RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 NISCHQ9Y2I1 1504 aa19.72■□□□□ 0.75
CTNNA1-243ENST00000540387 CCDC180Q9P1Z9 1646 aa17.17■□□□□ 0.34
CTNNA1-243ENST00000540387 AEBP2Q6ZN18 517 aaPredicted RBP16.76■□□□□ 0.27
CTNNA1-243ENST00000540387 ABCC9O60706 1549 aa16.57■□□□□ 0.24
CTNNA1-243ENST00000540387 DCAF8L2P0C7V8 631 aa16.51■□□□□ 0.23
CTNNA1-243ENST00000540387 ZCCHC6Q5VYS8 1495 aaKnown RBP16.5■□□□□ 0.23
CTNNA1-243ENST00000540387 PELP1Q8IZL8 1130 aaKnown RBP16.35■□□□□ 0.21
CTNNA1-243ENST00000540387 DCAF1Q9Y4B6 1507 aa16.25■□□□□ 0.19
CTNNA1-243ENST00000540387 CHIC1Q5VXU3 224 aa16.18■□□□□ 0.18
CTNNA1-243ENST00000540387 MYO15BQ96JP2 1530 aa16.13■□□□□ 0.17
CTNNA1-243ENST00000540387 NACADO15069 1562 aa16.11■□□□□ 0.17
CTNNA1-243ENST00000540387 HRCP23327 699 aa16.1■□□□□ 0.17
CTNNA1-243ENST00000540387 SHROOM4Q9ULL8 1493 aa16.06■□□□□ 0.16
CTNNA1-243ENST00000540387 RB1CC1Q8TDY2 1594 aa16.01■□□□□ 0.15
CTNNA1-243ENST00000540387 MYT1Q01538 1121 aa15.88■□□□□ 0.13
CTNNA1-243ENST00000540387 SCRIBQ14160 1630 aa15.86■□□□□ 0.13
CTNNA1-243ENST00000540387 PPARGC1BQ86YN6 1023 aaKnown RBP15.72■□□□□ 0.11
CTNNA1-243ENST00000540387 PABPN1Q86U42 306 aaKnown RBP eCLIP15.66■□□□□ 0.1
CTNNA1-243ENST00000540387 UNC13AQ9UPW8 1703 aa15.63■□□□□ 0.09
CTNNA1-243ENST00000540387 BICRAQ9NZM4 1560 aa15.56■□□□□ 0.08
CTNNA1-243ENST00000540387 SCAF1Q9H7N4 1312 aaKnown RBP15.53■□□□□ 0.08
CTNNA1-243ENST00000540387 PCGF6Q9BYE7 350 aa15.47■□□□□ 0.07
CTNNA1-243ENST00000540387 CECR2Q9BXF3 1484 aa15.39■□□□□ 0.05
CTNNA1-243ENST00000540387 SUPT5HO00267 1087 aaKnown RBP15.38■□□□□ 0.05
CTNNA1-243ENST00000540387 RSF1Q96T23 1441 aaPredicted RBP15.26■□□□□ 0.03
CTNNA1-243ENST00000540387 MROH2BQ7Z745 1585 aa15.25■□□□□ 0.03
CTNNA1-243ENST00000540387 BAZ1AQ9NRL2 1556 aaPredicted RBP15.21■□□□□ 0.03
CTNNA1-243ENST00000540387 SMARCA4P51532 1647 aa15.16■□□□□ 0.02
CTNNA1-243ENST00000540387 EIF4G1Q04637 1599 aaKnown RBP15.11■□□□□ 0.01
CTNNA1-243ENST00000540387 WIZO95785 1651 aa15.08■□□□□ 0
CTNNA1-243ENST00000540387 TTBK1Q5TCY1 1321 aaPredicted RBP15.07■□□□□ 0
CTNNA1-243ENST00000540387 ATAD2BQ9ULI0 1458 aa15.02□□□□□ -0.01
CTNNA1-243ENST00000540387 ACIN1Q9UKV3 1341 aaKnown RBP14.98□□□□□ -0.01
CTNNA1-243ENST00000540387 PEG3Q9GZU2 1588 aa14.97□□□□□ -0.01
CTNNA1-243ENST00000540387 SMARCA2P51531 1590 aa14.95□□□□□ -0.02
CTNNA1-243ENST00000540387 CC2D2AQ9P2K1 1620 aa14.93□□□□□ -0.02
CTNNA1-243ENST00000540387 NCAPD3P42695 1498 aa14.92□□□□□ -0.02
CTNNA1-243ENST00000540387 BAZ1BQ9UIG0 1483 aaKnown RBP14.91□□□□□ -0.02
CTNNA1-243ENST00000540387 ZEB1P37275 1124 aaPredicted RBP14.9□□□□□ -0.02
CTNNA1-243ENST00000540387 NEUROD1Q13562 356 aa14.9□□□□□ -0.02
CTNNA1-243ENST00000540387 TOP2AP11388 1531 aaKnown RBP14.9□□□□□ -0.02
CTNNA1-243ENST00000540387 DNAJC5BQ9UF47 199 aa14.89□□□□□ -0.03
CTNNA1-243ENST00000540387 GTF3C3Q9Y5Q9 886 aa14.88□□□□□ -0.03
CTNNA1-243ENST00000540387 TRIM26Q12899 539 aaPredicted RBP14.84□□□□□ -0.03
CTNNA1-243ENST00000540387 HMGXB3Q12766 1538 aa14.82□□□□□ -0.04
CTNNA1-243ENST00000540387 CCDC88BA6NC98 1476 aa14.8□□□□□ -0.04
CTNNA1-243ENST00000540387 BCL11AQ9H165 835 aa14.79□□□□□ -0.04
CTNNA1-243ENST00000540387 CENPBP07199 599 aaPredicted RBP14.71□□□□□ -0.05
CTNNA1-243ENST00000540387 FAM9AQ8IZU1 332 aaPredicted RBP14.67□□□□□ -0.06
CTNNA1-243ENST00000540387 PRKCSHP14314 528 aaPredicted RBP14.63□□□□□ -0.07
CTNNA1-243ENST00000540387 CADPSQ9ULU8 1353 aa14.55□□□□□ -0.08
CTNNA1-243ENST00000540387 LOC105371045A0A1W2PR82 267 aa14.54□□□□□ -0.08
CTNNA1-243ENST00000540387 CFTRP13569 1480 aa14.53□□□□□ -0.08
CTNNA1-243ENST00000540387 NESP48681 1621 aa14.49□□□□□ -0.09
CTNNA1-243ENST00000540387 TRIM41Q8WV44 630 aa14.44□□□□□ -0.1
CTNNA1-243ENST00000540387 ANP32EQ9BTT0 268 aa14.43□□□□□ -0.1
CTNNA1-243ENST00000540387 ABCC8Q09428 1581 aa14.42□□□□□ -0.1
CTNNA1-243ENST00000540387 DIEXFQ68CQ4 756 aaKnown RBP14.41□□□□□ -0.1
CTNNA1-243ENST00000540387 LAMC3Q9Y6N6 1575 aa14.39□□□□□ -0.11
CTNNA1-243ENST00000540387 FANCD2Q9BXW9 1451 aa14.36□□□□□ -0.11
CTNNA1-243ENST00000540387 WRNQ14191 1432 aaPredicted RBP eCLIP14.36□□□□□ -0.11
CTNNA1-243ENST00000540387 PHF23Q9BUL5 403 aaPredicted RBP14.36□□□□□ -0.11
CTNNA1-243ENST00000540387 PDS5BQ9NTI5 1447 aa14.34□□□□□ -0.11
CTNNA1-243ENST00000540387 CSRNP3Q8WYN3 585 aa14.29□□□□□ -0.12
CTNNA1-243ENST00000540387 PRDM2Q13029 1718 aa14.29□□□□□ -0.12
CTNNA1-243ENST00000540387 CEP164Q9UPV0 1460 aa14.27□□□□□ -0.12
CTNNA1-243ENST00000540387 SYNJ1O43426 1573 aa14.27□□□□□ -0.13
CTNNA1-243ENST00000540387 ERICH6Q7L0X2 663 aa14.27□□□□□ -0.13
CTNNA1-243ENST00000540387 CUX1P39880 1505 aa14.25□□□□□ -0.13
CTNNA1-243ENST00000540387 YTHDC1Q96MU7 727 aaKnown RBP14.22□□□□□ -0.13
CTNNA1-243ENST00000540387 KIF21AQ7Z4S6 1674 aa14.22□□□□□ -0.13
CTNNA1-243ENST00000540387 SLC24A1O60721 1099 aa14.21□□□□□ -0.13
CTNNA1-243ENST00000540387 TOP2BQ02880 1626 aa14.21□□□□□ -0.14
CTNNA1-243ENST00000540387 ERCC6Q03468 1493 aa14.21□□□□□ -0.14
CTNNA1-243ENST00000540387 URB2Q14146 1524 aaKnown RBP14.19□□□□□ -0.14
CTNNA1-243ENST00000540387 TOPBP1Q92547 1522 aa14.17□□□□□ -0.14
CTNNA1-243ENST00000540387 APLP2Q06481 763 aa14.16□□□□□ -0.14
CTNNA1-243ENST00000540387 BIVM-ERCC5R4GMW8 1640 aa14.16□□□□□ -0.14
CTNNA1-243ENST00000540387 SOGA1O94964 1423 aa14.15□□□□□ -0.14
CTNNA1-243ENST00000540387 DNMBPQ6XZF7 1577 aa14.15□□□□□ -0.14
CTNNA1-243ENST00000540387 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.14□□□□□ -0.15
CTNNA1-243ENST00000540387 MRC2Q9UBG0 1479 aa14.14□□□□□ -0.15
CTNNA1-243ENST00000540387 FGD5Q6ZNL6 1462 aa14.14□□□□□ -0.15
CTNNA1-243ENST00000540387 TSHZ2Q9NRE2 1034 aa14.13□□□□□ -0.15
CTNNA1-243ENST00000540387 CCER1Q8TC90 406 aaPredicted RBP14.13□□□□□ -0.15
CTNNA1-243ENST00000540387 RUSC2Q8N2Y8 1516 aa14.11□□□□□ -0.15
CTNNA1-243ENST00000540387 POLA1P09884 1462 aaPredicted RBP14.1□□□□□ -0.15
CTNNA1-243ENST00000540387 RAD54L2Q9Y4B4 1467 aa14.09□□□□□ -0.15
CTNNA1-243ENST00000540387 EHMT2Q96KQ7 1210 aa14.06□□□□□ -0.16
CTNNA1-243ENST00000540387 WDR62O43379 1518 aa14.06□□□□□ -0.16
CTNNA1-243ENST00000540387 THOC2Q8NI27 1593 aaKnown RBP14.04□□□□□ -0.16
CTNNA1-243ENST00000540387 SENP3Q9H4L4 574 aaPredicted RBP14.04□□□□□ -0.16
CTNNA1-243ENST00000540387 SUPT16HQ9Y5B9 1047 aaKnown RBP14.04□□□□□ -0.16
CTNNA1-243ENST00000540387 CUX2O14529 1486 aa14.03□□□□□ -0.16
CTNNA1-243ENST00000540387 KIF27Q86VH2 1401 aa14.01□□□□□ -0.17
CTNNA1-243ENST00000540387 EEA1Q15075 1411 aa14.01□□□□□ -0.17
CTNNA1-243ENST00000540387 ZNF316A6NFI3 1004 aaPredicted RBP14□□□□□ -0.17
CTNNA1-243ENST00000540387 TDRD9Q8NDG6 1382 aaKnown RBP14□□□□□ -0.17
CTNNA1-243ENST00000540387 MIER1Q8N108 512 aa14□□□□□ -0.17
CTNNA1-243ENST00000540387 ABCA10Q8WWZ4 1543 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms