RNA–Protein interactions for RNA: ENST00000323441.10

HIF1A-201, Transcript of hypoxia inducible factor 1 subunit alpha, humanhuman

TSL 1 (best) BASIC

Gene HIF1A, Length 3,555 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF1A-201ENST00000323441 NISCHQ9Y2I1 1504 aa8.48□□□□□ -1.05
HIF1A-201ENST00000323441 ABCC9O60706 1549 aa8.02□□□□□ -1.12
HIF1A-201ENST00000323441 CCDC180Q9P1Z9 1646 aa7.96□□□□□ -1.13
HIF1A-201ENST00000323441 DNAJC5BQ9UF47 199 aa7.92□□□□□ -1.14
HIF1A-201ENST00000323441 RB1CC1Q8TDY2 1594 aa7.64□□□□□ -1.19
HIF1A-201ENST00000323441 UNC13AQ9UPW8 1703 aa7.61□□□□□ -1.19
HIF1A-201ENST00000323441 DNAJC5Q9H3Z4 198 aa7.6□□□□□ -1.19
HIF1A-201ENST00000323441 NACADO15069 1562 aa7.52□□□□□ -1.2
HIF1A-201ENST00000323441 BICRAQ9NZM4 1560 aa7.52□□□□□ -1.21
HIF1A-201ENST00000323441 SHROOM4Q9ULL8 1493 aa7.45□□□□□ -1.22
HIF1A-201ENST00000323441 MYO15BQ96JP2 1530 aa7.41□□□□□ -1.22
HIF1A-201ENST00000323441 CC2D2AQ9P2K1 1620 aa7.39□□□□□ -1.23
HIF1A-201ENST00000323441 CECR2Q9BXF3 1484 aa7.33□□□□□ -1.24
HIF1A-201ENST00000323441 EIF4G1Q04637 1599 aaKnown RBP7.28□□□□□ -1.24
HIF1A-201ENST00000323441 PABPN1Q86U42 306 aaKnown RBP eCLIP7.28□□□□□ -1.24
HIF1A-201ENST00000323441 CUX2O14529 1486 aa7.27□□□□□ -1.25
HIF1A-201ENST00000323441 DCAF1Q9Y4B6 1507 aa7.13□□□□□ -1.27
HIF1A-201ENST00000323441 THOC2Q8NI27 1593 aaKnown RBP7.04□□□□□ -1.28
HIF1A-201ENST00000323441 SCRIBQ14160 1630 aa6.98□□□□□ -1.29
HIF1A-201ENST00000323441 ZCCHC6Q5VYS8 1495 aaKnown RBP6.98□□□□□ -1.29
HIF1A-201ENST00000323441 NCAPD3P42695 1498 aa6.92□□□□□ -1.3
HIF1A-201ENST00000323441 ERCC6Q03468 1493 aa6.92□□□□□ -1.3
HIF1A-201ENST00000323441 HMGXB3Q12766 1538 aa6.89□□□□□ -1.31
HIF1A-201ENST00000323441 KIF21AQ7Z4S6 1674 aa6.87□□□□□ -1.31
HIF1A-201ENST00000323441 LAMC3Q9Y6N6 1575 aa6.86□□□□□ -1.31
HIF1A-201ENST00000323441 AEBP2Q6ZN18 517 aaPredicted RBP6.85□□□□□ -1.31
HIF1A-201ENST00000323441 BAZ1AQ9NRL2 1556 aaPredicted RBP6.85□□□□□ -1.31
HIF1A-201ENST00000323441 TRIM41Q8WV44 630 aa6.84□□□□□ -1.31
HIF1A-201ENST00000323441 NESP48681 1621 aa6.83□□□□□ -1.32
HIF1A-201ENST00000323441 DCAF8L2P0C7V8 631 aa6.82□□□□□ -1.32
HIF1A-201ENST00000323441 CHIC1Q5VXU3 224 aa6.82□□□□□ -1.32
HIF1A-201ENST00000323441 WDR62O43379 1518 aa6.81□□□□□ -1.32
HIF1A-201ENST00000323441 RIMBP3CA6NJZ7 1639 aa6.81□□□□□ -1.32
HIF1A-201ENST00000323441 RIMBP3BA6NNM3 1639 aa6.81□□□□□ -1.32
HIF1A-201ENST00000323441 RIMBP3Q9UFD9 1639 aa6.81□□□□□ -1.32
HIF1A-201ENST00000323441 PEG3Q9GZU2 1588 aa6.8□□□□□ -1.32
HIF1A-201ENST00000323441 ATAD2BQ9ULI0 1458 aa6.79□□□□□ -1.32
HIF1A-201ENST00000323441 SMARCA2P51531 1590 aa6.78□□□□□ -1.32
HIF1A-201ENST00000323441 SMARCA4P51532 1647 aa6.74□□□□□ -1.33
HIF1A-201ENST00000323441 MRC2Q9UBG0 1479 aa6.72□□□□□ -1.33
HIF1A-201ENST00000323441 PDS5BQ9NTI5 1447 aa6.69□□□□□ -1.34
HIF1A-201ENST00000323441 ARHGEF11O15085 1522 aa6.69□□□□□ -1.34
HIF1A-201ENST00000323441 BAZ1BQ9UIG0 1483 aaKnown RBP6.64□□□□□ -1.35
HIF1A-201ENST00000323441 OSCARQ8IYS5 282 aa6.64□□□□□ -1.35
HIF1A-201ENST00000323441 ARAP1Q96P48 1450 aa6.6□□□□□ -1.35
HIF1A-201ENST00000323441 PRDM2Q13029 1718 aa6.59□□□□□ -1.35
HIF1A-201ENST00000323441 CADPSQ9ULU8 1353 aa6.59□□□□□ -1.35
HIF1A-201ENST00000323441 RSF1Q96T23 1441 aaPredicted RBP6.56□□□□□ -1.36
HIF1A-201ENST00000323441 CEP164Q9UPV0 1460 aa6.56□□□□□ -1.36
HIF1A-201ENST00000323441 CHD1O14646 1710 aa6.56□□□□□ -1.36
HIF1A-201ENST00000323441 URB2Q14146 1524 aaKnown RBP6.55□□□□□ -1.36
HIF1A-201ENST00000323441 CLASP1Q7Z460 1538 aa6.52□□□□□ -1.37
HIF1A-201ENST00000323441 FANCD2Q9BXW9 1451 aa6.51□□□□□ -1.37
HIF1A-201ENST00000323441 EIF4G3O43432 1585 aaKnown RBP6.51□□□□□ -1.37
HIF1A-201ENST00000323441 CFTRP13569 1480 aa6.5□□□□□ -1.37
HIF1A-201ENST00000323441 IFT140Q96RY7 1462 aa6.49□□□□□ -1.37
HIF1A-201ENST00000323441 MROH2BQ7Z745 1585 aa6.49□□□□□ -1.37
HIF1A-201ENST00000323441 TARBP1Q13395 1621 aaKnown RBP6.47□□□□□ -1.37
HIF1A-201ENST00000323441 ZNF608Q9ULD9 1512 aaPredicted RBP6.47□□□□□ -1.37
HIF1A-201ENST00000323441 KIF13AQ9H1H9 1805 aa6.47□□□□□ -1.37
HIF1A-201ENST00000323441 WDR97A6NE52 1622 aa6.46□□□□□ -1.38
HIF1A-201ENST00000323441 ILDR1Q86SU0 546 aaPredicted RBP6.45□□□□□ -1.38
HIF1A-201ENST00000323441 CYB5RLQ6IPT4 315 aa6.41□□□□□ -1.38
HIF1A-201ENST00000323441 WIZO95785 1651 aa6.4□□□□□ -1.38
HIF1A-201ENST00000323441 TRHP20396 242 aaPredicted RBP6.39□□□□□ -1.39
HIF1A-201ENST00000323441 TOPBP1Q92547 1522 aa6.39□□□□□ -1.39
HIF1A-201ENST00000323441 ERCC6L2Q5T890 1561 aa6.38□□□□□ -1.39
HIF1A-201ENST00000323441 DNMBPQ6XZF7 1577 aa6.37□□□□□ -1.39
HIF1A-201ENST00000323441 SYNJ1O43426 1573 aa6.37□□□□□ -1.39
HIF1A-201ENST00000323441 ABCC8Q09428 1581 aa6.37□□□□□ -1.39
HIF1A-201ENST00000323441 SHROOM2Q13796 1616 aa6.34□□□□□ -1.39
HIF1A-201ENST00000323441 TOP2AP11388 1531 aaKnown RBP6.34□□□□□ -1.4
HIF1A-201ENST00000323441 GAPVD1Q14C86 1478 aa6.31□□□□□ -1.4
HIF1A-201ENST00000323441 MAGI1Q96QZ7 1491 aaPredicted RBP6.31□□□□□ -1.4
HIF1A-201ENST00000323441 KDM4FA0A1W2PPD8 638 aa6.3□□□□□ -1.4
HIF1A-201ENST00000323441 AQRO60306 1485 aaKnown RBP eCLIP6.3□□□□□ -1.43e-6■■□□□ 12.6
HIF1A-201ENST00000323441 PBRM1Q86U86 1689 aa6.3□□□□□ -1.4
HIF1A-201ENST00000323441 HECW2Q9P2P5 1572 aa6.29□□□□□ -1.4
HIF1A-201ENST00000323441 DIP2BQ9P265 1576 aa6.28□□□□□ -1.4
HIF1A-201ENST00000323441 POLA1P09884 1462 aaPredicted RBP6.28□□□□□ -1.4
HIF1A-201ENST00000323441 MAPKBP1O60336 1514 aa6.28□□□□□ -1.4
HIF1A-201ENST00000323441 SNAPC4Q5SXM2 1469 aa6.28□□□□□ -1.4
HIF1A-201ENST00000323441 SYNJ2O15056 1496 aa6.27□□□□□ -1.41
HIF1A-201ENST00000323441 ABCC10Q5T3U5 1492 aa6.25□□□□□ -1.41
HIF1A-201ENST00000323441 KDM6BO15054 1643 aa6.25□□□□□ -1.41
HIF1A-201ENST00000323441 PPRC1Q5VV67 1664 aaKnown RBP6.25□□□□□ -1.41
HIF1A-201ENST00000323441 CEP170Q5SW79 1584 aa6.24□□□□□ -1.41
HIF1A-201ENST00000323441 ABCA5Q8WWZ7 1642 aa6.24□□□□□ -1.41
HIF1A-201ENST00000323441 GRIN2BQ13224 1484 aa6.22□□□□□ -1.41
HIF1A-201ENST00000323441 NUP160Q12769 1436 aa6.21□□□□□ -1.42
HIF1A-201ENST00000323441 ADGRL1O94910 1474 aa6.19□□□□□ -1.42
HIF1A-201ENST00000323441 FBXO41Q8TF61 875 aa6.19□□□□□ -1.42
HIF1A-201ENST00000323441 RAD54L2Q9Y4B4 1467 aa6.19□□□□□ -1.42
HIF1A-201ENST00000323441 CCDC88BA6NC98 1476 aa6.19□□□□□ -1.42
HIF1A-201ENST00000323441 ADCY10Q96PN6 1610 aa6.18□□□□□ -1.42
HIF1A-201ENST00000323441 GLI2P10070 1586 aa6.18□□□□□ -1.42
HIF1A-201ENST00000323441 ADAMTS12P58397 1594 aa6.18□□□□□ -1.42
HIF1A-201ENST00000323441 GRIN2AQ12879 1464 aa6.16□□□□□ -1.42
HIF1A-201ENST00000323441 SOGA1O94964 1423 aa6.16□□□□□ -1.42
HIF1A-201ENST00000323441 FGD5Q6ZNL6 1462 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms