RNA–Protein interactions for RNA: ENST00000481879.1

KDM1A-204, Transcript of lysine demethylase 1A, humanhuman

TSL 3

Gene KDM1A, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KDM1A-204ENST00000481879 AEBP2Q6ZN18 517 aaPredicted RBP21.02■□□□□ 0.96
KDM1A-204ENST00000481879 CHIC1Q5VXU3 224 aa19.59■□□□□ 0.73
KDM1A-204ENST00000481879 SENP3Q9H4L4 574 aaPredicted RBP18.03■□□□□ 0.48
KDM1A-204ENST00000481879 PHF23Q9BUL5 403 aaPredicted RBP17.69■□□□□ 0.42
KDM1A-204ENST00000481879 POTEDQ86YR6 584 aa17.09■□□□□ 0.33
KDM1A-204ENST00000481879 FOXD1Q16676 465 aa16.92■□□□□ 0.3
KDM1A-204ENST00000481879 MSH5O43196 834 aa16.11■□□□□ 0.17
KDM1A-204ENST00000481879 PIAS4Q8N2W9 510 aaPredicted RBP15.6■□□□□ 0.09
KDM1A-204ENST00000481879 PPP6R1Q9UPN7 881 aa15.22■□□□□ 0.03
KDM1A-204ENST00000481879 ADRA2BP18089 450 aa15.12■□□□□ 0.01
KDM1A-204ENST00000481879 PLPPR3Q6T4P5 718 aa14.96□□□□□ -0.01
KDM1A-204ENST00000481879 CACNB1Q02641 598 aaPredicted RBP14.31□□□□□ -0.12
KDM1A-204ENST00000481879 DMRT2Q9Y5R5 561 aa14.18□□□□□ -0.14
KDM1A-204ENST00000481879 MAPK8IP2Q13387 824 aaPredicted RBP14.13□□□□□ -0.15
KDM1A-204ENST00000481879 SCAF1Q9H7N4 1312 aaKnown RBP13.81□□□□□ -0.2
KDM1A-204ENST00000481879 RNF39Q9H2S5 420 aa13.69□□□□□ -0.22
KDM1A-204ENST00000481879 DCAF8L1A6NGE4 600 aa13.62□□□□□ -0.23
KDM1A-204ENST00000481879 C1QBPQ07021 282 aaKnown RBP13.44□□□□□ -0.26
KDM1A-204ENST00000481879 HOXD11P31277 338 aaPredicted RBP13.35□□□□□ -0.27
KDM1A-204ENST00000481879 POTEHQ6S545 545 aa13.23□□□□□ -0.29
KDM1A-204ENST00000481879 PPP4R3CPQ6ZMV5 832 aa13.08□□□□□ -0.32
KDM1A-204ENST00000481879 DNAJC5BQ9UF47 199 aa13.04□□□□□ -0.32
KDM1A-204ENST00000481879 RNF216Q9NWF9 866 aaPredicted RBP13.03□□□□□ -0.32
KDM1A-204ENST00000481879 CNKSR2Q8WXI2 1034 aa12.94□□□□□ -0.34
KDM1A-204ENST00000481879 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.7□□□□□ -0.386e-7■□□□□ 9.5
KDM1A-204ENST00000481879 NCBP3Q53F19 620 aaKnown RBP12.6□□□□□ -0.39
KDM1A-204ENST00000481879 DSG3P32926 999 aa12.56□□□□□ -0.4
KDM1A-204ENST00000481879 CAPN15O75808 1086 aa12.43□□□□□ -0.42
KDM1A-204ENST00000481879 SPINK5Q9NQ38 1064 aaPredicted RBP12.43□□□□□ -0.42
KDM1A-204ENST00000481879 NPM3O75607 178 aaKnown RBP12.39□□□□□ -0.43
KDM1A-204ENST00000481879 U3KPZ7 1027 aaPredicted RBP12.37□□□□□ -0.43
KDM1A-204ENST00000481879 KCNA4P22459 653 aa12.16□□□□□ -0.46
KDM1A-204ENST00000481879 ABCB7O75027 752 aa12.07□□□□□ -0.48
KDM1A-204ENST00000481879 CHRDL2Q6WN34 429 aa12.05□□□□□ -0.48
KDM1A-204ENST00000481879 TRHP20396 242 aaPredicted RBP12.04□□□□□ -0.48
KDM1A-204ENST00000481879 SP7Q8TDD2 431 aaPredicted RBP12.03□□□□□ -0.48
KDM1A-204ENST00000481879 RBM42Q9BTD8 480 aaKnown RBP11.99□□□□□ -0.49
KDM1A-204ENST00000481879 ZNF219Q9P2Y4 722 aaPredicted RBP11.98□□□□□ -0.49
KDM1A-204ENST00000481879 APLP2Q06481 763 aa11.9□□□□□ -0.5
KDM1A-204ENST00000481879 SLC4A2P04920 1241 aa11.82□□□□□ -0.52
KDM1A-204ENST00000481879 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.71□□□□□ -0.53
KDM1A-204ENST00000481879 HNRNPUL2Q1KMD3 747 aaKnown RBP11.71□□□□□ -0.53
KDM1A-204ENST00000481879 SAMD1Q6SPF0 538 aaPredicted RBP11.62□□□□□ -0.55
KDM1A-204ENST00000481879 HAX1O00165 279 aa11.59□□□□□ -0.55
KDM1A-204ENST00000481879 PIP4P2Q8N4L2 257 aa11.59□□□□□ -0.55
KDM1A-204ENST00000481879 POLA2Q14181 598 aa11.54□□□□□ -0.56
KDM1A-204ENST00000481879 AKT1S1Q96B36 256 aa11.54□□□□□ -0.56
KDM1A-204ENST00000481879 SLC4A1APQ9BWU0 796 aaKnown RBP11.5□□□□□ -0.57
KDM1A-204ENST00000481879 MYCNP04198 464 aaPredicted RBP11.46□□□□□ -0.57
KDM1A-204ENST00000481879 REM2Q8IYK8 340 aaPredicted RBP11.45□□□□□ -0.58
KDM1A-204ENST00000481879 EVX2Q03828 476 aa11.42□□□□□ -0.58
KDM1A-204ENST00000481879 FXR2P51116 673 aaKnown RBP eCLIP11.4□□□□□ -0.58
KDM1A-204ENST00000481879 FOXD4L1Q9NU39 408 aa11.35□□□□□ -0.59
KDM1A-204ENST00000481879 PITPNM1O00562 1244 aa11.33□□□□□ -0.6
KDM1A-204ENST00000481879 PLSCR2Q9NRY7 297 aa11.3□□□□□ -0.6
KDM1A-204ENST00000481879 LHX8Q68G74 356 aa11.27□□□□□ -0.61
KDM1A-204ENST00000481879 ZBTB12Q9Y330 459 aaPredicted RBP11.22□□□□□ -0.61
KDM1A-204ENST00000481879 OSCARQ8IYS5 282 aa11.2□□□□□ -0.62
KDM1A-204ENST00000481879 ATF5Q9Y2D1 282 aaPredicted RBP11.19□□□□□ -0.62
KDM1A-204ENST00000481879 ZBTB22O15209 634 aa11.16□□□□□ -0.62
KDM1A-204ENST00000481879 GABBR2O75899 941 aa11.09□□□□□ -0.63
KDM1A-204ENST00000481879 C19orf67A6NJJ6 358 aa11.06□□□□□ -0.64
KDM1A-204ENST00000481879 PRKAR2AP13861 404 aaKnown RBP11.03□□□□□ -0.64
KDM1A-204ENST00000481879 ATXN8OSP0DMR3 200 aa11.02□□□□□ -0.65
KDM1A-204ENST00000481879 POTEIP0CG38 1075 aa10.87□□□□□ -0.67
KDM1A-204ENST00000481879 CLEC11AQ9Y240 323 aa10.85□□□□□ -0.67
KDM1A-204ENST00000481879 SPDYE2BA6NHP3 402 aa10.83□□□□□ -0.68
KDM1A-204ENST00000481879 SPDYE6P0CI01 402 aa10.83□□□□□ -0.68
KDM1A-204ENST00000481879 SPDYE2Q495Y8 402 aa10.83□□□□□ -0.68
KDM1A-204ENST00000481879 SPDYE1Q8NFV5 336 aaPredicted RBP10.82□□□□□ -0.68
KDM1A-204ENST00000481879 FBLN2P98095 1184 aa10.78□□□□□ -0.68
KDM1A-204ENST00000481879 CHADLQ6NUI6 762 aa10.74□□□□□ -0.69
KDM1A-204ENST00000481879 CSRNP3Q8WYN3 585 aa10.69□□□□□ -0.7
KDM1A-204ENST00000481879 MKRN4PQ13434 485 aaPredicted RBP10.67□□□□□ -0.7
KDM1A-204ENST00000481879 POTEMA6NI47 508 aa10.66□□□□□ -0.7
KDM1A-204ENST00000481879 CD44P16070 742 aaKnown RBP10.63□□□□□ -0.71
KDM1A-204ENST00000481879 CLCN6P51797 869 aa10.63□□□□□ -0.71
KDM1A-204ENST00000481879 OTUD5Q96G74 571 aa10.61□□□□□ -0.71
KDM1A-204ENST00000481879 DCBLD2Q96PD2 775 aa10.61□□□□□ -0.71
KDM1A-204ENST00000481879 POTEGQ6S5H5 508 aa10.6□□□□□ -0.71
KDM1A-204ENST00000481879 SSUH2Q9Y2M2 353 aa10.6□□□□□ -0.71
KDM1A-204ENST00000481879 ZNF692Q9BU19 519 aaPredicted RBP10.58□□□□□ -0.72
KDM1A-204ENST00000481879 PRR29P0C7W0 189 aa10.56□□□□□ -0.72
KDM1A-204ENST00000481879 EHMT2Q96KQ7 1210 aa10.55□□□□□ -0.72
KDM1A-204ENST00000481879 PCDH10Q9P2E7 1040 aa10.51□□□□□ -0.73
KDM1A-204ENST00000481879 POTEB2H3BUK9 544 aa10.5□□□□□ -0.73
KDM1A-204ENST00000481879 FARP1Q9Y4F1 1045 aaPredicted RBP10.5□□□□□ -0.73
KDM1A-204ENST00000481879 ZNF579Q8NAF0 562 aaKnown RBP10.43□□□□□ -0.74
KDM1A-204ENST00000481879 PABPN1Q86U42 306 aaKnown RBP eCLIP10.41□□□□□ -0.74
KDM1A-204ENST00000481879 GALR2O43603 387 aaPredicted RBP10.37□□□□□ -0.75
KDM1A-204ENST00000481879 ZRANB1Q9UGI0 708 aa10.35□□□□□ -0.75
KDM1A-204ENST00000481879 LCE2DQ5TA82 110 aaPredicted RBP10.28□□□□□ -0.76
KDM1A-204ENST00000481879 PELP1Q8IZL8 1130 aaKnown RBP10.25□□□□□ -0.77
KDM1A-204ENST00000481879 POTEJP0CG39 1038 aa10.22□□□□□ -0.77
KDM1A-204ENST00000481879 SPDYE4A6NLX3 237 aa10.2□□□□□ -0.78
KDM1A-204ENST00000481879 FAM163AQ96GL9 167 aaPredicted RBP10.19□□□□□ -0.78
KDM1A-204ENST00000481879 MAMSTRQ6ZN01 415 aa10.16□□□□□ -0.78
KDM1A-204ENST00000481879 METRNQ9UJH8 293 aa10.16□□□□□ -0.78
KDM1A-204ENST00000481879 PHF12Q96QT6 1004 aa10.15□□□□□ -0.78
KDM1A-204ENST00000481879 STAG3Q9UJ98 1225 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms