Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.011e-8■□□□□ 8.9
YBX3P16989 DDX39B-220ENST00000482195 1232 ntTSL 214.38□□□□□ -0.111e-8■□□□□ 8.9
YBX3P16989 ACSF3-201ENST00000317447 3664 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.291e-8■□□□□ 8.9
YBX3P16989 ATP6V1G2-DDX39B-201ENST00000376185 2039 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.321e-8■□□□□ 8.9
YBX3P16989 ACSF3-218ENST00000614302 3751 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.361e-8■□□□□ 8.9
YBX3P16989 RRM2-208ENST00000487591 592 ntTSL 212.6□□□□□ -0.391e-8■□□□□ 8.9
YBX3P16989 DDX39B-214ENST00000458640 2003 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.491e-8■□□□□ 8.9
YBX3P16989 DDX39B-202ENST00000396172 2133 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.51e-8■□□□□ 8.9
YBX3P16989 DDX39B-219ENST00000481456 5158 ntTSL 211.65□□□□□ -0.541e-8■□□□□ 8.9
YBX3P16989 RRM2-207ENST00000485717 573 ntTSL 1 (best)11.54□□□□□ -0.561e-8■□□□□ 8.9
YBX3P16989 ACSF3-209ENST00000537895 550 ntTSL 411.41□□□□□ -0.581e-8■□□□□ 8.9
YBX3P16989 DDX39B-215ENST00000462256 4027 ntTSL 210.89□□□□□ -0.671e-8■□□□□ 8.9
YBX3P16989 PDCD10-213ENST00000487678 416 ntTSL 310.26□□□□□ -0.771e-8■□□□□ 8.9
YBX3P16989 DDX39B-207ENST00000427214 1005 ntTSL 58.92□□□□□ -0.981e-8■□□□□ 8.9
YBX3P16989 RRM2-205ENST00000462343 454 ntTSL 28.36□□□□□ -1.071e-8■□□□□ 8.9
YBX3P16989 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC7.02□□□□□ -1.291e-8■□□□□ 8.9
YBX3P16989 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.078e-7■□□□□ 8.9
YBX3P16989 ELP1-204ENST00000537196 3823 ntTSL 1 (best) BASIC12.94□□□□□ -0.348e-7■□□□□ 8.9
YBX3P16989 ELP1-203ENST00000495759 2840 ntTSL 1 (best)8.5□□□□□ -1.058e-7■□□□□ 8.9
YBX3P16989 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC26.95■■□□□ 1.912e-15■□□□□ 8.9
YBX3P16989 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.832e-15■□□□□ 8.9
YBX3P16989 ARF1-201ENST00000272102 1888 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.232e-15■□□□□ 8.9
YBX3P16989 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC21.9■■□□□ 1.11e-10■□□□□ 8.9
YBX3P16989 LRP1-202ENST00000338962 2169 ntTSL 1 (best) BASIC13.05□□□□□ -0.321e-10■□□□□ 8.9
YBX3P16989 LRP1-207ENST00000554174 2175 ntTSL 1 (best) BASIC12.88□□□□□ -0.351e-10■□□□□ 8.9
YBX3P16989 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.542e-6■□□□□ 8.9
YBX3P16989 NUP214-226ENST00000531600 1775 ntTSL 212.12□□□□□ -0.472e-8■□□□□ 8.9
YBX3P16989 NUP214-220ENST00000529286 493 ntTSL 311.97□□□□□ -0.492e-8■□□□□ 8.9
YBX3P16989 NUP214-208ENST00000483497 3275 ntTSL 2 BASIC9.36□□□□□ -0.912e-8■□□□□ 8.9
YBX3P16989 INCENP-203ENST00000528037 1372 ntTSL 1 (best)19.11■□□□□ 0.656e-8■□□□□ 8.9
YBX3P16989 INCENP-201ENST00000278849 3698 ntAPPRIS P3 TSL 5 BASIC13.76□□□□□ -0.216e-8■□□□□ 8.9
YBX3P16989 INCENP-202ENST00000394818 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.226e-8■□□□□ 8.9
YBX3P16989 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC18.38■□□□□ 0.538e-22■□□□□ 8.9
YBX3P16989 KHSRP-208ENST00000597656 328 ntTSL 510.64□□□□□ -0.717e-9■□□□□ 8.9
YBX3P16989 REPIN1-206ENST00000469309 910 ntTSL 233.38■■■□□ 2.932e-12■□□□□ 8.9
YBX3P16989 REPIN1-215ENST00000495535 672 ntTSL 329.71■■■□□ 2.352e-12■□□□□ 8.9
YBX3P16989 REPIN1-207ENST00000473391 1064 ntTSL 228.21■■■□□ 2.112e-12■□□□□ 8.9
YBX3P16989 REPIN1-212ENST00000487455 464 ntTSL 413.44□□□□□ -0.262e-12■□□□□ 8.9
YBX3P16989 PPP1CC-211ENST00000620030 582 ntTSL 231.59■■■□□ 2.653e-13■□□□□ 8.9
YBX3P16989 C3-202ENST00000594005 418 ntTSL 316.2■□□□□ 0.181e-41■□□□□ 8.9
YBX3P16989 P4HB-206ENST00000471535 579 ntTSL 430.68■■■□□ 2.51e-31■□□□□ 8.9
YBX3P16989 P4HB-205ENST00000467086 785 ntTSL 530.29■■■□□ 2.441e-31■□□□□ 8.9
YBX3P16989 P4HB-210ENST00000476482 765 ntTSL 1 (best)15.8■□□□□ 0.121e-21■□□□□ 8.9
YBX3P16989 CTNNA1-223ENST00000520520 484 ntTSL 310.93□□□□□ -0.665e-8■□□□□ 8.9
YBX3P16989 CTNNA1-243ENST00000540387 2684 ntTSL 1 (best) BASIC10.2□□□□□ -0.785e-8■□□□□ 8.9
YBX3P16989 HEPACAM-203ENST00000528971 946 ntTSL 213.99□□□□□ -0.178e-10■□□□□ 8.9
YBX3P16989 SLC6A8-206ENST00000457723 266 ntTSL 517.12■□□□□ 0.332e-27■□□□□ 8.9
YBX3P16989 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.189e-7■□□□□ 8.9
YBX3P16989 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC40.76■■■■■ 4.122e-11■□□□□ 8.9
YBX3P16989 ARMC6-211ENST00000538663 552 ntTSL 431.92■■■□□ 2.72e-11■□□□□ 8.9
YBX3P16989 ARMC6-209ENST00000536098 563 ntTSL 526.75■■□□□ 1.872e-11■□□□□ 8.9
YBX3P16989 ARMC6-210ENST00000537263 1318 ntTSL 326.53■■□□□ 1.842e-11■□□□□ 8.9
YBX3P16989 ARMC6-204ENST00000535288 622 ntTSL 425.14■■□□□ 1.622e-11■□□□□ 8.9
YBX3P16989 ARMC6-217ENST00000541898 1198 ntTSL 225.14■■□□□ 1.622e-11■□□□□ 8.9
YBX3P16989 ARMC6-214ENST00000540707 557 ntTSL 423.92■■□□□ 1.422e-11■□□□□ 8.9
YBX3P16989 ARMC6-218ENST00000543877 537 ntTSL 423.68■■□□□ 1.382e-11■□□□□ 8.9
YBX3P16989 ARMC6-219ENST00000545091 1079 ntTSL 523.5■■□□□ 1.352e-11■□□□□ 8.9
YBX3P16989 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC22.6■■□□□ 1.212e-11■□□□□ 8.9
YBX3P16989 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC20.74■□□□□ 0.912e-11■□□□□ 8.9
YBX3P16989 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.712e-11■□□□□ 8.9
YBX3P16989 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC18.98■□□□□ 0.632e-11■□□□□ 8.9
YBX3P16989 ARMC6-215ENST00000540792 951 ntTSL 218.85■□□□□ 0.612e-11■□□□□ 8.9
YBX3P16989 CYBA-206ENST00000566229 405 ntTSL 317.64■□□□□ 0.412e-11■□□□□ 8.9
YBX3P16989 CYBA-207ENST00000566534 1006 ntTSL 517.64■□□□□ 0.412e-11■□□□□ 8.9
YBX3P16989 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC17.48■□□□□ 0.392e-11■□□□□ 8.9
YBX3P16989 ARMC6-212ENST00000539985 1252 ntTSL 216.97■□□□□ 0.312e-11■□□□□ 8.9
YBX3P16989 ARMC6-216ENST00000541725 560 ntTSL 516.4■□□□□ 0.222e-11■□□□□ 8.9
YBX3P16989 ARMC6-207ENST00000535758 505 ntTSL 314.51□□□□□ -0.092e-11■□□□□ 8.9
YBX3P16989 CYBA-205ENST00000565588 221 ntTSL 214.13□□□□□ -0.152e-11■□□□□ 8.9
YBX3P16989 NUP214-204ENST00000453861 3208 ntTSL 510.07□□□□□ -0.81e-8■□□□□ 8.9
YBX3P16989 RPL35A-209ENST00000496582 579 ntTSL 29.54□□□□□ -0.881e-323■□□□□ 8.9
YBX3P16989 MTPN-202ENST00000435723 879 ntTSL 1 (best) BASIC12.67□□□□□ -0.389e-16■□□□□ 8.9
YBX3P16989 RPL17-201ENST00000578528 481 ntTSL 328.92■■■□□ 2.224e-42■□□□□ 8.9
YBX3P16989 RPL17-206ENST00000579495 914 ntTSL 226.83■■□□□ 1.894e-42■□□□□ 8.9
YBX3P16989 RPL17-202ENST00000578532 684 ntTSL 224.71■■□□□ 1.554e-42■□□□□ 8.9
YBX3P16989 RPL17-218ENST00000583637 758 ntTSL 324.71■■□□□ 1.554e-42■□□□□ 8.9
YBX3P16989 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC24.55■■□□□ 1.524e-42■□□□□ 8.9
YBX3P16989 RPL17-209ENST00000580387 827 ntTSL 523.03■■□□□ 1.284e-42■□□□□ 8.9
YBX3P16989 RPL17-223ENST00000618613 856 ntAPPRIS P1 TSL 322.92■■□□□ 1.264e-42■□□□□ 8.9
YBX3P16989 RPL17-221ENST00000615760 650 ntTSL 322.39■■□□□ 1.174e-42■□□□□ 8.9
YBX3P16989 RPL17-C18orf32-201ENST00000332968 948 ntTSL 5 BASIC14.85□□□□□ -0.034e-42■□□□□ 8.9
YBX3P16989 RPL17-210ENST00000581091 573 ntTSL 214.85□□□□□ -0.034e-42■□□□□ 8.9
YBX3P16989 RPL17-220ENST00000615479 586 ntTSL 514.85□□□□□ -0.034e-42■□□□□ 8.9
YBX3P16989 RPL17-224ENST00000618619 747 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.034e-42■□□□□ 8.9
YBX3P16989 RPL17-222ENST00000617346 795 ntTSL 514.73□□□□□ -0.054e-42■□□□□ 8.9
YBX3P16989 RPL17-205ENST00000579408 859 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.394e-42■□□□□ 8.9
YBX3P16989 RPL17-207ENST00000580210 705 ntTSL 2 BASIC12.6□□□□□ -0.394e-42■□□□□ 8.9
YBX3P16989 RPL17-212ENST00000581373 584 ntTSL 2 BASIC11.41□□□□□ -0.584e-42■□□□□ 8.9
YBX3P16989 RPL17-C18orf32-203ENST00000584895 1440 ntAPPRIS P1 TSL 3 BASIC9.35□□□□□ -0.914e-42■□□□□ 8.9
YBX3P16989 RPL17-C18orf32-202ENST00000577910 1012 ntTSL 58.34□□□□□ -1.074e-42■□□□□ 8.9
YBX3P16989 RPL17-208ENST00000580261 669 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.074e-42■□□□□ 8.9
YBX3P16989 RPL17-217ENST00000583036 576 ntTSL 36.85□□□□□ -1.314e-42■□□□□ 8.9
YBX3P16989 UQCRC1-205ENST00000463708 739 ntTSL 317.07■□□□□ 0.322e-11■□□□□ 8.9
YBX3P16989 KDM1A-204ENST00000481879 525 ntTSL 36.02□□□□□ -1.455e-8■□□□□ 8.9
YBX3P16989 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.571e-6■□□□□ 8.9
YBX3P16989 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.631e-6■□□□□ 8.9
YBX3P16989 TCF12-208ENST00000557947 575 ntTSL 429.46■■■□□ 2.315e-8■□□□□ 8.9
YBX3P16989 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.213e-7■□□□□ 8.9
YBX3P16989 SMDT1-203ENST00000484235 556 ntTSL 1 (best)34.7■■■■□ 3.159e-8■□□□□ 8.9
YBX3P16989 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC31.13■■■□□ 2.578e-7■□□□□ 8.9
Retrieved 100 of 29,075 protein–RNA pairs in 533 ms