RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 NISCHQ9Y2I1 1504 aa26.55■■□□□ 1.84
LDLR-207ENST00000558013 SHROOM4Q9ULL8 1493 aa23.02■■□□□ 1.28
LDLR-207ENST00000558013 SUPT5HO00267 1087 aaKnown RBP22.58■■□□□ 1.21
LDLR-207ENST00000558013 ZCCHC6Q5VYS8 1495 aaKnown RBP22.43■■□□□ 1.18
LDLR-207ENST00000558013 DCAF8L2P0C7V8 631 aa22.38■■□□□ 1.17
LDLR-207ENST00000558013 CCDC180Q9P1Z9 1646 aa22.33■■□□□ 1.17
LDLR-207ENST00000558013 CHIC1Q5VXU3 224 aa21.85■■□□□ 1.09
LDLR-207ENST00000558013 MYO15BQ96JP2 1530 aa21.81■■□□□ 1.08
LDLR-207ENST00000558013 DCAF1Q9Y4B6 1507 aa21.6■■□□□ 1.05
LDLR-207ENST00000558013 LOC105371045A0A1W2PR82 267 aa21.37■■□□□ 1.01
LDLR-207ENST00000558013 PCGF6Q9BYE7 350 aa21.32■■□□□ 1
LDLR-207ENST00000558013 SCRIBQ14160 1630 aa21.23■□□□□ 0.99
LDLR-207ENST00000558013 HRCP23327 699 aa21.21■□□□□ 0.99
LDLR-207ENST00000558013 ABCC9O60706 1549 aa21.14■□□□□ 0.98
LDLR-207ENST00000558013 RSF1Q96T23 1441 aaPredicted RBP21.11■□□□□ 0.97
LDLR-207ENST00000558013 PPARGC1BQ86YN6 1023 aaKnown RBP21■□□□□ 0.95
LDLR-207ENST00000558013 FAM9AQ8IZU1 332 aaPredicted RBP20.92■□□□□ 0.94
LDLR-207ENST00000558013 TRIM41Q8WV44 630 aa20.9■□□□□ 0.94
LDLR-207ENST00000558013 RB1CC1Q8TDY2 1594 aa20.9■□□□□ 0.94
LDLR-207ENST00000558013 EHMT2Q96KQ7 1210 aa20.89■□□□□ 0.93
LDLR-207ENST00000558013 CECR2Q9BXF3 1484 aa20.87■□□□□ 0.93
LDLR-207ENST00000558013 MROH2BQ7Z745 1585 aa20.74■□□□□ 0.91
LDLR-207ENST00000558013 TRIM26Q12899 539 aaPredicted RBP20.73■□□□□ 0.91
LDLR-207ENST00000558013 NACADO15069 1562 aa20.72■□□□□ 0.91
LDLR-207ENST00000558013 WIZO95785 1651 aa20.61■□□□□ 0.89
LDLR-207ENST00000558013 BAZ1AQ9NRL2 1556 aaPredicted RBP20.34■□□□□ 0.85
LDLR-207ENST00000558013 PABPN1Q86U42 306 aaKnown RBP eCLIP20.27■□□□□ 0.83
LDLR-207ENST00000558013 ABCC8Q09428 1581 aa20.24■□□□□ 0.83
LDLR-207ENST00000558013 EIF4G1Q04637 1599 aaKnown RBP20.23■□□□□ 0.83
LDLR-207ENST00000558013 CCDC88BA6NC98 1476 aa20.22■□□□□ 0.83
LDLR-207ENST00000558013 SMARCA4P51532 1647 aa20.18■□□□□ 0.82
LDLR-207ENST00000558013 TTBK1Q5TCY1 1321 aaPredicted RBP20.18■□□□□ 0.82
LDLR-207ENST00000558013 TOP2AP11388 1531 aaKnown RBP20.16■□□□□ 0.82
LDLR-207ENST00000558013 UNC13AQ9UPW8 1703 aa20.15■□□□□ 0.82
LDLR-207ENST00000558013 ZEB1P37275 1124 aaPredicted RBP20.15■□□□□ 0.82
LDLR-207ENST00000558013 SMARCA2P51531 1590 aa20.11■□□□□ 0.81
LDLR-207ENST00000558013 SOGA1O94964 1423 aa20.09■□□□□ 0.81
LDLR-207ENST00000558013 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.09■□□□□ 0.81
LDLR-207ENST00000558013 RUSC2Q8N2Y8 1516 aa20.02■□□□□ 0.8
LDLR-207ENST00000558013 BICRAQ9NZM4 1560 aa19.95■□□□□ 0.78
LDLR-207ENST00000558013 UBTFP17480 764 aaKnown RBP19.94■□□□□ 0.78
LDLR-207ENST00000558013 CEP162Q5TB80 1403 aa19.94■□□□□ 0.78
LDLR-207ENST00000558013 CCER1Q8TC90 406 aaPredicted RBP19.93■□□□□ 0.78
LDLR-207ENST00000558013 CSRNP3Q8WYN3 585 aa19.93■□□□□ 0.78
LDLR-207ENST00000558013 TNIKQ9UKE5 1360 aa19.83■□□□□ 0.77
LDLR-207ENST00000558013 WRNQ14191 1432 aaPredicted RBP eCLIP19.8■□□□□ 0.76
LDLR-207ENST00000558013 RANGAP1P46060 587 aaPredicted RBP19.74■□□□□ 0.75
LDLR-207ENST00000558013 SYNJ1O43426 1573 aa19.71■□□□□ 0.75
LDLR-207ENST00000558013 ATAD2BQ9ULI0 1458 aa19.71■□□□□ 0.75
LDLR-207ENST00000558013 EEA1Q15075 1411 aa19.71■□□□□ 0.75
LDLR-207ENST00000558013 PEG3Q9GZU2 1588 aa19.69■□□□□ 0.74
LDLR-207ENST00000558013 GOLGA3Q08378 1498 aa19.69■□□□□ 0.74
LDLR-207ENST00000558013 SCAF1Q9H7N4 1312 aaKnown RBP19.66■□□□□ 0.74
LDLR-207ENST00000558013 BAZ1BQ9UIG0 1483 aaKnown RBP19.65■□□□□ 0.74
LDLR-207ENST00000558013 HNRNPUL2Q1KMD3 747 aaKnown RBP19.59■□□□□ 0.73
LDLR-207ENST00000558013 CEP164Q9UPV0 1460 aa19.56■□□□□ 0.72
LDLR-207ENST00000558013 RAPGEF2Q9Y4G8 1499 aa19.55■□□□□ 0.72
LDLR-207ENST00000558013 CLIP1P30622 1438 aa19.55■□□□□ 0.72
LDLR-207ENST00000558013 DIEXFQ68CQ4 756 aaKnown RBP19.54■□□□□ 0.72
LDLR-207ENST00000558013 KIF21BO75037 1637 aa19.46■□□□□ 0.71
LDLR-207ENST00000558013 NEUROD1Q13562 356 aa19.45■□□□□ 0.7
LDLR-207ENST00000558013 VPS8Q8N3P4 1428 aa19.41■□□□□ 0.7
LDLR-207ENST00000558013 APLP2Q06481 763 aa19.4■□□□□ 0.7
LDLR-207ENST00000558013 ACIN1Q9UKV3 1341 aaKnown RBP19.37■□□□□ 0.69
LDLR-207ENST00000558013 TOP2BQ02880 1626 aa19.36■□□□□ 0.69
LDLR-207ENST00000558013 ZNF316A6NFI3 1004 aaPredicted RBP19.34■□□□□ 0.69
LDLR-207ENST00000558013 KANK4Q5T7N3 995 aaPredicted RBP19.29■□□□□ 0.68
LDLR-207ENST00000558013 CUX1P39880 1505 aa19.27■□□□□ 0.68
LDLR-207ENST00000558013 NCAPD3P42695 1498 aa19.26■□□□□ 0.67
LDLR-207ENST00000558013 PRXQ9BXM0 1461 aa19.25■□□□□ 0.67
LDLR-207ENST00000558013 BIVM-ERCC5R4GMW8 1640 aa19.24■□□□□ 0.67
LDLR-207ENST00000558013 YTHDC1Q96MU7 727 aaKnown RBP19.23■□□□□ 0.67
LDLR-207ENST00000558013 GTF3C3Q9Y5Q9 886 aa19.23■□□□□ 0.67
LDLR-207ENST00000558013 ARAP1Q96P48 1450 aa19.21■□□□□ 0.67
LDLR-207ENST00000558013 MIER1Q8N108 512 aa19.19■□□□□ 0.66
LDLR-207ENST00000558013 HMGXB3Q12766 1538 aa19.17■□□□□ 0.66
LDLR-207ENST00000558013 CENPBP07199 599 aaPredicted RBP19.16■□□□□ 0.66
LDLR-207ENST00000558013 KIF27Q86VH2 1401 aa19.15■□□□□ 0.66
LDLR-207ENST00000558013 CFTRP13569 1480 aa19.15■□□□□ 0.66
LDLR-207ENST00000558013 ERICH3Q5RHP9 1530 aa19.14■□□□□ 0.65
LDLR-207ENST00000558013 ITGAEP38570 1179 aa19.11■□□□□ 0.65
LDLR-207ENST00000558013 DHX57Q6P158 1386 aaKnown RBP19.06■□□□□ 0.64
LDLR-207ENST00000558013 ARHGAP35Q9NRY4 1499 aa19.05■□□□□ 0.64
LDLR-207ENST00000558013 CUX2O14529 1486 aa19.03■□□□□ 0.64
LDLR-207ENST00000558013 IGF1RP08069 1367 aa19.03■□□□□ 0.64
LDLR-207ENST00000558013 P3H3Q8IVL6 736 aa18.98■□□□□ 0.63
LDLR-207ENST00000558013 CADPSQ9ULU8 1353 aa18.97■□□□□ 0.63
LDLR-207ENST00000558013 RRBP1Q9P2E9 1410 aaKnown RBP18.95■□□□□ 0.62
LDLR-207ENST00000558013 CCNB3Q8WWL7 1395 aa18.94■□□□□ 0.62
LDLR-207ENST00000558013 CARMIL1Q5VZK9 1371 aa18.93■□□□□ 0.62
LDLR-207ENST00000558013 PELP1Q8IZL8 1130 aaKnown RBP18.93■□□□□ 0.62
LDLR-207ENST00000558013 FGD5Q6ZNL6 1462 aa18.92■□□□□ 0.62
LDLR-207ENST00000558013 ATP1B4Q9UN42 357 aaPredicted RBP18.91■□□□□ 0.62
LDLR-207ENST00000558013 CLSPNQ9HAW4 1339 aa18.86■□□□□ 0.61
LDLR-207ENST00000558013 RAD54L2Q9Y4B4 1467 aa18.83■□□□□ 0.6
LDLR-207ENST00000558013 RAB3GAP2Q9H2M9 1393 aa18.82■□□□□ 0.6
LDLR-207ENST00000558013 FAM50AQ14320 339 aaKnown RBP18.81■□□□□ 0.6
LDLR-207ENST00000558013 CC2D2AQ9P2K1 1620 aa18.81■□□□□ 0.6
LDLR-207ENST00000558013 PHLDB1Q86UU1 1377 aa18.81■□□□□ 0.6
LDLR-207ENST00000558013 FANCD2Q9BXW9 1451 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms