Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 SND1-210ENST00000483503 603 ntTSL 513.17□□□□□ -0.33e-6■■■■□ 21.3
DDX55Q8NHQ9 UBOX5-202ENST00000348031 4469 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.313e-6■■■■□ 21.3
DDX55Q8NHQ9 ARHGEF11-201ENST00000361409 5788 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.323e-6■■■■□ 21.3
DDX55Q8NHQ9 HCN3-204ENST00000496230 3245 ntTSL 212.95□□□□□ -0.343e-6■■■■□ 21.3
DDX55Q8NHQ9 SRRT-213ENST00000611405 2905 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.357e-9■■■■□ 21.3
DDX55Q8NHQ9 USP10-219ENST00000570191 2717 ntTSL 2 BASIC12.82□□□□□ -0.363e-6■■■■□ 21.3
DDX55Q8NHQ9 PAFAH1B2-204ENST00000527958 4198 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.377e-9■■■■□ 21.3
DDX55Q8NHQ9 UBOX5-201ENST00000217173 4631 ntAPPRIS P4 TSL 1 (best) BASIC12.66□□□□□ -0.383e-6■■■■□ 21.3
DDX55Q8NHQ9 PRR3-204ENST00000481741 1944 ntTSL 212.63□□□□□ -0.393e-6■■■■□ 21.3
DDX55Q8NHQ9 CEP85-202ENST00000451429 4061 ntTSL 2 BASIC12.29□□□□□ -0.443e-6■■■■□ 21.3
DDX55Q8NHQ9 MRPL55-204ENST00000348259 661 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.463e-6■■■■□ 21.3
DDX55Q8NHQ9 SLC1A4-203ENST00000480594 5789 ntTSL 212.11□□□□□ -0.473e-6■■■■□ 21.3
DDX55Q8NHQ9 CEP85-203ENST00000453146 2821 ntTSL 1 (best)11.83□□□□□ -0.523e-6■■■■□ 21.3
DDX55Q8NHQ9 SGPL1-202ENST00000373202 5745 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.527e-9■■■■□ 21.3
DDX55Q8NHQ9 KPNB1-201ENST00000290158 6139 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.593e-6■■■■□ 21.3
DDX55Q8NHQ9 MRPL55-216ENST00000366744 726 ntAPPRIS P1 TSL 3 BASIC11.33□□□□□ -0.63e-6■■■■□ 21.3
DDX55Q8NHQ9 NUP35-209ENST00000479162 2828 ntTSL 211.23□□□□□ -0.613e-6■■■■□ 21.3
DDX55Q8NHQ9 PRELID1-204ENST00000503853 608 ntTSL 211.15□□□□□ -0.623e-6■■■■□ 21.3
DDX55Q8NHQ9 HIF1A-203ENST00000394997 3922 ntAPPRIS ALT1 TSL 1 (best) BASIC11.11□□□□□ -0.637e-9■■■■□ 21.3
DDX55Q8NHQ9 SRRM2-209ENST00000572278 711 ntTSL 210.96□□□□□ -0.653e-6■■■■□ 21.3
DDX55Q8NHQ9 KIF3B-201ENST00000375712 6103 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.683e-6■■■■□ 21.3
DDX55Q8NHQ9 TMEM97-203ENST00000582113 493 ntTSL 2 BASIC10.8□□□□□ -0.683e-6■■■■□ 21.3
DDX55Q8NHQ9 HIF1A-202ENST00000337138 3919 ntAPPRIS P2 TSL 1 (best) BASIC10.57□□□□□ -0.727e-9■■■■□ 21.3
DDX55Q8NHQ9 ST5-213ENST00000526757 3019 ntAPPRIS ALT2 TSL 1 (best) BASIC10.52□□□□□ -0.733e-6■■■■□ 21.3
DDX55Q8NHQ9 LPCAT3-202ENST00000535021 802 ntTSL 410.34□□□□□ -0.753e-6■■■■□ 21.3
DDX55Q8NHQ9 CDK19-201ENST00000323817 6067 ntTSL 1 (best) BASIC9.86□□□□□ -0.833e-6■■■■□ 21.3
DDX55Q8NHQ9 CEP85-206ENST00000476272 3507 ntTSL 29.84□□□□□ -0.833e-6■■■■□ 21.3
DDX55Q8NHQ9 KPNB1-211ENST00000582097 2347 ntTSL 29.71□□□□□ -0.863e-6■■■■□ 21.3
DDX55Q8NHQ9 ST5-237ENST00000530991 3396 ntTSL 2 BASIC9.44□□□□□ -0.93e-6■■■■□ 21.3
DDX55Q8NHQ9 KPNB1-210ENST00000580573 556 ntTSL 39.19□□□□□ -0.943e-6■■■■□ 21.3
DDX55Q8NHQ9 KPNB1-202ENST00000535458 3163 ntTSL 2 BASIC9.16□□□□□ -0.943e-6■■■■□ 21.3
DDX55Q8NHQ9 PRR3-203ENST00000470703 3429 ntTSL 28.95□□□□□ -0.983e-6■■■■□ 21.3
DDX55Q8NHQ9 C7orf49-204ENST00000459937 2576 ntTSL 1 (best)8.64□□□□□ -1.033e-6■■■■□ 21.3
DDX55Q8NHQ9 CDK19-203ENST00000413605 6007 ntTSL 1 (best) BASIC8.54□□□□□ -1.043e-6■■■■□ 21.3
DDX55Q8NHQ9 USP10-217ENST00000569925 572 ntTSL 38.16□□□□□ -1.13e-6■■■■□ 21.3
DDX55Q8NHQ9 CEP85-201ENST00000252992 3935 ntAPPRIS P3 TSL 1 (best) BASIC8.12□□□□□ -1.113e-6■■■■□ 21.3
DDX55Q8NHQ9 SRRM2-215ENST00000573498 994 ntTSL 37.93□□□□□ -1.143e-6■■■■□ 21.3
DDX55Q8NHQ9 KPNB1-203ENST00000540627 2989 ntTSL 2 BASIC7.47□□□□□ -1.213e-6■■■■□ 21.3
DDX55Q8NHQ9 SRRT-203ENST00000445337 446 ntTSL 37.31□□□□□ -1.247e-9■■■■□ 21.3
DDX55Q8NHQ9 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.333e-6■■■■□ 21.3
DDX55Q8NHQ9 USP10-214ENST00000567526 330 ntTSL 36.66□□□□□ -1.343e-6■■■■□ 21.3
DDX55Q8NHQ9 PNKD-206ENST00000472650 472 ntTSL 26□□□□□ -1.453e-6■■■■□ 21.3
DDX55Q8NHQ9 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC5.7□□□□□ -1.57e-9■■■■□ 21.3
DDX55Q8NHQ9 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC5.31□□□□□ -1.567e-9■■■■□ 21.3
DDX55Q8NHQ9 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.693e-6■■■■□ 21.3
DDX55Q8NHQ9 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC4.04□□□□□ -1.767e-9■■■■□ 21.3
DDX55Q8NHQ9 EMC2-204ENST00000519450 2736 ntTSL 23.64□□□□□ -1.833e-6■■■■□ 21.3
DDX55Q8NHQ9 COX20-204ENST00000464757 2616 ntTSL 22.92□□□□□ -1.943e-6■■■■□ 21.3
DDX55Q8NHQ9 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.29□□□□□ -2.27e-9■■■■□ 21.3
DDX55Q8NHQ9 NME3-203ENST00000563367 891 ntTSL 334.55■■■■□ 3.122e-7■■■■□ 21.2
DDX55Q8NHQ9 NME3-209ENST00000566600 913 ntTSL 231.43■■■□□ 2.622e-7■■■■□ 21.2
DDX55Q8NHQ9 NME3-202ENST00000561637 1014 ntTSL 231.27■■■□□ 2.62e-7■■■■□ 21.2
DDX55Q8NHQ9 NME3-208ENST00000565379 911 ntTSL 231.25■■■□□ 2.592e-7■■■■□ 21.2
DDX55Q8NHQ9 NME3-206ENST00000564252 599 ntTSL 229.8■■■□□ 2.362e-7■■■■□ 21.2
DDX55Q8NHQ9 NME3-210ENST00000567271 752 ntTSL 226.23■■□□□ 1.792e-7■■■■□ 21.2
DDX55Q8NHQ9 NME3-204ENST00000563498 920 ntTSL 2 BASIC23.54■■□□□ 1.362e-7■■■■□ 21.2
DDX55Q8NHQ9 NME3-207ENST00000564628 811 ntTSL 523.54■■□□□ 1.362e-7■■■■□ 21.2
DDX55Q8NHQ9 NME3-205ENST00000563854 583 ntTSL 521.84■■□□□ 1.092e-7■■■■□ 21.2
DDX55Q8NHQ9 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.772e-7■■■■□ 21.2
DDX55Q8NHQ9 NME3-211ENST00000568561 813 ntTSL 1 (best)19.5■□□□□ 0.712e-7■■■■□ 21.2
DDX55Q8NHQ9 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC28.28■■■□□ 2.123e-13■■■■□ 21.2
DDX55Q8NHQ9 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC21.22■□□□□ 0.992e-6■■■■□ 21.2
DDX55Q8NHQ9 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.34■□□□□ 0.532e-6■■■■□ 21.2
DDX55Q8NHQ9 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.32e-6■■■■□ 21.2
DDX55Q8NHQ9 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.212e-6■■■■□ 21.2
DDX55Q8NHQ9 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC16.1■□□□□ 0.172e-6■■■■□ 21.2
DDX55Q8NHQ9 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.752e-7■■■■□ 21.2
DDX55Q8NHQ9 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.372e-7■■■■□ 21.2
DDX55Q8NHQ9 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.769e-8■■■■□ 21.1
DDX55Q8NHQ9 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.25e-7■■■■□ 21.1
DDX55Q8NHQ9 IGSF1-201ENST00000361420 4378 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.665e-7■■■■□ 21.1
DDX55Q8NHQ9 IGSF1-206ENST00000370910 4406 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.765e-7■■■■□ 21.1
DDX55Q8NHQ9 IGSF1-205ENST00000370904 5413 ntAPPRIS ALT2 TSL 2 BASIC9.72□□□□□ -0.855e-7■■■■□ 21.1
DDX55Q8NHQ9 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC29■■■□□ 2.232e-8■■■■□ 21.1
DDX55Q8NHQ9 PEMT-206ENST00000435340 960 ntTSL 5 BASIC28.52■■■□□ 2.162e-8■■■■□ 21.1
DDX55Q8NHQ9 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC28.49■■■□□ 2.152e-8■■■■□ 21.1
DDX55Q8NHQ9 PEMT-212ENST00000580147 708 ntTSL 328.37■■■□□ 2.132e-8■■■■□ 21.1
DDX55Q8NHQ9 IL32-224ENST00000534748 580 ntTSL 323.56■■□□□ 1.362e-8■■■■□ 21.1
DDX55Q8NHQ9 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.796e-16■■■■□ 21.1
DDX55Q8NHQ9 IL32-220ENST00000532086 930 ntTSL 1 (best)19.92■□□□□ 0.782e-8■■■■□ 21.1
DDX55Q8NHQ9 PEMT-211ENST00000490392 673 ntTSL 319.43■□□□□ 0.72e-8■■■■□ 21.1
DDX55Q8NHQ9 PEMT-210ENST00000484838 803 ntTSL 219.32■□□□□ 0.682e-8■■■■□ 21.1
DDX55Q8NHQ9 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.572e-8■■■■□ 21.1
DDX55Q8NHQ9 PEMT-209ENST00000477595 430 ntTSL 316.74■□□□□ 0.272e-8■■■■□ 21.1
DDX55Q8NHQ9 PEMT-204ENST00000395783 1008 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.192e-8■■■■□ 21.1
DDX55Q8NHQ9 PEMT-213ENST00000582268 383 ntTSL 214.62□□□□□ -0.072e-8■■■■□ 21.1
DDX55Q8NHQ9 MADD-216ENST00000469699 924 ntTSL 1 (best)12.85□□□□□ -0.352e-8■■■■□ 21.1
DDX55Q8NHQ9 SMOC1-202ENST00000381280 3666 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.456e-16■■■■□ 21.1
DDX55Q8NHQ9 MADD-205ENST00000395344 4988 ntAPPRIS ALT2 TSL 2 BASIC11.05□□□□□ -0.642e-8■■■■□ 21.1
DDX55Q8NHQ9 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.628e-7■■■■□ 21.1
DDX55Q8NHQ9 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.288e-7■■■■□ 21.1
DDX55Q8NHQ9 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.832e-8■■■■□ 21.1
DDX55Q8NHQ9 AP1S1-203ENST00000443943 741 ntTSL 325.97■■□□□ 1.752e-8■■■■□ 21.1
DDX55Q8NHQ9 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.2■□□□□ 0.822e-6■■■■□ 21
DDX55Q8NHQ9 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.2■□□□□ 0.822e-6■■■■□ 21
DDX55Q8NHQ9 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.752e-6■■■■□ 21
DDX55Q8NHQ9 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC18.47■□□□□ 0.552e-6■■■■□ 21
DDX55Q8NHQ9 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC17.64■□□□□ 0.422e-6■■■■□ 21
DDX55Q8NHQ9 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC17.24■□□□□ 0.352e-6■■■■□ 21
DDX55Q8NHQ9 ATP6V0E2-206ENST00000471877 1766 ntTSL 216.65■□□□□ 0.262e-6■■■■□ 21
Retrieved 100 of 15,504 protein–RNA pairs in 159.8 ms