RNA–Protein interactions for RNA: ENST00000554174.1

LRP1-207, Transcript of LDL receptor related protein 1, humanhuman

TSL 1 (best) BASIC

Gene LRP1, Length 2,175 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRP1-207ENST00000554174 NISCHQ9Y2I1 1504 aa26.12■■□□□ 1.77
LRP1-207ENST00000554174 CCDC180Q9P1Z9 1646 aa22.33■■□□□ 1.16
LRP1-207ENST00000554174 ZCCHC6Q5VYS8 1495 aaKnown RBP22.05■■□□□ 1.12
LRP1-207ENST00000554174 SHROOM4Q9ULL8 1493 aa22.05■■□□□ 1.12
LRP1-207ENST00000554174 DCAF8L2P0C7V8 631 aa21.64■■□□□ 1.06
LRP1-207ENST00000554174 SUPT5HO00267 1087 aaKnown RBP21.48■■□□□ 1.03
LRP1-207ENST00000554174 DCAF1Q9Y4B6 1507 aa21.44■■□□□ 1.02
LRP1-207ENST00000554174 MYO15BQ96JP2 1530 aa20.91■□□□□ 0.94
LRP1-207ENST00000554174 SCRIBQ14160 1630 aa20.87■□□□□ 0.93
LRP1-207ENST00000554174 ABCC9O60706 1549 aa20.86■□□□□ 0.93
LRP1-207ENST00000554174 CHIC1Q5VXU3 224 aa20.8■□□□□ 0.92
LRP1-207ENST00000554174 NACADO15069 1562 aa20.69■□□□□ 0.9
LRP1-207ENST00000554174 RSF1Q96T23 1441 aaPredicted RBP20.57■□□□□ 0.88
LRP1-207ENST00000554174 CECR2Q9BXF3 1484 aa20.4■□□□□ 0.86
LRP1-207ENST00000554174 RB1CC1Q8TDY2 1594 aa20.39■□□□□ 0.85
LRP1-207ENST00000554174 MROH2BQ7Z745 1585 aa20.3■□□□□ 0.84
LRP1-207ENST00000554174 WIZO95785 1651 aa20.18■□□□□ 0.82
LRP1-207ENST00000554174 LOC105371045A0A1W2PR82 267 aa20.18■□□□□ 0.82
LRP1-207ENST00000554174 UNC13AQ9UPW8 1703 aa20.15■□□□□ 0.82
LRP1-207ENST00000554174 BAZ1AQ9NRL2 1556 aaPredicted RBP20.06■□□□□ 0.8
LRP1-207ENST00000554174 TRIM41Q8WV44 630 aa20.03■□□□□ 0.8
LRP1-207ENST00000554174 SMARCA4P51532 1647 aa19.94■□□□□ 0.78
LRP1-207ENST00000554174 PABPN1Q86U42 306 aaKnown RBP eCLIP19.9■□□□□ 0.78
LRP1-207ENST00000554174 BICRAQ9NZM4 1560 aa19.89■□□□□ 0.78
LRP1-207ENST00000554174 PCGF6Q9BYE7 350 aa19.87■□□□□ 0.77
LRP1-207ENST00000554174 FAM9AQ8IZU1 332 aaPredicted RBP19.85■□□□□ 0.77
LRP1-207ENST00000554174 TOP2AP11388 1531 aaKnown RBP19.84■□□□□ 0.77
LRP1-207ENST00000554174 EIF4G1Q04637 1599 aaKnown RBP19.82■□□□□ 0.76
LRP1-207ENST00000554174 CCDC88BA6NC98 1476 aa19.76■□□□□ 0.75
LRP1-207ENST00000554174 SMARCA2P51531 1590 aa19.74■□□□□ 0.75
LRP1-207ENST00000554174 HRCP23327 699 aa19.71■□□□□ 0.75
LRP1-207ENST00000554174 EHMT2Q96KQ7 1210 aa19.68■□□□□ 0.74
LRP1-207ENST00000554174 ABCC8Q09428 1581 aa19.63■□□□□ 0.73
LRP1-207ENST00000554174 PEG3Q9GZU2 1588 aa19.58■□□□□ 0.73
LRP1-207ENST00000554174 TRIM26Q12899 539 aaPredicted RBP19.55■□□□□ 0.72
LRP1-207ENST00000554174 ATAD2BQ9ULI0 1458 aa19.49■□□□□ 0.71
LRP1-207ENST00000554174 BAZ1BQ9UIG0 1483 aaKnown RBP19.4■□□□□ 0.7
LRP1-207ENST00000554174 SOGA1O94964 1423 aa19.4■□□□□ 0.7
LRP1-207ENST00000554174 PPARGC1BQ86YN6 1023 aaKnown RBP19.36■□□□□ 0.69
LRP1-207ENST00000554174 RUSC2Q8N2Y8 1516 aa19.32■□□□□ 0.68
LRP1-207ENST00000554174 WRNQ14191 1432 aaPredicted RBP eCLIP19.31■□□□□ 0.68
LRP1-207ENST00000554174 SYNJ1O43426 1573 aa19.26■□□□□ 0.67
LRP1-207ENST00000554174 CSRNP3Q8WYN3 585 aa19.23■□□□□ 0.67
LRP1-207ENST00000554174 EEA1Q15075 1411 aa19.22■□□□□ 0.67
LRP1-207ENST00000554174 CEP162Q5TB80 1403 aa19.17■□□□□ 0.66
LRP1-207ENST00000554174 TNIKQ9UKE5 1360 aa19.16■□□□□ 0.66
LRP1-207ENST00000554174 NCAPD3P42695 1498 aa19.15■□□□□ 0.66
LRP1-207ENST00000554174 HMGXB3Q12766 1538 aa19.13■□□□□ 0.65
LRP1-207ENST00000554174 UBTFP17480 764 aaKnown RBP19.11■□□□□ 0.65
LRP1-207ENST00000554174 GOLGA3Q08378 1498 aa19.08■□□□□ 0.65
LRP1-207ENST00000554174 TOP2BQ02880 1626 aa19.04■□□□□ 0.64
LRP1-207ENST00000554174 KIF21BO75037 1637 aa19.01■□□□□ 0.63
LRP1-207ENST00000554174 CEP164Q9UPV0 1460 aa19■□□□□ 0.63
LRP1-207ENST00000554174 TTBK1Q5TCY1 1321 aaPredicted RBP18.98■□□□□ 0.63
LRP1-207ENST00000554174 BIVM-ERCC5R4GMW8 1640 aa18.98■□□□□ 0.63
LRP1-207ENST00000554174 ZEB1P37275 1124 aaPredicted RBP18.96■□□□□ 0.63
LRP1-207ENST00000554174 CFTRP13569 1480 aa18.93■□□□□ 0.62
LRP1-207ENST00000554174 RAPGEF2Q9Y4G8 1499 aa18.93■□□□□ 0.62
LRP1-207ENST00000554174 CUX1P39880 1505 aa18.91■□□□□ 0.62
LRP1-207ENST00000554174 CLIP1P30622 1438 aa18.86■□□□□ 0.61
LRP1-207ENST00000554174 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.84■□□□□ 0.61
LRP1-207ENST00000554174 CC2D2AQ9P2K1 1620 aa18.81■□□□□ 0.6
LRP1-207ENST00000554174 RANGAP1P46060 587 aaPredicted RBP18.79■□□□□ 0.6
LRP1-207ENST00000554174 PRDM2Q13029 1718 aa18.78■□□□□ 0.6
LRP1-207ENST00000554174 PRXQ9BXM0 1461 aa18.78■□□□□ 0.6
LRP1-207ENST00000554174 CADPSQ9ULU8 1353 aa18.75■□□□□ 0.59
LRP1-207ENST00000554174 VPS8Q8N3P4 1428 aa18.75■□□□□ 0.59
LRP1-207ENST00000554174 CCER1Q8TC90 406 aaPredicted RBP18.74■□□□□ 0.59
LRP1-207ENST00000554174 ERICH3Q5RHP9 1530 aa18.74■□□□□ 0.59
LRP1-207ENST00000554174 KIF27Q86VH2 1401 aa18.72■□□□□ 0.59
LRP1-207ENST00000554174 ARAP1Q96P48 1450 aa18.62■□□□□ 0.57
LRP1-207ENST00000554174 CUX2O14529 1486 aa18.61■□□□□ 0.57
LRP1-207ENST00000554174 FGD5Q6ZNL6 1462 aa18.6■□□□□ 0.57
LRP1-207ENST00000554174 APLP2Q06481 763 aa18.58■□□□□ 0.57
LRP1-207ENST00000554174 FANCD2Q9BXW9 1451 aa18.58■□□□□ 0.56
LRP1-207ENST00000554174 IGF1RP08069 1367 aa18.57■□□□□ 0.56
LRP1-207ENST00000554174 NESP48681 1621 aa18.55■□□□□ 0.56
LRP1-207ENST00000554174 HNRNPUL2Q1KMD3 747 aaKnown RBP18.54■□□□□ 0.56
LRP1-207ENST00000554174 ARHGAP35Q9NRY4 1499 aa18.5■□□□□ 0.55
LRP1-207ENST00000554174 KANK4Q5T7N3 995 aaPredicted RBP18.48■□□□□ 0.55
LRP1-207ENST00000554174 CARMIL1Q5VZK9 1371 aa18.47■□□□□ 0.55
LRP1-207ENST00000554174 DNMBPQ6XZF7 1577 aa18.45■□□□□ 0.54
LRP1-207ENST00000554174 RAD54L2Q9Y4B4 1467 aa18.44■□□□□ 0.54
LRP1-207ENST00000554174 TOPBP1Q92547 1522 aa18.44■□□□□ 0.54
LRP1-207ENST00000554174 DNAJC5BQ9UF47 199 aa18.43■□□□□ 0.54
LRP1-207ENST00000554174 POLA1P09884 1462 aaPredicted RBP18.41■□□□□ 0.54
LRP1-207ENST00000554174 ABCA10Q8WWZ4 1543 aa18.38■□□□□ 0.53
LRP1-207ENST00000554174 LAMC3Q9Y6N6 1575 aa18.36■□□□□ 0.53
LRP1-207ENST00000554174 URB2Q14146 1524 aaKnown RBP18.34■□□□□ 0.53
LRP1-207ENST00000554174 RRBP1Q9P2E9 1410 aaKnown RBP18.28■□□□□ 0.52
LRP1-207ENST00000554174 WDR97A6NE52 1622 aa18.26■□□□□ 0.51
LRP1-207ENST00000554174 P3H3Q8IVL6 736 aa18.25■□□□□ 0.51
LRP1-207ENST00000554174 TIAM1Q13009 1591 aa18.24■□□□□ 0.51
LRP1-207ENST00000554174 DIEXFQ68CQ4 756 aaKnown RBP18.24■□□□□ 0.51
LRP1-207ENST00000554174 CUL7Q14999 1698 aa18.23■□□□□ 0.51
LRP1-207ENST00000554174 PDS5BQ9NTI5 1447 aa18.23■□□□□ 0.51
LRP1-207ENST00000554174 KIF21AQ7Z4S6 1674 aa18.22■□□□□ 0.51
LRP1-207ENST00000554174 TDRD9Q8NDG6 1382 aaKnown RBP18.22■□□□□ 0.51
LRP1-207ENST00000554174 CCNB3Q8WWL7 1395 aa18.21■□□□□ 0.51
LRP1-207ENST00000554174 MAP3K1Q13233 1512 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms