RNA–Protein interactions for RNA: ENST00000338962.8

LRP1-202, Transcript of LDL receptor related protein 1, humanhuman

TSL 1 (best) BASIC

Gene LRP1, Length 2,169 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRP1-202ENST00000338962 NISCHQ9Y2I1 1504 aa25.03■■□□□ 1.6
LRP1-202ENST00000338962 CCDC180Q9P1Z9 1646 aa22.02■■□□□ 1.12
LRP1-202ENST00000338962 ABCC9O60706 1549 aa21.29■■□□□ 1
LRP1-202ENST00000338962 ZCCHC6Q5VYS8 1495 aaKnown RBP20.91■□□□□ 0.94
LRP1-202ENST00000338962 DCAF8L2P0C7V8 631 aa20.77■□□□□ 0.92
LRP1-202ENST00000338962 DCAF1Q9Y4B6 1507 aa20.75■□□□□ 0.91
LRP1-202ENST00000338962 MYO15BQ96JP2 1530 aa20.75■□□□□ 0.91
LRP1-202ENST00000338962 NACADO15069 1562 aa20.7■□□□□ 0.9
LRP1-202ENST00000338962 RB1CC1Q8TDY2 1594 aa20.61■□□□□ 0.89
LRP1-202ENST00000338962 SCRIBQ14160 1630 aa20.11■□□□□ 0.81
LRP1-202ENST00000338962 SHROOM4Q9ULL8 1493 aa20.06■□□□□ 0.8
LRP1-202ENST00000338962 UNC13AQ9UPW8 1703 aa20.04■□□□□ 0.8
LRP1-202ENST00000338962 PABPN1Q86U42 306 aaKnown RBP eCLIP20■□□□□ 0.79
LRP1-202ENST00000338962 BICRAQ9NZM4 1560 aa19.99■□□□□ 0.79
LRP1-202ENST00000338962 SUPT5HO00267 1087 aaKnown RBP19.47■□□□□ 0.71
LRP1-202ENST00000338962 CECR2Q9BXF3 1484 aa19.46■□□□□ 0.71
LRP1-202ENST00000338962 EIF4G1Q04637 1599 aaKnown RBP19.43■□□□□ 0.7
LRP1-202ENST00000338962 BAZ1AQ9NRL2 1556 aaPredicted RBP19.36■□□□□ 0.69
LRP1-202ENST00000338962 DNAJC5BQ9UF47 199 aa19.34■□□□□ 0.69
LRP1-202ENST00000338962 SMARCA4P51532 1647 aa19.3■□□□□ 0.68
LRP1-202ENST00000338962 MROH2BQ7Z745 1585 aa19.28■□□□□ 0.68
LRP1-202ENST00000338962 CC2D2AQ9P2K1 1620 aa19.25■□□□□ 0.67
LRP1-202ENST00000338962 RSF1Q96T23 1441 aaPredicted RBP19.22■□□□□ 0.67
LRP1-202ENST00000338962 ATAD2BQ9ULI0 1458 aa19.18■□□□□ 0.66
LRP1-202ENST00000338962 PEG3Q9GZU2 1588 aa19.16■□□□□ 0.66
LRP1-202ENST00000338962 NCAPD3P42695 1498 aa19.15■□□□□ 0.66
LRP1-202ENST00000338962 SMARCA2P51531 1590 aa19.14■□□□□ 0.65
LRP1-202ENST00000338962 WIZO95785 1651 aa19.03■□□□□ 0.64
LRP1-202ENST00000338962 HMGXB3Q12766 1538 aa19.03■□□□□ 0.64
LRP1-202ENST00000338962 BAZ1BQ9UIG0 1483 aaKnown RBP19■□□□□ 0.63
LRP1-202ENST00000338962 TOP2AP11388 1531 aaKnown RBP18.88■□□□□ 0.61
LRP1-202ENST00000338962 CHIC1Q5VXU3 224 aa18.74■□□□□ 0.59
LRP1-202ENST00000338962 CCDC88BA6NC98 1476 aa18.7■□□□□ 0.58
LRP1-202ENST00000338962 CADPSQ9ULU8 1353 aa18.61■□□□□ 0.57
LRP1-202ENST00000338962 CFTRP13569 1480 aa18.56■□□□□ 0.56
LRP1-202ENST00000338962 LAMC3Q9Y6N6 1575 aa18.52■□□□□ 0.56
LRP1-202ENST00000338962 NESP48681 1621 aa18.52■□□□□ 0.55
LRP1-202ENST00000338962 PDS5BQ9NTI5 1447 aa18.44■□□□□ 0.54
LRP1-202ENST00000338962 FANCD2Q9BXW9 1451 aa18.35■□□□□ 0.53
LRP1-202ENST00000338962 ERCC6Q03468 1493 aa18.31■□□□□ 0.52
LRP1-202ENST00000338962 CEP164Q9UPV0 1460 aa18.27■□□□□ 0.52
LRP1-202ENST00000338962 TRIM41Q8WV44 630 aa18.25■□□□□ 0.51
LRP1-202ENST00000338962 PRDM2Q13029 1718 aa18.25■□□□□ 0.51
LRP1-202ENST00000338962 KIF21AQ7Z4S6 1674 aa18.22■□□□□ 0.51
LRP1-202ENST00000338962 DNAJC5Q9H3Z4 198 aa18.2■□□□□ 0.5
LRP1-202ENST00000338962 MRC2Q9UBG0 1479 aa18.19■□□□□ 0.5
LRP1-202ENST00000338962 URB2Q14146 1524 aaKnown RBP18.14■□□□□ 0.49
LRP1-202ENST00000338962 THOC2Q8NI27 1593 aaKnown RBP18.14■□□□□ 0.49
LRP1-202ENST00000338962 ABCC8Q09428 1581 aa18.13■□□□□ 0.49
LRP1-202ENST00000338962 WDR62O43379 1518 aa18.11■□□□□ 0.49
LRP1-202ENST00000338962 WRNQ14191 1432 aaPredicted RBP eCLIP18.09■□□□□ 0.49
LRP1-202ENST00000338962 TOPBP1Q92547 1522 aa18.09■□□□□ 0.49
LRP1-202ENST00000338962 LOC105371045A0A1W2PR82 267 aa18.07■□□□□ 0.48
LRP1-202ENST00000338962 DNMBPQ6XZF7 1577 aa18.07■□□□□ 0.48
LRP1-202ENST00000338962 CUX1P39880 1505 aa18.06■□□□□ 0.48
LRP1-202ENST00000338962 CUX2O14529 1486 aa18.05■□□□□ 0.48
LRP1-202ENST00000338962 TOP2BQ02880 1626 aa17.97■□□□□ 0.47
LRP1-202ENST00000338962 FAM9AQ8IZU1 332 aaPredicted RBP17.97■□□□□ 0.47
LRP1-202ENST00000338962 SYNJ1O43426 1573 aa17.97■□□□□ 0.47
LRP1-202ENST00000338962 POLA1P09884 1462 aaPredicted RBP17.96■□□□□ 0.47
LRP1-202ENST00000338962 FGD5Q6ZNL6 1462 aa17.94■□□□□ 0.46
LRP1-202ENST00000338962 BIVM-ERCC5R4GMW8 1640 aa17.94■□□□□ 0.46
LRP1-202ENST00000338962 SOGA1O94964 1423 aa17.91■□□□□ 0.46
LRP1-202ENST00000338962 IFT140Q96RY7 1462 aa17.91■□□□□ 0.46
LRP1-202ENST00000338962 RAD54L2Q9Y4B4 1467 aa17.87■□□□□ 0.45
LRP1-202ENST00000338962 TARBP1Q13395 1621 aaKnown RBP17.84■□□□□ 0.45
LRP1-202ENST00000338962 ABCA10Q8WWZ4 1543 aa17.82■□□□□ 0.44
LRP1-202ENST00000338962 ZNF608Q9ULD9 1512 aaPredicted RBP17.78■□□□□ 0.44
LRP1-202ENST00000338962 TDRD9Q8NDG6 1382 aaKnown RBP17.77■□□□□ 0.44
LRP1-202ENST00000338962 EHMT2Q96KQ7 1210 aa17.74■□□□□ 0.43
LRP1-202ENST00000338962 AQRO60306 1485 aaKnown RBP eCLIP17.74■□□□□ 0.437e-7■■■■□ 23.2
LRP1-202ENST00000338962 WDR97A6NE52 1622 aa17.73■□□□□ 0.43
LRP1-202ENST00000338962 GAPVD1Q14C86 1478 aa17.69■□□□□ 0.42
LRP1-202ENST00000338962 KIF27Q86VH2 1401 aa17.69■□□□□ 0.42
LRP1-202ENST00000338962 EEA1Q15075 1411 aa17.68■□□□□ 0.42
LRP1-202ENST00000338962 EIF4G3O43432 1585 aaKnown RBP17.66■□□□□ 0.42
LRP1-202ENST00000338962 ABCA5Q8WWZ7 1642 aa17.66■□□□□ 0.42
LRP1-202ENST00000338962 GRIN2BQ13224 1484 aa17.65■□□□□ 0.42
LRP1-202ENST00000338962 IGF1RP08069 1367 aa17.63■□□□□ 0.41
LRP1-202ENST00000338962 PCGF6Q9BYE7 350 aa17.63■□□□□ 0.41
LRP1-202ENST00000338962 RUSC2Q8N2Y8 1516 aa17.61■□□□□ 0.41
LRP1-202ENST00000338962 ERICH3Q5RHP9 1530 aa17.59■□□□□ 0.41
LRP1-202ENST00000338962 CSRNP3Q8WYN3 585 aa17.59■□□□□ 0.41
LRP1-202ENST00000338962 MAGI1Q96QZ7 1491 aaPredicted RBP17.57■□□□□ 0.4
LRP1-202ENST00000338962 SNAPC4Q5SXM2 1469 aa17.55■□□□□ 0.4
LRP1-202ENST00000338962 FHAD1B1AJZ9 1412 aa17.52■□□□□ 0.39
LRP1-202ENST00000338962 PBRM1Q86U86 1689 aa17.51■□□□□ 0.39
LRP1-202ENST00000338962 CARMIL1Q5VZK9 1371 aa17.5■□□□□ 0.39
LRP1-202ENST00000338962 TRIM26Q12899 539 aaPredicted RBP17.5■□□□□ 0.39
LRP1-202ENST00000338962 SYNJ2O15056 1496 aa17.5■□□□□ 0.39
LRP1-202ENST00000338962 CHMP7Q8WUX9 453 aaPredicted RBP17.49■□□□□ 0.39
LRP1-202ENST00000338962 GOLGA3Q08378 1498 aa17.48■□□□□ 0.39
LRP1-202ENST00000338962 TNIKQ9UKE5 1360 aa17.47■□□□□ 0.39
LRP1-202ENST00000338962 ADAMTS12P58397 1594 aa17.46■□□□□ 0.39
LRP1-202ENST00000338962 PRXQ9BXM0 1461 aa17.46■□□□□ 0.39
LRP1-202ENST00000338962 UBTFP17480 764 aaKnown RBP17.45■□□□□ 0.38
LRP1-202ENST00000338962 FBLN2P98095 1184 aa17.45■□□□□ 0.38
LRP1-202ENST00000338962 CUL7Q14999 1698 aa17.44■□□□□ 0.38
LRP1-202ENST00000338962 CEP162Q5TB80 1403 aa17.43■□□□□ 0.38
LRP1-202ENST00000338962 KIF21BO75037 1637 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms