST00000535915 NCAPD3P42695 1498 aa20.16■□□□□ 0.82
LDLR-203ENST00000535915 BIVM-ERCC5R4GMW8 1640 aa20.15■□□□□ 0.82
LDLR-203ENST00000535915 CLIP1P30622 1438 aa20.11■□□□□ 0.81
LDLR-203ENST00000535915 RAPGEF2Q9Y4G8 1499 aa20.1■□□□□ 0.81
LDLR-203ENST00000535915 VPS8Q8N3P4 1428 aa20.01■□□□□ 0.79
LDLR-203ENST00000535915 CUX1P39880 1505 aa19.99■□□□□ 0.79
LDLR-203ENST00000535915 RANGAP1P46060 587 aaPredicted RBP19.98■□□□□ 0.79
LDLR-203ENST00000535915 CFTRP13569 1480 aa19.97■□□□□ 0.79
LDLR-203ENST00000535915 ERICH3Q5RHP9 1530 aa19.95■□□□□ 0.78
LDLR-203ENST00000535915 PRDM2Q13029 1718 aa19.95■□□□□ 0.78
LDLR-203ENST00000535915 APLP2Q06481 763 aa19.94■□□□□ 0.78
LDLR-203ENST00000535915 PRXQ9BXM0 1461 aa19.93■□□□□ 0.78
LDLR-203ENST00000535915 KIF27Q86VH2 1401 aa19.88■□□□□ 0.77
LDLR-203ENST00000535915 HNRNPUL2Q1KMD3 747 aaKnown RBP19.84■□□□□ 0.77
LDLR-203ENST00000535915 ARAP1Q96P48 1450 aa19.79■□□□□ 0.76
LDLR-203ENST00000535915 CADPSQ9ULU8 1353 aa19.76■□□□□ 0.75
LDLR-203ENST00000535915 CC2D2AQ9P2K1 1620 aa19.75■□□□□ 0.75
LDLR-203ENST00000535915 DIEXFQ68CQ4 756 aaKnown RBP19.72■□□□□ 0.75
LDLR-203ENST00000535915 CUX2O14529 1486 aa19.71■□□□□ 0.75
LDLR-203ENST00000535915 FGD5Q6ZNL6 1462 aa19.66■□□□□ 0.74
LDLR-203ENST00000535915 ARHGAP35Q9NRY4 1499 aa19.65■□□□□ 0.74
LDLR-203ENST00000535915 IGF1RP08069 1367 aa19.64■□□□□ 0.73
LDLR-203ENST00000535915 KANK4Q5T7N3 995 aaPredicted RBP19.63■□□□□ 0.73
LDLR-203ENST00000535915 ZNF316A6NFI3 1004 aaPredicted RBP19.61■□□□□ 0.73
LDLR-203ENST00000535915 FANCD2Q9BXW9 1451 aa19.59■□□□□ 0.73
LDLR-203ENST00000535915 CARMIL1Q5VZK9 1371 aa19.57■□□□□ 0.72
LDLR-203ENST00000535915 SCAF1Q9H7N4 1312 aaKnown RBP19.57■□□□□ 0.72
LDLR-203ENST00000535915 RRBP1Q9P2E9 1410 aaKnown RBP19.52■□□□□ 0.72
LDLR-203ENST00000535915 DNMBPQ6XZF7 1577 aa19.51■□□□□ 0.71
LDLR-203ENST00000535915 MYT1Q01538 1121 aa19.48■□□□□ 0.71
LDLR-203ENST00000535915 NESP48681 1621 aa19.47■□□□□ 0.71
LDLR-203ENST00000535915 ACIN1Q9UKV3 1341 aaKnown RBP19.46■□□□□ 0.71
LDLR-203ENST00000535915 TOPBP1Q92547 1522 aa19.46■□□□□ 0.71
LDLR-203ENST00000535915 RAD54L2Q9Y4B4 1467 aa19.45■□□□□ 0.7
LDLR-203ENST00000535915 TIAM1Q13009 1591 aa19.45■□□□□ 0.7
LDLR-203ENST00000535915 DHX57Q6P158 1386 aaKnown RBP19.45■□□□□ 0.7
LDLR-203ENST00000535915 CCNB3Q8WWL7 1395 aa19.45■□□□□ 0.7
LDLR-203ENST00000535915 CLSPNQ9HAW4 1339 aa19.44■□□□□ 0.7
LDLR-203ENST00000535915 POLA1P09884 1462 aaPredicted RBP19.44■□□□□ 0.7
LDLR-203ENST00000535915 ABCA10Q8WWZ4 1543 aa19.43■□□□□ 0.7
LDLR-203ENST00000535915 NEUROD1Q13562 356 aa19.43■□□□□ 0.7
LDLR-203ENST00000535915 CENPBP07199 599 aaPredicted RBP19.42■□□□□ 0.7
LDLR-203ENST00000535915 MAP3K1Q13233 1512 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms