RNA–Protein interactions for RNA: ENST00000394997.5

HIF1A-203, Transcript of hypoxia inducible factor 1 subunit alpha, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HIF1A, Length 3,922 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF1A-203ENST00000394997 NISCHQ9Y2I1 1504 aa23.11■■□□□ 1.29
HIF1A-203ENST00000394997 CCDC180Q9P1Z9 1646 aa20.09■□□□□ 0.81
HIF1A-203ENST00000394997 ZCCHC6Q5VYS8 1495 aaKnown RBP19.63■□□□□ 0.73
HIF1A-203ENST00000394997 DCAF1Q9Y4B6 1507 aa19.23■□□□□ 0.67
HIF1A-203ENST00000394997 MYO15BQ96JP2 1530 aa18.8■□□□□ 0.6
HIF1A-203ENST00000394997 SHROOM4Q9ULL8 1493 aa18.73■□□□□ 0.59
HIF1A-203ENST00000394997 ABCC9O60706 1549 aa18.53■□□□□ 0.56
HIF1A-203ENST00000394997 NACADO15069 1562 aa18.35■□□□□ 0.53
HIF1A-203ENST00000394997 SCRIBQ14160 1630 aa18.33■□□□□ 0.52
HIF1A-203ENST00000394997 UNC13AQ9UPW8 1703 aa18.32■□□□□ 0.52
HIF1A-203ENST00000394997 RSF1Q96T23 1441 aaPredicted RBP18.07■□□□□ 0.48
HIF1A-203ENST00000394997 SUPT5HO00267 1087 aaKnown RBP18.04■□□□□ 0.48
HIF1A-203ENST00000394997 EIF4G1Q04637 1599 aaKnown RBP18.01■□□□□ 0.47
HIF1A-203ENST00000394997 RB1CC1Q8TDY2 1594 aa17.99■□□□□ 0.47
HIF1A-203ENST00000394997 CECR2Q9BXF3 1484 aa17.94■□□□□ 0.46
HIF1A-203ENST00000394997 DCAF8L2P0C7V8 631 aa17.93■□□□□ 0.46
HIF1A-203ENST00000394997 MROH2BQ7Z745 1585 aa17.93■□□□□ 0.46
HIF1A-203ENST00000394997 CHIC1Q5VXU3 224 aa17.9■□□□□ 0.46
HIF1A-203ENST00000394997 BICRAQ9NZM4 1560 aa17.89■□□□□ 0.46
HIF1A-203ENST00000394997 WIZO95785 1651 aa17.89■□□□□ 0.46
HIF1A-203ENST00000394997 BAZ1AQ9NRL2 1556 aaPredicted RBP17.84■□□□□ 0.45
HIF1A-203ENST00000394997 SMARCA4P51532 1647 aa17.74■□□□□ 0.43
HIF1A-203ENST00000394997 PEG3Q9GZU2 1588 aa17.67■□□□□ 0.42
HIF1A-203ENST00000394997 TOP2AP11388 1531 aaKnown RBP17.59■□□□□ 0.41
HIF1A-203ENST00000394997 SMARCA2P51531 1590 aa17.56■□□□□ 0.4
HIF1A-203ENST00000394997 CCDC88BA6NC98 1476 aa17.36■□□□□ 0.37
HIF1A-203ENST00000394997 ABCC8Q09428 1581 aa17.22■□□□□ 0.35
HIF1A-203ENST00000394997 ATAD2BQ9ULI0 1458 aa17.17■□□□□ 0.34
HIF1A-203ENST00000394997 LOC105371045A0A1W2PR82 267 aa17.16■□□□□ 0.34
HIF1A-203ENST00000394997 SYNJ1O43426 1573 aa17.08■□□□□ 0.33
HIF1A-203ENST00000394997 PRDM2Q13029 1718 aa17.07■□□□□ 0.32
HIF1A-203ENST00000394997 HMGXB3Q12766 1538 aa17.06■□□□□ 0.32
HIF1A-203ENST00000394997 BIVM-ERCC5R4GMW8 1640 aa17.02■□□□□ 0.32
HIF1A-203ENST00000394997 PABPN1Q86U42 306 aaKnown RBP eCLIP16.98■□□□□ 0.31
HIF1A-203ENST00000394997 RUSC2Q8N2Y8 1516 aa16.94■□□□□ 0.3
HIF1A-203ENST00000394997 NCAPD3P42695 1498 aa16.93■□□□□ 0.3
HIF1A-203ENST00000394997 TOP2BQ02880 1626 aa16.92■□□□□ 0.3
HIF1A-203ENST00000394997 BAZ1BQ9UIG0 1483 aaKnown RBP16.91■□□□□ 0.3
HIF1A-203ENST00000394997 TRIM41Q8WV44 630 aa16.9■□□□□ 0.3
HIF1A-203ENST00000394997 SOGA1O94964 1423 aa16.89■□□□□ 0.29
HIF1A-203ENST00000394997 KIF21BO75037 1637 aa16.87■□□□□ 0.29
HIF1A-203ENST00000394997 HRCP23327 699 aa16.79■□□□□ 0.28
HIF1A-203ENST00000394997 WRNQ14191 1432 aaPredicted RBP eCLIP16.78■□□□□ 0.28
HIF1A-203ENST00000394997 CUX1P39880 1505 aa16.74■□□□□ 0.27
HIF1A-203ENST00000394997 CFTRP13569 1480 aa16.73■□□□□ 0.27
HIF1A-203ENST00000394997 EEA1Q15075 1411 aa16.72■□□□□ 0.27
HIF1A-203ENST00000394997 CC2D2AQ9P2K1 1620 aa16.66■□□□□ 0.26
HIF1A-203ENST00000394997 PCGF6Q9BYE7 350 aa16.66■□□□□ 0.26
HIF1A-203ENST00000394997 TNIKQ9UKE5 1360 aa16.64■□□□□ 0.25
HIF1A-203ENST00000394997 CEP162Q5TB80 1403 aa16.6■□□□□ 0.25
HIF1A-203ENST00000394997 TRIM26Q12899 539 aaPredicted RBP16.59■□□□□ 0.25
HIF1A-203ENST00000394997 ERICH3Q5RHP9 1530 aa16.57■□□□□ 0.24
HIF1A-203ENST00000394997 PRXQ9BXM0 1461 aa16.57■□□□□ 0.24
HIF1A-203ENST00000394997 WDR97A6NE52 1622 aa16.56■□□□□ 0.24
HIF1A-203ENST00000394997 GOLGA3Q08378 1498 aa16.56■□□□□ 0.24
HIF1A-203ENST00000394997 FAM9AQ8IZU1 332 aaPredicted RBP16.56■□□□□ 0.24
HIF1A-203ENST00000394997 RAPGEF2Q9Y4G8 1499 aa16.53■□□□□ 0.24
HIF1A-203ENST00000394997 CEP164Q9UPV0 1460 aa16.51■□□□□ 0.23
HIF1A-203ENST00000394997 CSRNP3Q8WYN3 585 aa16.44■□□□□ 0.22
HIF1A-203ENST00000394997 PPARGC1BQ86YN6 1023 aaKnown RBP16.41■□□□□ 0.22
HIF1A-203ENST00000394997 ARAP1Q96P48 1450 aa16.4■□□□□ 0.22
HIF1A-203ENST00000394997 CADPSQ9ULU8 1353 aa16.35■□□□□ 0.21
HIF1A-203ENST00000394997 DNMBPQ6XZF7 1577 aa16.33■□□□□ 0.2
HIF1A-203ENST00000394997 CLIP1P30622 1438 aa16.32■□□□□ 0.2
HIF1A-203ENST00000394997 KIF21AQ7Z4S6 1674 aa16.3■□□□□ 0.2
HIF1A-203ENST00000394997 VPS8Q8N3P4 1428 aa16.3■□□□□ 0.2
HIF1A-203ENST00000394997 ABCA5Q8WWZ7 1642 aa16.29■□□□□ 0.2
HIF1A-203ENST00000394997 LAMC3Q9Y6N6 1575 aa16.29■□□□□ 0.2
HIF1A-203ENST00000394997 FGD5Q6ZNL6 1462 aa16.28■□□□□ 0.2
HIF1A-203ENST00000394997 LRRIQ1Q96JM4 1722 aa16.27■□□□□ 0.19
HIF1A-203ENST00000394997 NESP48681 1621 aa16.26■□□□□ 0.19
HIF1A-203ENST00000394997 ABCA10Q8WWZ4 1543 aa16.23■□□□□ 0.19
HIF1A-203ENST00000394997 ARHGAP35Q9NRY4 1499 aa16.23■□□□□ 0.19
HIF1A-203ENST00000394997 CTTNBP2Q8WZ74 1663 aa16.23■□□□□ 0.19
HIF1A-203ENST00000394997 EHMT2Q96KQ7 1210 aa16.23■□□□□ 0.19
HIF1A-203ENST00000394997 TOPBP1Q92547 1522 aa16.22■□□□□ 0.19
HIF1A-203ENST00000394997 FANCD2Q9BXW9 1451 aa16.22■□□□□ 0.19
HIF1A-203ENST00000394997 TARBP1Q13395 1621 aaKnown RBP16.22■□□□□ 0.19
HIF1A-203ENST00000394997 URB2Q14146 1524 aaKnown RBP16.22■□□□□ 0.19
HIF1A-203ENST00000394997 IGF1RP08069 1367 aa16.2■□□□□ 0.18
HIF1A-203ENST00000394997 CFAP43Q8NDM7 1665 aa16.2■□□□□ 0.18
HIF1A-203ENST00000394997 POLA1P09884 1462 aaPredicted RBP16.19■□□□□ 0.18
HIF1A-203ENST00000394997 KIF27Q86VH2 1401 aa16.18■□□□□ 0.18
HIF1A-203ENST00000394997 CUL7Q14999 1698 aa16.18■□□□□ 0.18
HIF1A-203ENST00000394997 MAP3K1Q13233 1512 aa16.12■□□□□ 0.17
HIF1A-203ENST00000394997 SAMD9Q5K651 1589 aa16.11■□□□□ 0.17
HIF1A-203ENST00000394997 DNAJC5BQ9UF47 199 aa16.1■□□□□ 0.17
HIF1A-203ENST00000394997 CUX2O14529 1486 aa16.1■□□□□ 0.17
HIF1A-203ENST00000394997 PBRM1Q86U86 1689 aa16.09■□□□□ 0.17
HIF1A-203ENST00000394997 RAD54L2Q9Y4B4 1467 aa16.09■□□□□ 0.17
HIF1A-203ENST00000394997 TIAM1Q13009 1591 aa16.06■□□□□ 0.16
HIF1A-203ENST00000394997 RRBP1Q9P2E9 1410 aaKnown RBP16.04■□□□□ 0.16
HIF1A-203ENST00000394997 PCF11O94913 1555 aaKnown RBP16.04■□□□□ 0.16
HIF1A-203ENST00000394997 SNAPC4Q5SXM2 1469 aa15.98■□□□□ 0.15
HIF1A-203ENST00000394997 UBTFP17480 764 aaKnown RBP15.96■□□□□ 0.15
HIF1A-203ENST00000394997 EFCAB5A4FU69 1503 aa15.95■□□□□ 0.14
HIF1A-203ENST00000394997 ZEB1P37275 1124 aaPredicted RBP15.93■□□□□ 0.14
HIF1A-203ENST00000394997 CARMIL1Q5VZK9 1371 aa15.93■□□□□ 0.14
HIF1A-203ENST00000394997 WDR62O43379 1518 aa15.93■□□□□ 0.14
HIF1A-203ENST00000394997 AQRO60306 1485 aaKnown RBP eCLIP15.92■□□□□ 0.143e-6■■□□□ 12.6
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms