RNA–Protein interactions for RNA: ENST00000520520.1

CTNNA1-223, Transcript of catenin alpha 1, humanhuman

TSL 3

Gene CTNNA1, Length 484 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-223ENST00000520520 AEBP2Q6ZN18 517 aaPredicted RBP20.52■□□□□ 0.88
CTNNA1-223ENST00000520520 CHIC1Q5VXU3 224 aa20.06■□□□□ 0.8
CTNNA1-223ENST00000520520 NISCHQ9Y2I1 1504 aa19.59■□□□□ 0.73
CTNNA1-223ENST00000520520 ABCC9O60706 1549 aa17.89■□□□□ 0.45
CTNNA1-223ENST00000520520 PHF23Q9BUL5 403 aaPredicted RBP17.74■□□□□ 0.43
CTNNA1-223ENST00000520520 CCDC180Q9P1Z9 1646 aa17.61■□□□□ 0.41
CTNNA1-223ENST00000520520 SENP3Q9H4L4 574 aaPredicted RBP17.24■□□□□ 0.35
CTNNA1-223ENST00000520520 RB1CC1Q8TDY2 1594 aa16.87■□□□□ 0.29
CTNNA1-223ENST00000520520 DNAJC5BQ9UF47 199 aa16.86■□□□□ 0.29
CTNNA1-223ENST00000520520 DCAF8L2P0C7V8 631 aa16.81■□□□□ 0.28
CTNNA1-223ENST00000520520 NACADO15069 1562 aa16.68■□□□□ 0.26
CTNNA1-223ENST00000520520 PABPN1Q86U42 306 aaKnown RBP eCLIP16.66■□□□□ 0.26
CTNNA1-223ENST00000520520 UNC13AQ9UPW8 1703 aa16.53■□□□□ 0.24
CTNNA1-223ENST00000520520 BICRAQ9NZM4 1560 aa16.37■□□□□ 0.21
CTNNA1-223ENST00000520520 MYO15BQ96JP2 1530 aa16.3■□□□□ 0.2
CTNNA1-223ENST00000520520 PLPPR3Q6T4P5 718 aa16.26■□□□□ 0.19
CTNNA1-223ENST00000520520 ZCCHC6Q5VYS8 1495 aaKnown RBP16.2■□□□□ 0.18
CTNNA1-223ENST00000520520 SCRIBQ14160 1630 aa16.19■□□□□ 0.18
CTNNA1-223ENST00000520520 CC2D2AQ9P2K1 1620 aa16.1■□□□□ 0.17
CTNNA1-223ENST00000520520 FOXD1Q16676 465 aa16.09■□□□□ 0.17
CTNNA1-223ENST00000520520 CECR2Q9BXF3 1484 aa16.08■□□□□ 0.16
CTNNA1-223ENST00000520520 DCAF1Q9Y4B6 1507 aa16.08■□□□□ 0.16
CTNNA1-223ENST00000520520 SHROOM4Q9ULL8 1493 aa16.03■□□□□ 0.16
CTNNA1-223ENST00000520520 EIF4G1Q04637 1599 aaKnown RBP16■□□□□ 0.15
CTNNA1-223ENST00000520520 PPP6R1Q9UPN7 881 aa15.63■□□□□ 0.09
CTNNA1-223ENST00000520520 ADRA2BP18089 450 aa15.57■□□□□ 0.08
CTNNA1-223ENST00000520520 DNAJC5Q9H3Z4 198 aa15.53■□□□□ 0.08
CTNNA1-223ENST00000520520 ERCC6Q03468 1493 aa15.46■□□□□ 0.06
CTNNA1-223ENST00000520520 NCAPD3P42695 1498 aa15.39■□□□□ 0.05
CTNNA1-223ENST00000520520 ATAD2BQ9ULI0 1458 aa15.37■□□□□ 0.05
CTNNA1-223ENST00000520520 CUX2O14529 1486 aa15.36■□□□□ 0.05
CTNNA1-223ENST00000520520 SMARCA4P51532 1647 aa15.34■□□□□ 0.05
CTNNA1-223ENST00000520520 NESP48681 1621 aa15.32■□□□□ 0.04
CTNNA1-223ENST00000520520 SMARCA2P51531 1590 aa15.31■□□□□ 0.04
CTNNA1-223ENST00000520520 HMGXB3Q12766 1538 aa15.27■□□□□ 0.04
CTNNA1-223ENST00000520520 BAZ1BQ9UIG0 1483 aaKnown RBP15.26■□□□□ 0.03
CTNNA1-223ENST00000520520 BAZ1AQ9NRL2 1556 aaPredicted RBP15.22■□□□□ 0.03
CTNNA1-223ENST00000520520 MROH2BQ7Z745 1585 aa15.14■□□□□ 0.01
CTNNA1-223ENST00000520520 THOC2Q8NI27 1593 aaKnown RBP15.13■□□□□ 0.01
CTNNA1-223ENST00000520520 KIF21AQ7Z4S6 1674 aa15.11■□□□□ 0.01
CTNNA1-223ENST00000520520 PIAS4Q8N2W9 510 aaPredicted RBP15.1■□□□□ 0.01
CTNNA1-223ENST00000520520 PEG3Q9GZU2 1588 aa15.1■□□□□ 0.01
CTNNA1-223ENST00000520520 LAMC3Q9Y6N6 1575 aa15.1■□□□□ 0.01
CTNNA1-223ENST00000520520 PDS5BQ9NTI5 1447 aa15.03■□□□□ -0
CTNNA1-223ENST00000520520 WIZO95785 1651 aa14.99□□□□□ -0.01
CTNNA1-223ENST00000520520 TRIM41Q8WV44 630 aa14.97□□□□□ -0.01
CTNNA1-223ENST00000520520 CADPSQ9ULU8 1353 aa14.96□□□□□ -0.02
CTNNA1-223ENST00000520520 MRC2Q9UBG0 1479 aa14.92□□□□□ -0.02
CTNNA1-223ENST00000520520 WDR62O43379 1518 aa14.87□□□□□ -0.03
CTNNA1-223ENST00000520520 CEP164Q9UPV0 1460 aa14.86□□□□□ -0.03
CTNNA1-223ENST00000520520 FANCD2Q9BXW9 1451 aa14.82□□□□□ -0.04
CTNNA1-223ENST00000520520 RSF1Q96T23 1441 aaPredicted RBP14.75□□□□□ -0.05
CTNNA1-223ENST00000520520 CFTRP13569 1480 aa14.74□□□□□ -0.05
CTNNA1-223ENST00000520520 TOP2AP11388 1531 aaKnown RBP14.73□□□□□ -0.05
CTNNA1-223ENST00000520520 URB2Q14146 1524 aaKnown RBP14.71□□□□□ -0.06
CTNNA1-223ENST00000520520 OSCARQ8IYS5 282 aa14.69□□□□□ -0.06
CTNNA1-223ENST00000520520 MSH5O43196 834 aa14.68□□□□□ -0.06
CTNNA1-223ENST00000520520 PRDM2Q13029 1718 aa14.61□□□□□ -0.07
CTNNA1-223ENST00000520520 CCDC88BA6NC98 1476 aa14.58□□□□□ -0.08
CTNNA1-223ENST00000520520 ZNF608Q9ULD9 1512 aaPredicted RBP14.58□□□□□ -0.08
CTNNA1-223ENST00000520520 RIMBP3CA6NJZ7 1639 aa14.54□□□□□ -0.08
CTNNA1-223ENST00000520520 RIMBP3BA6NNM3 1639 aa14.54□□□□□ -0.08
CTNNA1-223ENST00000520520 RIMBP3Q9UFD9 1639 aa14.54□□□□□ -0.08
CTNNA1-223ENST00000520520 IFT140Q96RY7 1462 aa14.53□□□□□ -0.08
CTNNA1-223ENST00000520520 TOPBP1Q92547 1522 aa14.52□□□□□ -0.08
CTNNA1-223ENST00000520520 EIF4G3O43432 1585 aaKnown RBP14.48□□□□□ -0.09
CTNNA1-223ENST00000520520 FBLN2P98095 1184 aa14.46□□□□□ -0.09
CTNNA1-223ENST00000520520 ARHGEF11O15085 1522 aa14.46□□□□□ -0.1
CTNNA1-223ENST00000520520 DNMBPQ6XZF7 1577 aa14.44□□□□□ -0.1
CTNNA1-223ENST00000520520 AQRO60306 1485 aaKnown RBP eCLIP14.44□□□□□ -0.12e-10■■■□□ 16
CTNNA1-223ENST00000520520 CYB5RLQ6IPT4 315 aa14.43□□□□□ -0.1
CTNNA1-223ENST00000520520 CHD1O14646 1710 aa14.43□□□□□ -0.1
CTNNA1-223ENST00000520520 SUPT5HO00267 1087 aaKnown RBP14.42□□□□□ -0.1
CTNNA1-223ENST00000520520 ABCC8Q09428 1581 aa14.42□□□□□ -0.1
CTNNA1-223ENST00000520520 PPP4R3CPQ6ZMV5 832 aa14.39□□□□□ -0.11
CTNNA1-223ENST00000520520 TARBP1Q13395 1621 aaKnown RBP14.38□□□□□ -0.11
CTNNA1-223ENST00000520520 TRHP20396 242 aaPredicted RBP14.37□□□□□ -0.11
CTNNA1-223ENST00000520520 POLA1P09884 1462 aaPredicted RBP14.37□□□□□ -0.11
CTNNA1-223ENST00000520520 RAD54L2Q9Y4B4 1467 aa14.37□□□□□ -0.11
CTNNA1-223ENST00000520520 TDRD9Q8NDG6 1382 aaKnown RBP14.34□□□□□ -0.11
CTNNA1-223ENST00000520520 SOGA1O94964 1423 aa14.31□□□□□ -0.12
CTNNA1-223ENST00000520520 ARAP1Q96P48 1450 aa14.31□□□□□ -0.12
CTNNA1-223ENST00000520520 SNAPC4Q5SXM2 1469 aa14.29□□□□□ -0.12
CTNNA1-223ENST00000520520 FGD5Q6ZNL6 1462 aa14.28□□□□□ -0.12
CTNNA1-223ENST00000520520 CHMP7Q8WUX9 453 aaPredicted RBP14.26□□□□□ -0.13
CTNNA1-223ENST00000520520 CUX1P39880 1505 aa14.23□□□□□ -0.13
CTNNA1-223ENST00000520520 KCNA4P22459 653 aa14.2□□□□□ -0.14
CTNNA1-223ENST00000520520 SYNJ1O43426 1573 aa14.19□□□□□ -0.14
CTNNA1-223ENST00000520520 CLASP1Q7Z460 1538 aa14.18□□□□□ -0.14
CTNNA1-223ENST00000520520 GRIN2BQ13224 1484 aa14.18□□□□□ -0.14
CTNNA1-223ENST00000520520 MAGI1Q96QZ7 1491 aaPredicted RBP14.17□□□□□ -0.14
CTNNA1-223ENST00000520520 PBRM1Q86U86 1689 aa14.16□□□□□ -0.14
CTNNA1-223ENST00000520520 WDR97A6NE52 1622 aa14.15□□□□□ -0.14
CTNNA1-223ENST00000520520 SYNJ2O15056 1496 aa14.14□□□□□ -0.15
CTNNA1-223ENST00000520520 MAPK8IP2Q13387 824 aaPredicted RBP14.13□□□□□ -0.15
CTNNA1-223ENST00000520520 GAPVD1Q14C86 1478 aa14.12□□□□□ -0.15
CTNNA1-223ENST00000520520 SCAF1Q9H7N4 1312 aaKnown RBP14.09□□□□□ -0.15
CTNNA1-223ENST00000520520 ABCA5Q8WWZ7 1642 aa14.06□□□□□ -0.16
CTNNA1-223ENST00000520520 ABCA10Q8WWZ4 1543 aa14.05□□□□□ -0.16
CTNNA1-223ENST00000520520 ERCC6L2Q5T890 1561 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms