RNA–Protein interactions for RNA: ENST00000342690.4

RBM38-201, Transcript of RNA binding motif protein 38, humanhuman

TSL 3

Gene RBM38, Length 852 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM38-201ENST00000342690 NISCHQ9Y2I1 1504 aa52.75■■■■■ 6.03
RBM38-201ENST00000342690 CCDC180Q9P1Z9 1646 aa46.76■■■■■ 5.08
RBM38-201ENST00000342690 ABCC9O60706 1549 aa45.4■■■■■ 4.86
RBM38-201ENST00000342690 ZCCHC6Q5VYS8 1495 aaKnown RBP44.04■■■■■ 4.64
RBM38-201ENST00000342690 DCAF8L2P0C7V8 631 aa43.85■■■■■ 4.61
RBM38-201ENST00000342690 NACADO15069 1562 aa43.84■■■■■ 4.61
RBM38-201ENST00000342690 RB1CC1Q8TDY2 1594 aa43.82■■■■■ 4.61
RBM38-201ENST00000342690 MYO15BQ96JP2 1530 aa43.69■■■■■ 4.59
RBM38-201ENST00000342690 DCAF1Q9Y4B6 1507 aa43.65■■■■■ 4.58
RBM38-201ENST00000342690 UNC13AQ9UPW8 1703 aa42.9■■■■■ 4.46
RBM38-201ENST00000342690 SCRIBQ14160 1630 aa42.71■■■■■ 4.43
RBM38-201ENST00000342690 BICRAQ9NZM4 1560 aa42.52■■■■■ 4.4
RBM38-201ENST00000342690 PABPN1Q86U42 306 aaKnown RBP eCLIP42.46■■■■■ 4.39
RBM38-201ENST00000342690 SHROOM4Q9ULL8 1493 aa42.05■■■■■ 4.32
RBM38-201ENST00000342690 EIF4G1Q04637 1599 aaKnown RBP41.35■■■■■ 4.21
RBM38-201ENST00000342690 DNAJC5BQ9UF47 199 aa41.33■■■■■ 4.21
RBM38-201ENST00000342690 CC2D2AQ9P2K1 1620 aa41.1■■■■■ 4.17
RBM38-201ENST00000342690 CECR2Q9BXF3 1484 aa41.07■■■■■ 4.16
RBM38-201ENST00000342690 SMARCA4P51532 1647 aa40.88■■■■■ 4.13
RBM38-201ENST00000342690 BAZ1AQ9NRL2 1556 aaPredicted RBP40.86■■■■■ 4.13
RBM38-201ENST00000342690 MROH2BQ7Z745 1585 aa40.68■■■■■ 4.1
RBM38-201ENST00000342690 ATAD2BQ9ULI0 1458 aa40.54■■■■■ 4.08
RBM38-201ENST00000342690 SMARCA2P51531 1590 aa40.5■■■■■ 4.07
RBM38-201ENST00000342690 PEG3Q9GZU2 1588 aa40.46■■■■■ 4.07
RBM38-201ENST00000342690 NCAPD3P42695 1498 aa40.45■■■■■ 4.07
RBM38-201ENST00000342690 RSF1Q96T23 1441 aaPredicted RBP40.32■■■■■ 4.04
RBM38-201ENST00000342690 HMGXB3Q12766 1538 aa40.32■■■■■ 4.04
RBM38-201ENST00000342690 WIZO95785 1651 aa40.27■■■■■ 4.04
RBM38-201ENST00000342690 BAZ1BQ9UIG0 1483 aaKnown RBP40.22■■■■■ 4.03
RBM38-201ENST00000342690 TOP2AP11388 1531 aaKnown RBP39.86■■■■□ 3.97
RBM38-201ENST00000342690 SUPT5HO00267 1087 aaKnown RBP39.52■■■■□ 3.92
RBM38-201ENST00000342690 NESP48681 1621 aa39.41■■■■□ 3.9
RBM38-201ENST00000342690 CCDC88BA6NC98 1476 aa39.37■■■■□ 3.89
RBM38-201ENST00000342690 LAMC3Q9Y6N6 1575 aa39.34■■■■□ 3.89
RBM38-201ENST00000342690 CADPSQ9ULU8 1353 aa39.28■■■■□ 3.88
RBM38-201ENST00000342690 CFTRP13569 1480 aa39.13■■■■□ 3.85
RBM38-201ENST00000342690 ERCC6Q03468 1493 aa39.08■■■■□ 3.85
RBM38-201ENST00000342690 PDS5BQ9NTI5 1447 aa39.02■■■■□ 3.84
RBM38-201ENST00000342690 KIF21AQ7Z4S6 1674 aa38.98■■■■□ 3.83
RBM38-201ENST00000342690 PRDM2Q13029 1718 aa38.93■■■■□ 3.82
RBM38-201ENST00000342690 FANCD2Q9BXW9 1451 aa38.86■■■■□ 3.81
RBM38-201ENST00000342690 CEP164Q9UPV0 1460 aa38.77■■■■□ 3.8
RBM38-201ENST00000342690 THOC2Q8NI27 1593 aaKnown RBP38.77■■■■□ 3.8
RBM38-201ENST00000342690 MRC2Q9UBG0 1479 aa38.65■■■■□ 3.78
RBM38-201ENST00000342690 CUX2O14529 1486 aa38.54■■■■□ 3.76
RBM38-201ENST00000342690 WDR62O43379 1518 aa38.53■■■■□ 3.76
RBM38-201ENST00000342690 URB2Q14146 1524 aaKnown RBP38.47■■■■□ 3.75
RBM38-201ENST00000342690 TOPBP1Q92547 1522 aa38.28■■■■□ 3.72
RBM38-201ENST00000342690 DNMBPQ6XZF7 1577 aa38.27■■■■□ 3.72
RBM38-201ENST00000342690 ABCC8Q09428 1581 aa38.25■■■■□ 3.71
RBM38-201ENST00000342690 CUX1P39880 1505 aa38.14■■■■□ 3.7
RBM38-201ENST00000342690 WRNQ14191 1432 aaPredicted RBP eCLIP37.99■■■■□ 3.67
RBM38-201ENST00000342690 POLA1P09884 1462 aaPredicted RBP37.98■■■■□ 3.67
RBM38-201ENST00000342690 FGD5Q6ZNL6 1462 aa37.95■■■■□ 3.67
RBM38-201ENST00000342690 IFT140Q96RY7 1462 aa37.94■■■■□ 3.66
RBM38-201ENST00000342690 SYNJ1O43426 1573 aa37.93■■■■□ 3.66
RBM38-201ENST00000342690 BIVM-ERCC5R4GMW8 1640 aa37.91■■■■□ 3.66
RBM38-201ENST00000342690 TOP2BQ02880 1626 aa37.9■■■■□ 3.66
RBM38-201ENST00000342690 TARBP1Q13395 1621 aaKnown RBP37.85■■■■□ 3.65
RBM38-201ENST00000342690 RAD54L2Q9Y4B4 1467 aa37.83■■■■□ 3.65
RBM38-201ENST00000342690 SOGA1O94964 1423 aa37.79■■■■□ 3.64
RBM38-201ENST00000342690 ZNF608Q9ULD9 1512 aaPredicted RBP37.76■■■■□ 3.63
RBM38-201ENST00000342690 WDR97A6NE52 1622 aa37.67■■■■□ 3.62
RBM38-201ENST00000342690 EIF4G3O43432 1585 aaKnown RBP37.65■■■■□ 3.62
RBM38-201ENST00000342690 ABCA10Q8WWZ4 1543 aa37.59■■■■□ 3.61
RBM38-201ENST00000342690 AQRO60306 1485 aaKnown RBP eCLIP37.58■■■■□ 3.612e-9■■■■■ 29.3
RBM38-201ENST00000342690 TDRD9Q8NDG6 1382 aaKnown RBP37.55■■■■□ 3.6
RBM38-201ENST00000342690 ABCA5Q8WWZ7 1642 aa37.44■■■■□ 3.58
RBM38-201ENST00000342690 GAPVD1Q14C86 1478 aa37.39■■■■□ 3.58
RBM38-201ENST00000342690 PBRM1Q86U86 1689 aa37.34■■■■□ 3.57
RBM38-201ENST00000342690 GRIN2BQ13224 1484 aa37.33■■■■□ 3.57
RBM38-201ENST00000342690 TRIM41Q8WV44 630 aa37.28■■■■□ 3.56
RBM38-201ENST00000342690 SNAPC4Q5SXM2 1469 aa37.26■■■■□ 3.56
RBM38-201ENST00000342690 MAGI1Q96QZ7 1491 aaPredicted RBP37.2■■■■□ 3.54
RBM38-201ENST00000342690 KIF27Q86VH2 1401 aa37.16■■■■□ 3.54
RBM38-201ENST00000342690 ERICH3Q5RHP9 1530 aa37.14■■■■□ 3.54
RBM38-201ENST00000342690 CHD1O14646 1710 aa37.12■■■■□ 3.53
RBM38-201ENST00000342690 CHIC1Q5VXU3 224 aa37.1■■■■□ 3.53
RBM38-201ENST00000342690 ADAMTS12P58397 1594 aa37.07■■■■□ 3.52
RBM38-201ENST00000342690 SYNJ2O15056 1496 aa37.04■■■■□ 3.52
RBM38-201ENST00000342690 FBLN2P98095 1184 aa37■■■■□ 3.51
RBM38-201ENST00000342690 RUSC2Q8N2Y8 1516 aa36.98■■■■□ 3.51
RBM38-201ENST00000342690 FHAD1B1AJZ9 1412 aa36.96■■■■□ 3.51
RBM38-201ENST00000342690 IGF1RP08069 1367 aa36.96■■■■□ 3.51
RBM38-201ENST00000342690 OSCARQ8IYS5 282 aa36.95■■■■□ 3.51
RBM38-201ENST00000342690 CHMP7Q8WUX9 453 aaPredicted RBP36.95■■■■□ 3.51
RBM38-201ENST00000342690 DNAJC5Q9H3Z4 198 aa36.9■■■■□ 3.5
RBM38-201ENST00000342690 CUL7Q14999 1698 aa36.89■■■■□ 3.5
RBM38-201ENST00000342690 GRIN2AQ12879 1464 aa36.87■■■■□ 3.49
RBM38-201ENST00000342690 CARMIL1Q5VZK9 1371 aa36.76■■■■□ 3.47
RBM38-201ENST00000342690 CLASP1Q7Z460 1538 aa36.71■■■■□ 3.47
RBM38-201ENST00000342690 CEP170Q5SW79 1584 aa36.7■■■■□ 3.47
RBM38-201ENST00000342690 NUP160Q12769 1436 aa36.68■■■■□ 3.46
RBM38-201ENST00000342690 EEA1Q15075 1411 aa36.68■■■■□ 3.46
RBM38-201ENST00000342690 RAPGEF2Q9Y4G8 1499 aa36.59■■■■□ 3.45
RBM38-201ENST00000342690 CSRNP3Q8WYN3 585 aa36.56■■■■□ 3.44
RBM38-201ENST00000342690 PRXQ9BXM0 1461 aa36.56■■■■□ 3.44
RBM38-201ENST00000342690 FAM9AQ8IZU1 332 aaPredicted RBP36.54■■■■□ 3.44
RBM38-201ENST00000342690 ARHGEF11O15085 1522 aa36.44■■■■□ 3.42
RBM38-201ENST00000342690 RIMBP3CA6NJZ7 1639 aa36.42■■■■□ 3.42
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms