RNA–Protein interactions for RNA: ENST00000539782.1

LDHB-208, Transcript of lactate dehydrogenase B, humanhuman

TSL 3

Gene LDHB, Length 487 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDHB-208ENST00000539782 NISCHQ9Y2I1 1504 aa18.07■□□□□ 0.48
LDHB-208ENST00000539782 ABCC9O60706 1549 aa16.41■□□□□ 0.22
LDHB-208ENST00000539782 CCDC180Q9P1Z9 1646 aa16.28■□□□□ 0.2
LDHB-208ENST00000539782 RB1CC1Q8TDY2 1594 aa15.58■□□□□ 0.09
LDHB-208ENST00000539782 NACADO15069 1562 aa15.42■□□□□ 0.06
LDHB-208ENST00000539782 DNAJC5BQ9UF47 199 aa15.41■□□□□ 0.06
LDHB-208ENST00000539782 DCAF8L2P0C7V8 631 aa15.37■□□□□ 0.05
LDHB-208ENST00000539782 PABPN1Q86U42 306 aaKnown RBP eCLIP15.25■□□□□ 0.03
LDHB-208ENST00000539782 UNC13AQ9UPW8 1703 aa15.14■□□□□ 0.01
LDHB-208ENST00000539782 MYO15BQ96JP2 1530 aa15.13■□□□□ 0.01
LDHB-208ENST00000539782 BICRAQ9NZM4 1560 aa15.06■□□□□ 0
LDHB-208ENST00000539782 ZCCHC6Q5VYS8 1495 aaKnown RBP14.95□□□□□ -0.02
LDHB-208ENST00000539782 SHROOM4Q9ULL8 1493 aa14.91□□□□□ -0.02
LDHB-208ENST00000539782 DCAF1Q9Y4B6 1507 aa14.91□□□□□ -0.02
LDHB-208ENST00000539782 SCRIBQ14160 1630 aa14.85□□□□□ -0.03
LDHB-208ENST00000539782 CECR2Q9BXF3 1484 aa14.8□□□□□ -0.04
LDHB-208ENST00000539782 CC2D2AQ9P2K1 1620 aa14.8□□□□□ -0.04
LDHB-208ENST00000539782 EIF4G1Q04637 1599 aaKnown RBP14.74□□□□□ -0.05
LDHB-208ENST00000539782 DNAJC5Q9H3Z4 198 aa14.28□□□□□ -0.12
LDHB-208ENST00000539782 ERCC6Q03468 1493 aa14.23□□□□□ -0.13
LDHB-208ENST00000539782 NCAPD3P42695 1498 aa14.21□□□□□ -0.13
LDHB-208ENST00000539782 CUX2O14529 1486 aa14.19□□□□□ -0.14
LDHB-208ENST00000539782 ATAD2BQ9ULI0 1458 aa14.16□□□□□ -0.14
LDHB-208ENST00000539782 SMARCA2P51531 1590 aa14.15□□□□□ -0.14
LDHB-208ENST00000539782 SMARCA4P51532 1647 aa14.13□□□□□ -0.15
LDHB-208ENST00000539782 HMGXB3Q12766 1538 aa14.13□□□□□ -0.15
LDHB-208ENST00000539782 BAZ1BQ9UIG0 1483 aaKnown RBP14.06□□□□□ -0.16
LDHB-208ENST00000539782 BAZ1AQ9NRL2 1556 aaPredicted RBP14.06□□□□□ -0.16
LDHB-208ENST00000539782 NESP48681 1621 aa14.04□□□□□ -0.16
LDHB-208ENST00000539782 PEG3Q9GZU2 1588 aa13.96□□□□□ -0.17
LDHB-208ENST00000539782 LAMC3Q9Y6N6 1575 aa13.95□□□□□ -0.18
LDHB-208ENST00000539782 THOC2Q8NI27 1593 aaKnown RBP13.92□□□□□ -0.18
LDHB-208ENST00000539782 MROH2BQ7Z745 1585 aa13.91□□□□□ -0.18
LDHB-208ENST00000539782 PDS5BQ9NTI5 1447 aa13.89□□□□□ -0.19
LDHB-208ENST00000539782 KIF21AQ7Z4S6 1674 aa13.86□□□□□ -0.19
LDHB-208ENST00000539782 CADPSQ9ULU8 1353 aa13.8□□□□□ -0.2
LDHB-208ENST00000539782 MRC2Q9UBG0 1479 aa13.77□□□□□ -0.21
LDHB-208ENST00000539782 WIZO95785 1651 aa13.74□□□□□ -0.21
LDHB-208ENST00000539782 WDR62O43379 1518 aa13.71□□□□□ -0.21
LDHB-208ENST00000539782 CEP164Q9UPV0 1460 aa13.7□□□□□ -0.22
LDHB-208ENST00000539782 TRIM41Q8WV44 630 aa13.69□□□□□ -0.22
LDHB-208ENST00000539782 FANCD2Q9BXW9 1451 aa13.66□□□□□ -0.22
LDHB-208ENST00000539782 CFTRP13569 1480 aa13.6□□□□□ -0.23
LDHB-208ENST00000539782 TOP2AP11388 1531 aaKnown RBP13.59□□□□□ -0.23
LDHB-208ENST00000539782 RSF1Q96T23 1441 aaPredicted RBP13.58□□□□□ -0.24
LDHB-208ENST00000539782 OSCARQ8IYS5 282 aa13.53□□□□□ -0.24
LDHB-208ENST00000539782 URB2Q14146 1524 aaKnown RBP13.53□□□□□ -0.24
LDHB-208ENST00000539782 PRDM2Q13029 1718 aa13.46□□□□□ -0.25
LDHB-208ENST00000539782 IFT140Q96RY7 1462 aa13.42□□□□□ -0.26
LDHB-208ENST00000539782 CCDC88BA6NC98 1476 aa13.41□□□□□ -0.26
LDHB-208ENST00000539782 ZNF608Q9ULD9 1512 aaPredicted RBP13.38□□□□□ -0.27
LDHB-208ENST00000539782 TOPBP1Q92547 1522 aa13.37□□□□□ -0.27
LDHB-208ENST00000539782 ABCC8Q09428 1581 aa13.37□□□□□ -0.27
LDHB-208ENST00000539782 RIMBP3CA6NJZ7 1639 aa13.35□□□□□ -0.27
LDHB-208ENST00000539782 RIMBP3BA6NNM3 1639 aa13.35□□□□□ -0.27
LDHB-208ENST00000539782 RIMBP3Q9UFD9 1639 aa13.35□□□□□ -0.27
LDHB-208ENST00000539782 EIF4G3O43432 1585 aaKnown RBP13.32□□□□□ -0.28
LDHB-208ENST00000539782 DNMBPQ6XZF7 1577 aa13.32□□□□□ -0.28
LDHB-208ENST00000539782 ARHGEF11O15085 1522 aa13.3□□□□□ -0.28
LDHB-208ENST00000539782 AQRO60306 1485 aaKnown RBP eCLIP13.25□□□□□ -0.29
LDHB-208ENST00000539782 FBLN2P98095 1184 aa13.25□□□□□ -0.29
LDHB-208ENST00000539782 CHD1O14646 1710 aa13.24□□□□□ -0.29
LDHB-208ENST00000539782 TARBP1Q13395 1621 aaKnown RBP13.24□□□□□ -0.29
LDHB-208ENST00000539782 POLA1P09884 1462 aaPredicted RBP13.23□□□□□ -0.29
LDHB-208ENST00000539782 CYB5RLQ6IPT4 315 aa13.22□□□□□ -0.29
LDHB-208ENST00000539782 AEBP2Q6ZN18 517 aaPredicted RBP13.22□□□□□ -0.29
LDHB-208ENST00000539782 RAD54L2Q9Y4B4 1467 aa13.18□□□□□ -0.3
LDHB-208ENST00000539782 SOGA1O94964 1423 aa13.17□□□□□ -0.3
LDHB-208ENST00000539782 TRHP20396 242 aaPredicted RBP13.17□□□□□ -0.3
LDHB-208ENST00000539782 TDRD9Q8NDG6 1382 aaKnown RBP13.16□□□□□ -0.3
LDHB-208ENST00000539782 ARAP1Q96P48 1450 aa13.16□□□□□ -0.3
LDHB-208ENST00000539782 SNAPC4Q5SXM2 1469 aa13.14□□□□□ -0.31
LDHB-208ENST00000539782 FGD5Q6ZNL6 1462 aa13.14□□□□□ -0.31
LDHB-208ENST00000539782 WDR97A6NE52 1622 aa13.13□□□□□ -0.31
LDHB-208ENST00000539782 CHMP7Q8WUX9 453 aaPredicted RBP13.12□□□□□ -0.31
LDHB-208ENST00000539782 SYNJ1O43426 1573 aa13.11□□□□□ -0.31
LDHB-208ENST00000539782 MAGI1Q96QZ7 1491 aaPredicted RBP13.1□□□□□ -0.31
LDHB-208ENST00000539782 GRIN2BQ13224 1484 aa13.09□□□□□ -0.31
LDHB-208ENST00000539782 CUX1P39880 1505 aa13.08□□□□□ -0.31
LDHB-208ENST00000539782 CHIC1Q5VXU3 224 aa13.08□□□□□ -0.32
LDHB-208ENST00000539782 CLASP1Q7Z460 1538 aa13.07□□□□□ -0.32
LDHB-208ENST00000539782 SYNJ2O15056 1496 aa13.05□□□□□ -0.32
LDHB-208ENST00000539782 GAPVD1Q14C86 1478 aa13.02□□□□□ -0.33
LDHB-208ENST00000539782 PBRM1Q86U86 1689 aa13.02□□□□□ -0.33
LDHB-208ENST00000539782 ABCA10Q8WWZ4 1543 aa12.97□□□□□ -0.33
LDHB-208ENST00000539782 ABCA5Q8WWZ7 1642 aa12.95□□□□□ -0.34
LDHB-208ENST00000539782 SUPT5HO00267 1087 aaKnown RBP12.95□□□□□ -0.34
LDHB-208ENST00000539782 WRNQ14191 1432 aaPredicted RBP eCLIP12.92□□□□□ -0.34
LDHB-208ENST00000539782 GRIN2AQ12879 1464 aa12.91□□□□□ -0.34
LDHB-208ENST00000539782 ADAMTS12P58397 1594 aa12.89□□□□□ -0.35
LDHB-208ENST00000539782 TOP2BQ02880 1626 aa12.85□□□□□ -0.35
LDHB-208ENST00000539782 BIVM-ERCC5R4GMW8 1640 aa12.85□□□□□ -0.35
LDHB-208ENST00000539782 FHAD1B1AJZ9 1412 aa12.85□□□□□ -0.35
LDHB-208ENST00000539782 NUP160Q12769 1436 aa12.85□□□□□ -0.35
LDHB-208ENST00000539782 CEP170Q5SW79 1584 aa12.85□□□□□ -0.35
LDHB-208ENST00000539782 ERCC6L2Q5T890 1561 aa12.84□□□□□ -0.35
LDHB-208ENST00000539782 ERICH3Q5RHP9 1530 aa12.82□□□□□ -0.36
LDHB-208ENST00000539782 SHROOM2Q13796 1616 aa12.8□□□□□ -0.36
LDHB-208ENST00000539782 PRG4Q92954 1404 aaPredicted RBP12.77□□□□□ -0.37
LDHB-208ENST00000539782 NPM1P06748 294 aaKnown RBP eCLIP12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms