RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 NISCHQ9Y2I1 1504 aa32.34■■■□□ 2.77
LDLR-202ENST00000455727 CCDC180Q9P1Z9 1646 aa27.83■■■□□ 2.04
LDLR-202ENST00000455727 ZCCHC6Q5VYS8 1495 aaKnown RBP27.3■■□□□ 1.96
LDLR-202ENST00000455727 SHROOM4Q9ULL8 1493 aa26.92■■□□□ 1.9
LDLR-202ENST00000455727 DCAF1Q9Y4B6 1507 aa26.73■■□□□ 1.87
LDLR-202ENST00000455727 DCAF8L2P0C7V8 631 aa26.49■■□□□ 1.83
LDLR-202ENST00000455727 SUPT5HO00267 1087 aaKnown RBP26.28■■□□□ 1.8
LDLR-202ENST00000455727 MYO15BQ96JP2 1530 aa26.13■■□□□ 1.77
LDLR-202ENST00000455727 NACADO15069 1562 aa25.75■■□□□ 1.71
LDLR-202ENST00000455727 SCRIBQ14160 1630 aa25.71■■□□□ 1.71
LDLR-202ENST00000455727 ABCC9O60706 1549 aa25.69■■□□□ 1.7
LDLR-202ENST00000455727 CHIC1Q5VXU3 224 aa25.56■■□□□ 1.68
LDLR-202ENST00000455727 RSF1Q96T23 1441 aaPredicted RBP25.39■■□□□ 1.65
LDLR-202ENST00000455727 RB1CC1Q8TDY2 1594 aa25.35■■□□□ 1.65
LDLR-202ENST00000455727 CECR2Q9BXF3 1484 aa25.09■■□□□ 1.61
LDLR-202ENST00000455727 MROH2BQ7Z745 1585 aa25.02■■□□□ 1.6
LDLR-202ENST00000455727 UNC13AQ9UPW8 1703 aa24.93■■□□□ 1.58
LDLR-202ENST00000455727 BAZ1AQ9NRL2 1556 aaPredicted RBP24.9■■□□□ 1.58
LDLR-202ENST00000455727 WIZO95785 1651 aa24.87■■□□□ 1.57
LDLR-202ENST00000455727 SMARCA4P51532 1647 aa24.7■■□□□ 1.54
LDLR-202ENST00000455727 TRIM41Q8WV44 630 aa24.66■■□□□ 1.54
LDLR-202ENST00000455727 LOC105371045A0A1W2PR82 267 aa24.63■■□□□ 1.53
LDLR-202ENST00000455727 BICRAQ9NZM4 1560 aa24.61■■□□□ 1.53
LDLR-202ENST00000455727 TOP2AP11388 1531 aaKnown RBP24.59■■□□□ 1.53
LDLR-202ENST00000455727 EIF4G1Q04637 1599 aaKnown RBP24.51■■□□□ 1.51
LDLR-202ENST00000455727 SMARCA2P51531 1590 aa24.41■■□□□ 1.5
LDLR-202ENST00000455727 CCDC88BA6NC98 1476 aa24.39■■□□□ 1.49
LDLR-202ENST00000455727 PABPN1Q86U42 306 aaKnown RBP eCLIP24.38■■□□□ 1.49
LDLR-202ENST00000455727 PEG3Q9GZU2 1588 aa24.37■■□□□ 1.49
LDLR-202ENST00000455727 PCGF6Q9BYE7 350 aa24.28■■□□□ 1.48
LDLR-202ENST00000455727 FAM9AQ8IZU1 332 aaPredicted RBP24.22■■□□□ 1.47
LDLR-202ENST00000455727 HRCP23327 699 aa24.19■■□□□ 1.46
LDLR-202ENST00000455727 ABCC8Q09428 1581 aa24.11■■□□□ 1.45
LDLR-202ENST00000455727 ATAD2BQ9ULI0 1458 aa24.11■■□□□ 1.45
LDLR-202ENST00000455727 TRIM26Q12899 539 aaPredicted RBP24.1■■□□□ 1.45
LDLR-202ENST00000455727 BAZ1BQ9UIG0 1483 aaKnown RBP24■■□□□ 1.43
LDLR-202ENST00000455727 EEA1Q15075 1411 aa23.91■■□□□ 1.42
LDLR-202ENST00000455727 WRNQ14191 1432 aaPredicted RBP eCLIP23.86■■□□□ 1.41
LDLR-202ENST00000455727 EHMT2Q96KQ7 1210 aa23.85■■□□□ 1.41
LDLR-202ENST00000455727 SOGA1O94964 1423 aa23.82■■□□□ 1.4
LDLR-202ENST00000455727 HMGXB3Q12766 1538 aa23.79■■□□□ 1.4
LDLR-202ENST00000455727 NCAPD3P42695 1498 aa23.78■■□□□ 1.4
LDLR-202ENST00000455727 SYNJ1O43426 1573 aa23.74■■□□□ 1.39
LDLR-202ENST00000455727 CSRNP3Q8WYN3 585 aa23.73■■□□□ 1.39
LDLR-202ENST00000455727 TNIKQ9UKE5 1360 aa23.7■■□□□ 1.38
LDLR-202ENST00000455727 RUSC2Q8N2Y8 1516 aa23.69■■□□□ 1.38
LDLR-202ENST00000455727 CEP162Q5TB80 1403 aa23.62■■□□□ 1.37
LDLR-202ENST00000455727 GOLGA3Q08378 1498 aa23.61■■□□□ 1.37
LDLR-202ENST00000455727 TOP2BQ02880 1626 aa23.58■■□□□ 1.37
LDLR-202ENST00000455727 KIF21BO75037 1637 aa23.56■■□□□ 1.36
LDLR-202ENST00000455727 BIVM-ERCC5R4GMW8 1640 aa23.54■■□□□ 1.36
LDLR-202ENST00000455727 CEP164Q9UPV0 1460 aa23.53■■□□□ 1.36
LDLR-202ENST00000455727 ZEB1P37275 1124 aaPredicted RBP23.52■■□□□ 1.36
LDLR-202ENST00000455727 PPARGC1BQ86YN6 1023 aaKnown RBP23.51■■□□□ 1.35
LDLR-202ENST00000455727 UBTFP17480 764 aaKnown RBP23.49■■□□□ 1.35
LDLR-202ENST00000455727 CFTRP13569 1480 aa23.46■■□□□ 1.35
LDLR-202ENST00000455727 PRDM2Q13029 1718 aa23.39■■□□□ 1.34
LDLR-202ENST00000455727 CUX1P39880 1505 aa23.34■■□□□ 1.33
LDLR-202ENST00000455727 RAPGEF2Q9Y4G8 1499 aa23.3■■□□□ 1.32
LDLR-202ENST00000455727 ERICH3Q5RHP9 1530 aa23.26■■□□□ 1.31
LDLR-202ENST00000455727 CLIP1P30622 1438 aa23.26■■□□□ 1.31
LDLR-202ENST00000455727 CC2D2AQ9P2K1 1620 aa23.26■■□□□ 1.31
LDLR-202ENST00000455727 PRXQ9BXM0 1461 aa23.23■■□□□ 1.31
LDLR-202ENST00000455727 CADPSQ9ULU8 1353 aa23.22■■□□□ 1.31
LDLR-202ENST00000455727 KIF27Q86VH2 1401 aa23.19■■□□□ 1.3
LDLR-202ENST00000455727 VPS8Q8N3P4 1428 aa23.17■■□□□ 1.3
LDLR-202ENST00000455727 TTBK1Q5TCY1 1321 aaPredicted RBP23.03■■□□□ 1.28
LDLR-202ENST00000455727 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.02■■□□□ 1.28
LDLR-202ENST00000455727 CCER1Q8TC90 406 aaPredicted RBP23■■□□□ 1.27
LDLR-202ENST00000455727 FANCD2Q9BXW9 1451 aa22.97■■□□□ 1.27
LDLR-202ENST00000455727 FGD5Q6ZNL6 1462 aa22.96■■□□□ 1.27
LDLR-202ENST00000455727 APLP2Q06481 763 aa22.96■■□□□ 1.27
LDLR-202ENST00000455727 CUX2O14529 1486 aa22.95■■□□□ 1.26
LDLR-202ENST00000455727 ARAP1Q96P48 1450 aa22.94■■□□□ 1.26
LDLR-202ENST00000455727 IGF1RP08069 1367 aa22.93■■□□□ 1.26
LDLR-202ENST00000455727 DNMBPQ6XZF7 1577 aa22.89■■□□□ 1.25
LDLR-202ENST00000455727 RANGAP1P46060 587 aaPredicted RBP22.87■■□□□ 1.25
LDLR-202ENST00000455727 LAMC3Q9Y6N6 1575 aa22.84■■□□□ 1.25
LDLR-202ENST00000455727 CARMIL1Q5VZK9 1371 aa22.82■■□□□ 1.24
LDLR-202ENST00000455727 ARHGAP35Q9NRY4 1499 aa22.81■■□□□ 1.24
LDLR-202ENST00000455727 TOPBP1Q92547 1522 aa22.81■■□□□ 1.24
LDLR-202ENST00000455727 NESP48681 1621 aa22.79■■□□□ 1.24
LDLR-202ENST00000455727 ABCA10Q8WWZ4 1543 aa22.78■■□□□ 1.24
LDLR-202ENST00000455727 POLA1P09884 1462 aaPredicted RBP22.75■■□□□ 1.23
LDLR-202ENST00000455727 RAD54L2Q9Y4B4 1467 aa22.69■■□□□ 1.22
LDLR-202ENST00000455727 HNRNPUL2Q1KMD3 747 aaKnown RBP22.69■■□□□ 1.22
LDLR-202ENST00000455727 CUL7Q14999 1698 aa22.66■■□□□ 1.22
LDLR-202ENST00000455727 MAP3K1Q13233 1512 aa22.65■■□□□ 1.22
LDLR-202ENST00000455727 KANK4Q5T7N3 995 aaPredicted RBP22.65■■□□□ 1.22
LDLR-202ENST00000455727 URB2Q14146 1524 aaKnown RBP22.64■■□□□ 1.22
LDLR-202ENST00000455727 WDR97A6NE52 1622 aa22.64■■□□□ 1.22
LDLR-202ENST00000455727 PDS5BQ9NTI5 1447 aa22.64■■□□□ 1.21
LDLR-202ENST00000455727 RRBP1Q9P2E9 1410 aaKnown RBP22.61■■□□□ 1.21
LDLR-202ENST00000455727 TIAM1Q13009 1591 aa22.55■■□□□ 1.2
LDLR-202ENST00000455727 FHAD1B1AJZ9 1412 aa22.55■■□□□ 1.2
LDLR-202ENST00000455727 ABCA5Q8WWZ7 1642 aa22.53■■□□□ 1.2
LDLR-202ENST00000455727 CTTNBP2Q8WZ74 1663 aa22.53■■□□□ 1.2
LDLR-202ENST00000455727 EFCAB5A4FU69 1503 aa22.53■■□□□ 1.2
LDLR-202ENST00000455727 KIF21AQ7Z4S6 1674 aa22.52■■□□□ 1.2
LDLR-202ENST00000455727 DNAJC5BQ9UF47 199 aa22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms