RNA–Protein interactions for RNA: ENST00000482195.5

DDX39B-220, Transcript of DExD-box helicase 39B, humanhuman

TSL 2

Gene DDX39B, Length 1,232 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39B-220ENST00000482195 NISCHQ9Y2I1 1504 aa26■■□□□ 1.75
DDX39B-220ENST00000482195 CHIC1Q5VXU3 224 aa25.03■■□□□ 1.6
DDX39B-220ENST00000482195 AEBP2Q6ZN18 517 aaPredicted RBP24.99■■□□□ 1.59
DDX39B-220ENST00000482195 ABCC9O60706 1549 aa23.61■■□□□ 1.37
DDX39B-220ENST00000482195 CCDC180Q9P1Z9 1646 aa23.48■■□□□ 1.35
DDX39B-220ENST00000482195 RB1CC1Q8TDY2 1594 aa22.41■■□□□ 1.18
DDX39B-220ENST00000482195 NACADO15069 1562 aa22.17■■□□□ 1.14
DDX39B-220ENST00000482195 PHF23Q9BUL5 403 aaPredicted RBP22.15■■□□□ 1.14
DDX39B-220ENST00000482195 DNAJC5BQ9UF47 199 aa22.14■■□□□ 1.13
DDX39B-220ENST00000482195 DCAF8L2P0C7V8 631 aa22.06■■□□□ 1.12
DDX39B-220ENST00000482195 UNC13AQ9UPW8 1703 aa21.98■■□□□ 1.11
DDX39B-220ENST00000482195 PABPN1Q86U42 306 aaKnown RBP eCLIP21.91■■□□□ 1.15e-19■□□□□ 10.7
DDX39B-220ENST00000482195 MYO15BQ96JP2 1530 aa21.75■■□□□ 1.07
DDX39B-220ENST00000482195 BICRAQ9NZM4 1560 aa21.71■■□□□ 1.07
DDX39B-220ENST00000482195 ZCCHC6Q5VYS8 1495 aaKnown RBP21.54■■□□□ 1.04
DDX39B-220ENST00000482195 SCRIBQ14160 1630 aa21.44■■□□□ 1.02
DDX39B-220ENST00000482195 DCAF1Q9Y4B6 1507 aa21.43■■□□□ 1.02
DDX39B-220ENST00000482195 SHROOM4Q9ULL8 1493 aa21.39■■□□□ 1.01
DDX39B-220ENST00000482195 CC2D2AQ9P2K1 1620 aa21.33■■□□□ 1
DDX39B-220ENST00000482195 CECR2Q9BXF3 1484 aa21.26■□□□□ 0.99
DDX39B-220ENST00000482195 EIF4G1Q04637 1599 aaKnown RBP21.23■□□□□ 0.99
DDX39B-220ENST00000482195 SENP3Q9H4L4 574 aaPredicted RBP21■□□□□ 0.95
DDX39B-220ENST00000482195 PLPPR3Q6T4P5 718 aa20.59■□□□□ 0.89
DDX39B-220ENST00000482195 DNAJC5Q9H3Z4 198 aa20.44■□□□□ 0.86
DDX39B-220ENST00000482195 ERCC6Q03468 1493 aa20.43■□□□□ 0.86
DDX39B-220ENST00000482195 NCAPD3P42695 1498 aa20.4■□□□□ 0.86
DDX39B-220ENST00000482195 SMARCA4P51532 1647 aa20.38■□□□□ 0.85
DDX39B-220ENST00000482195 CUX2O14529 1486 aa20.37■□□□□ 0.85
DDX39B-220ENST00000482195 ATAD2BQ9ULI0 1458 aa20.37■□□□□ 0.85
DDX39B-220ENST00000482195 SMARCA2P51531 1590 aa20.35■□□□□ 0.85
DDX39B-220ENST00000482195 HMGXB3Q12766 1538 aa20.32■□□□□ 0.84
DDX39B-220ENST00000482195 BAZ1AQ9NRL2 1556 aaPredicted RBP20.23■□□□□ 0.83
DDX39B-220ENST00000482195 NESP48681 1621 aa20.23■□□□□ 0.83
DDX39B-220ENST00000482195 BAZ1BQ9UIG0 1483 aaKnown RBP20.23■□□□□ 0.83
DDX39B-220ENST00000482195 PEG3Q9GZU2 1588 aa20.11■□□□□ 0.81
DDX39B-220ENST00000482195 THOC2Q8NI27 1593 aaKnown RBP20.08■□□□□ 0.81
DDX39B-220ENST00000482195 LAMC3Q9Y6N6 1575 aa20.06■□□□□ 0.8
DDX39B-220ENST00000482195 KIF21AQ7Z4S6 1674 aa20.06■□□□□ 0.8
DDX39B-220ENST00000482195 MROH2BQ7Z745 1585 aa20.05■□□□□ 0.8
DDX39B-220ENST00000482195 PDS5BQ9NTI5 1447 aa19.92■□□□□ 0.78
DDX39B-220ENST00000482195 WIZO95785 1651 aa19.87■□□□□ 0.77
DDX39B-220ENST00000482195 CADPSQ9ULU8 1353 aa19.8■□□□□ 0.76
DDX39B-220ENST00000482195 MRC2Q9UBG0 1479 aa19.79■□□□□ 0.76
DDX39B-220ENST00000482195 WDR62O43379 1518 aa19.74■□□□□ 0.75
DDX39B-220ENST00000482195 CEP164Q9UPV0 1460 aa19.7■□□□□ 0.74
DDX39B-220ENST00000482195 FANCD2Q9BXW9 1451 aa19.64■□□□□ 0.73
DDX39B-220ENST00000482195 TRIM41Q8WV44 630 aa19.63■□□□□ 0.73
DDX39B-220ENST00000482195 TOP2AP11388 1531 aaKnown RBP19.58■□□□□ 0.73
DDX39B-220ENST00000482195 CFTRP13569 1480 aa19.54■□□□□ 0.72
DDX39B-220ENST00000482195 PRDM2Q13029 1718 aa19.54■□□□□ 0.72
DDX39B-220ENST00000482195 RSF1Q96T23 1441 aaPredicted RBP19.53■□□□□ 0.72
DDX39B-220ENST00000482195 URB2Q14146 1524 aaKnown RBP19.48■□□□□ 0.71
DDX39B-220ENST00000482195 FOXD1Q16676 465 aa19.47■□□□□ 0.71
DDX39B-220ENST00000482195 OSCARQ8IYS5 282 aa19.37■□□□□ 0.69
DDX39B-220ENST00000482195 ADRA2BP18089 450 aa19.35■□□□□ 0.69
DDX39B-220ENST00000482195 PPP6R1Q9UPN7 881 aa19.32■□□□□ 0.68
DDX39B-220ENST00000482195 CCDC88BA6NC98 1476 aa19.31■□□□□ 0.68
DDX39B-220ENST00000482195 IFT140Q96RY7 1462 aa19.28■□□□□ 0.68
DDX39B-220ENST00000482195 ZNF608Q9ULD9 1512 aaPredicted RBP19.27■□□□□ 0.68
DDX39B-220ENST00000482195 RIMBP3CA6NJZ7 1639 aa19.25■□□□□ 0.67
DDX39B-220ENST00000482195 RIMBP3BA6NNM3 1639 aa19.25■□□□□ 0.67
DDX39B-220ENST00000482195 RIMBP3Q9UFD9 1639 aa19.25■□□□□ 0.67
DDX39B-220ENST00000482195 TOPBP1Q92547 1522 aa19.25■□□□□ 0.67
DDX39B-220ENST00000482195 EIF4G3O43432 1585 aaKnown RBP19.23■□□□□ 0.67
DDX39B-220ENST00000482195 DNMBPQ6XZF7 1577 aa19.19■□□□□ 0.66
DDX39B-220ENST00000482195 ABCC8Q09428 1581 aa19.16■□□□□ 0.66
DDX39B-220ENST00000482195 CHD1O14646 1710 aa19.16■□□□□ 0.66
DDX39B-220ENST00000482195 ARHGEF11O15085 1522 aa19.14■□□□□ 0.65
DDX39B-220ENST00000482195 TARBP1Q13395 1621 aaKnown RBP19.09■□□□□ 0.65
DDX39B-220ENST00000482195 AQRO60306 1485 aaKnown RBP eCLIP19.06■□□□□ 0.641e-7■■■■□ 24.6
DDX39B-220ENST00000482195 POLA1P09884 1462 aaPredicted RBP19.03■□□□□ 0.64
DDX39B-220ENST00000482195 FBLN2P98095 1184 aa19.01■□□□□ 0.63
DDX39B-220ENST00000482195 RAD54L2Q9Y4B4 1467 aa18.97■□□□□ 0.63
DDX39B-220ENST00000482195 CYB5RLQ6IPT4 315 aa18.96■□□□□ 0.63
DDX39B-220ENST00000482195 ARAP1Q96P48 1450 aa18.93■□□□□ 0.62
DDX39B-220ENST00000482195 SOGA1O94964 1423 aa18.92■□□□□ 0.62
DDX39B-220ENST00000482195 FGD5Q6ZNL6 1462 aa18.92■□□□□ 0.62
DDX39B-220ENST00000482195 SNAPC4Q5SXM2 1469 aa18.91■□□□□ 0.62
DDX39B-220ENST00000482195 TDRD9Q8NDG6 1382 aaKnown RBP18.91■□□□□ 0.62
DDX39B-220ENST00000482195 WDR97A6NE52 1622 aa18.89■□□□□ 0.62
DDX39B-220ENST00000482195 CUX1P39880 1505 aa18.87■□□□□ 0.61
DDX39B-220ENST00000482195 TRHP20396 242 aaPredicted RBP18.85■□□□□ 0.61
DDX39B-220ENST00000482195 SYNJ1O43426 1573 aa18.85■□□□□ 0.61
DDX39B-220ENST00000482195 PBRM1Q86U86 1689 aa18.84■□□□□ 0.61
DDX39B-220ENST00000482195 CLASP1Q7Z460 1538 aa18.83■□□□□ 0.6
DDX39B-220ENST00000482195 MAGI1Q96QZ7 1491 aaPredicted RBP18.82■□□□□ 0.6
DDX39B-220ENST00000482195 CHMP7Q8WUX9 453 aaPredicted RBP18.8■□□□□ 0.6
DDX39B-220ENST00000482195 GRIN2BQ13224 1484 aa18.79■□□□□ 0.6
DDX39B-220ENST00000482195 SYNJ2O15056 1496 aa18.76■□□□□ 0.59
DDX39B-220ENST00000482195 GAPVD1Q14C86 1478 aa18.71■□□□□ 0.59
DDX39B-220ENST00000482195 ABCA5Q8WWZ7 1642 aa18.7■□□□□ 0.58
DDX39B-220ENST00000482195 ABCA10Q8WWZ4 1543 aa18.66■□□□□ 0.58
DDX39B-220ENST00000482195 SUPT5HO00267 1087 aaKnown RBP18.64■□□□□ 0.57
DDX39B-220ENST00000482195 KCNA4P22459 653 aa18.64■□□□□ 0.57
DDX39B-220ENST00000482195 ADAMTS12P58397 1594 aa18.59■□□□□ 0.57
DDX39B-220ENST00000482195 GRIN2AQ12879 1464 aa18.57■□□□□ 0.56
DDX39B-220ENST00000482195 BIVM-ERCC5R4GMW8 1640 aa18.56■□□□□ 0.56
DDX39B-220ENST00000482195 WRNQ14191 1432 aaPredicted RBP eCLIP18.55■□□□□ 0.56
DDX39B-220ENST00000482195 TOP2BQ02880 1626 aa18.54■□□□□ 0.56
DDX39B-220ENST00000482195 CEP170Q5SW79 1584 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms