RNA–Protein interactions for RNA: ENST00000428494.6

GHDC-203, Transcript of GH3 domain containing, humanhuman

TSL 5 BASIC

Gene GHDC, Length 2,518 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GHDC-203ENST00000428494 NISCHQ9Y2I1 1504 aa31.69■■■□□ 2.66
GHDC-203ENST00000428494 SHROOM4Q9ULL8 1493 aa27.57■■■□□ 2
GHDC-203ENST00000428494 SUPT5HO00267 1087 aaKnown RBP27.19■■□□□ 1.94
GHDC-203ENST00000428494 ZCCHC6Q5VYS8 1495 aaKnown RBP26.83■■□□□ 1.89
GHDC-203ENST00000428494 CCDC180Q9P1Z9 1646 aa26.61■■□□□ 1.85
GHDC-203ENST00000428494 DCAF8L2P0C7V8 631 aa26.57■■□□□ 1.84
GHDC-203ENST00000428494 CHIC1Q5VXU3 224 aa26.47■■□□□ 1.83
GHDC-203ENST00000428494 MYO15BQ96JP2 1530 aa26.47■■□□□ 1.83
GHDC-203ENST00000428494 HRCP23327 699 aa26.16■■□□□ 1.78
GHDC-203ENST00000428494 PCGF6Q9BYE7 350 aa26.07■■□□□ 1.76
GHDC-203ENST00000428494 LOC105371045A0A1W2PR82 267 aa25.85■■□□□ 1.73
GHDC-203ENST00000428494 DCAF1Q9Y4B6 1507 aa25.83■■□□□ 1.73
GHDC-203ENST00000428494 PPARGC1BQ86YN6 1023 aaKnown RBP25.77■■□□□ 1.72
GHDC-203ENST00000428494 ABCC9O60706 1549 aa25.35■■□□□ 1.65
GHDC-203ENST00000428494 TRIM26Q12899 539 aaPredicted RBP25.35■■□□□ 1.65
GHDC-203ENST00000428494 RSF1Q96T23 1441 aaPredicted RBP25.28■■□□□ 1.64
GHDC-203ENST00000428494 SCRIBQ14160 1630 aa25.27■■□□□ 1.64
GHDC-203ENST00000428494 TRIM41Q8WV44 630 aa25.19■■□□□ 1.62
GHDC-203ENST00000428494 FAM9AQ8IZU1 332 aaPredicted RBP25.16■■□□□ 1.62
GHDC-203ENST00000428494 EHMT2Q96KQ7 1210 aa25.07■■□□□ 1.6
GHDC-203ENST00000428494 RB1CC1Q8TDY2 1594 aa25.07■■□□□ 1.6
GHDC-203ENST00000428494 CECR2Q9BXF3 1484 aa24.85■■□□□ 1.57
GHDC-203ENST00000428494 ZEB1P37275 1124 aaPredicted RBP24.82■■□□□ 1.56
GHDC-203ENST00000428494 MROH2BQ7Z745 1585 aa24.74■■□□□ 1.55
GHDC-203ENST00000428494 PELP1Q8IZL8 1130 aaKnown RBP24.68■■□□□ 1.54
GHDC-203ENST00000428494 WIZO95785 1651 aa24.63■■□□□ 1.53
GHDC-203ENST00000428494 NACADO15069 1562 aa24.6■■□□□ 1.53
GHDC-203ENST00000428494 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.44■■□□□ 1.5
GHDC-203ENST00000428494 SCAF1Q9H7N4 1312 aaKnown RBP24.38■■□□□ 1.49
GHDC-203ENST00000428494 BAZ1AQ9NRL2 1556 aaPredicted RBP24.35■■□□□ 1.49
GHDC-203ENST00000428494 CCER1Q8TC90 406 aaPredicted RBP24.31■■□□□ 1.48
GHDC-203ENST00000428494 TTBK1Q5TCY1 1321 aaPredicted RBP24.3■■□□□ 1.48
GHDC-203ENST00000428494 EIF4G1Q04637 1599 aaKnown RBP24.3■■□□□ 1.48
GHDC-203ENST00000428494 ABCC8Q09428 1581 aa24.25■■□□□ 1.47
GHDC-203ENST00000428494 CCDC88BA6NC98 1476 aa24.22■■□□□ 1.47
GHDC-203ENST00000428494 TOP2AP11388 1531 aaKnown RBP24.11■■□□□ 1.45
GHDC-203ENST00000428494 SOGA1O94964 1423 aa24.11■■□□□ 1.45
GHDC-203ENST00000428494 CEP162Q5TB80 1403 aa24.07■■□□□ 1.44
GHDC-203ENST00000428494 SMARCA4P51532 1647 aa24.05■■□□□ 1.44
GHDC-203ENST00000428494 SMARCA2P51531 1590 aa24.05■■□□□ 1.44
GHDC-203ENST00000428494 WRNQ14191 1432 aaPredicted RBP eCLIP24.02■■□□□ 1.44
GHDC-203ENST00000428494 RUSC2Q8N2Y8 1516 aa24■■□□□ 1.43
GHDC-203ENST00000428494 NEUROD1Q13562 356 aa24■■□□□ 1.43
GHDC-203ENST00000428494 MYT1Q01538 1121 aa23.99■■□□□ 1.43
GHDC-203ENST00000428494 DIEXFQ68CQ4 756 aaKnown RBP23.99■■□□□ 1.43
GHDC-203ENST00000428494 UBTFP17480 764 aaKnown RBP23.99■■□□□ 1.43
GHDC-203ENST00000428494 ACIN1Q9UKV3 1341 aaKnown RBP23.97■■□□□ 1.43
GHDC-203ENST00000428494 CSRNP3Q8WYN3 585 aa23.97■■□□□ 1.43
GHDC-203ENST00000428494 TNIKQ9UKE5 1360 aa23.95■■□□□ 1.43
GHDC-203ENST00000428494 UNC13AQ9UPW8 1703 aa23.89■■□□□ 1.42
GHDC-203ENST00000428494 PABPN1Q86U42 306 aaKnown RBP eCLIP23.85■■□□□ 1.41
GHDC-203ENST00000428494 EEA1Q15075 1411 aa23.78■■□□□ 1.4
GHDC-203ENST00000428494 GTF3C3Q9Y5Q9 886 aa23.78■■□□□ 1.4
GHDC-203ENST00000428494 GOLGA3Q08378 1498 aa23.74■■□□□ 1.39
GHDC-203ENST00000428494 CENPBP07199 599 aaPredicted RBP23.72■■□□□ 1.39
GHDC-203ENST00000428494 HNRNPUL2Q1KMD3 747 aaKnown RBP23.7■■□□□ 1.38
GHDC-203ENST00000428494 ZNF316A6NFI3 1004 aaPredicted RBP23.69■■□□□ 1.38
GHDC-203ENST00000428494 RANGAP1P46060 587 aaPredicted RBP23.61■■□□□ 1.37
GHDC-203ENST00000428494 SYNJ1O43426 1573 aa23.59■■□□□ 1.37
GHDC-203ENST00000428494 BICRAQ9NZM4 1560 aa23.59■■□□□ 1.37
GHDC-203ENST00000428494 YTHDC1Q96MU7 727 aaKnown RBP23.58■■□□□ 1.36
GHDC-203ENST00000428494 CEP164Q9UPV0 1460 aa23.56■■□□□ 1.36
GHDC-203ENST00000428494 CLIP1P30622 1438 aa23.55■■□□□ 1.36
GHDC-203ENST00000428494 MIER1Q8N108 512 aa23.49■■□□□ 1.35
GHDC-203ENST00000428494 PEG3Q9GZU2 1588 aa23.48■■□□□ 1.35
GHDC-203ENST00000428494 KIF21BO75037 1637 aa23.47■■□□□ 1.35
GHDC-203ENST00000428494 RAPGEF2Q9Y4G8 1499 aa23.46■■□□□ 1.35
GHDC-203ENST00000428494 APLP2Q06481 763 aa23.44■■□□□ 1.34
GHDC-203ENST00000428494 VPS8Q8N3P4 1428 aa23.44■■□□□ 1.34
GHDC-203ENST00000428494 ATAD2BQ9ULI0 1458 aa23.41■■□□□ 1.34
GHDC-203ENST00000428494 BAZ1BQ9UIG0 1483 aaKnown RBP23.36■■□□□ 1.33
GHDC-203ENST00000428494 KANK4Q5T7N3 995 aaPredicted RBP23.2■■□□□ 1.3
GHDC-203ENST00000428494 TOP2BQ02880 1626 aa23.19■■□□□ 1.3
GHDC-203ENST00000428494 DHX57Q6P158 1386 aaKnown RBP23.13■■□□□ 1.29
GHDC-203ENST00000428494 ARAP1Q96P48 1450 aa23.11■■□□□ 1.29
GHDC-203ENST00000428494 PRXQ9BXM0 1461 aa23.1■■□□□ 1.29
GHDC-203ENST00000428494 BIVM-ERCC5R4GMW8 1640 aa23.06■■□□□ 1.28
GHDC-203ENST00000428494 ERICH3Q5RHP9 1530 aa23.03■■□□□ 1.28
GHDC-203ENST00000428494 CLSPNQ9HAW4 1339 aa23.02■■□□□ 1.28
GHDC-203ENST00000428494 ITGAEP38570 1179 aa23■■□□□ 1.27
GHDC-203ENST00000428494 CUX1P39880 1505 aa22.98■■□□□ 1.27
GHDC-203ENST00000428494 KIF27Q86VH2 1401 aa22.92■■□□□ 1.26
GHDC-203ENST00000428494 RRBP1Q9P2E9 1410 aaKnown RBP22.92■■□□□ 1.26
GHDC-203ENST00000428494 ARHGAP35Q9NRY4 1499 aa22.88■■□□□ 1.25
GHDC-203ENST00000428494 CCNB3Q8WWL7 1395 aa22.87■■□□□ 1.25
GHDC-203ENST00000428494 NCAPD3P42695 1498 aa22.84■■□□□ 1.25
GHDC-203ENST00000428494 SUPT16HQ9Y5B9 1047 aaKnown RBP22.79■■□□□ 1.24
GHDC-203ENST00000428494 HMGXB3Q12766 1538 aa22.78■■□□□ 1.24
GHDC-203ENST00000428494 CUX2O14529 1486 aa22.78■■□□□ 1.24
GHDC-203ENST00000428494 CFTRP13569 1480 aa22.77■■□□□ 1.24
GHDC-203ENST00000428494 KCNH8Q96L42 1107 aa22.77■■□□□ 1.24
GHDC-203ENST00000428494 RAB3GAP2Q9H2M9 1393 aa22.76■■□□□ 1.23
GHDC-203ENST00000428494 DNAJC5BQ9UF47 199 aa22.74■■□□□ 1.23
GHDC-203ENST00000428494 IGF1RP08069 1367 aa22.73■■□□□ 1.23
GHDC-203ENST00000428494 MAPKBP1O60336 1514 aa22.67■■□□□ 1.22
GHDC-203ENST00000428494 P3H3Q8IVL6 736 aa22.66■■□□□ 1.22
GHDC-203ENST00000428494 SIN3AQ96ST3 1273 aa22.66■■□□□ 1.22
GHDC-203ENST00000428494 FAM50AQ14320 339 aaKnown RBP22.64■■□□□ 1.21
GHDC-203ENST00000428494 ATP1B4Q9UN42 357 aaPredicted RBP22.62■■□□□ 1.21
GHDC-203ENST00000428494 TIAM1Q13009 1591 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms