RNA–Protein interactions for RNA: ENST00000539097.2

HIF1A-204, Transcript of hypoxia inducible factor 1 subunit alpha, humanhuman

TSL 1 (best) BASIC

Gene HIF1A, Length 3,956 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF1A-204ENST00000539097 AEBP2Q6ZN18 517 aaPredicted RBP5.32□□□□□ -1.56
HIF1A-204ENST00000539097 POTEDQ86YR6 584 aa5.02□□□□□ -1.61
HIF1A-204ENST00000539097 CHIC1Q5VXU3 224 aa4.8□□□□□ -1.64
HIF1A-204ENST00000539097 SENP3Q9H4L4 574 aaPredicted RBP4.54□□□□□ -1.68
HIF1A-204ENST00000539097 MSH5O43196 834 aa4.36□□□□□ -1.71
HIF1A-204ENST00000539097 DNAJC5BQ9UF47 199 aa4.27□□□□□ -1.73
HIF1A-204ENST00000539097 FOXD1Q16676 465 aa4.22□□□□□ -1.73
HIF1A-204ENST00000539097 PHF23Q9BUL5 403 aaPredicted RBP4.17□□□□□ -1.74
HIF1A-204ENST00000539097 POTEHQ6S545 545 aa3.75□□□□□ -1.81
HIF1A-204ENST00000539097 DMRT2Q9Y5R5 561 aa3.72□□□□□ -1.81
HIF1A-204ENST00000539097 RNF39Q9H2S5 420 aa3.71□□□□□ -1.82
HIF1A-204ENST00000539097 CACNB1Q02641 598 aaPredicted RBP3.66□□□□□ -1.82
HIF1A-204ENST00000539097 C1QBPQ07021 282 aaKnown RBP3.59□□□□□ -1.83
HIF1A-204ENST00000539097 HOXD11P31277 338 aaPredicted RBP3.58□□□□□ -1.84
HIF1A-204ENST00000539097 PLPPR3Q6T4P5 718 aa3.58□□□□□ -1.84
HIF1A-204ENST00000539097 PIAS4Q8N2W9 510 aaPredicted RBP3.49□□□□□ -1.85
HIF1A-204ENST00000539097 ADRA2BP18089 450 aa3.47□□□□□ -1.85
HIF1A-204ENST00000539097 PPP6R1Q9UPN7 881 aa3.45□□□□□ -1.86
HIF1A-204ENST00000539097 PCDH10Q9P2E7 1040 aa3.39□□□□□ -1.87
HIF1A-204ENST00000539097 SP7Q8TDD2 431 aaPredicted RBP3.32□□□□□ -1.88
HIF1A-204ENST00000539097 KCNA4P22459 653 aa3.31□□□□□ -1.88
HIF1A-204ENST00000539097 EHMT2Q96KQ7 1210 aa3.23□□□□□ -1.89
HIF1A-204ENST00000539097 SCAF1Q9H7N4 1312 aaKnown RBP3.22□□□□□ -1.89
HIF1A-204ENST00000539097 NCBP3Q53F19 620 aaKnown RBP3.22□□□□□ -1.89
HIF1A-204ENST00000539097 RNF216Q9NWF9 866 aaPredicted RBP3.21□□□□□ -1.9
HIF1A-204ENST00000539097 CLCN6P51797 869 aa3.16□□□□□ -1.9
HIF1A-204ENST00000539097 DSG3P32926 999 aa3.14□□□□□ -1.91
HIF1A-204ENST00000539097 CSRNP3Q8WYN3 585 aa3.14□□□□□ -1.91
HIF1A-204ENST00000539097 ZBTB22O15209 634 aa3.14□□□□□ -1.91
HIF1A-204ENST00000539097 PPP4R3CPQ6ZMV5 832 aa3.11□□□□□ -1.91
HIF1A-204ENST00000539097 FXR2P51116 673 aaKnown RBP eCLIP3.09□□□□□ -1.914e-8■■□□□ 11.4
HIF1A-204ENST00000539097 CNKSR2Q8WXI2 1034 aa3.09□□□□□ -1.91
HIF1A-204ENST00000539097 NPM3O75607 178 aaKnown RBP3.08□□□□□ -1.92
HIF1A-204ENST00000539097 MAPK8IP2Q13387 824 aaPredicted RBP3.08□□□□□ -1.92
HIF1A-204ENST00000539097 ATXN8OSP0DMR3 200 aa3.08□□□□□ -1.92
HIF1A-204ENST00000539097 SLC4A1APQ9BWU0 796 aaKnown RBP3.04□□□□□ -1.92
HIF1A-204ENST00000539097 LHX8Q68G74 356 aa3.02□□□□□ -1.93
HIF1A-204ENST00000539097 RBM42Q9BTD8 480 aaKnown RBP3.02□□□□□ -1.93
HIF1A-204ENST00000539097 C19orf67A6NJJ6 358 aa2.98□□□□□ -1.93
HIF1A-204ENST00000539097 APLP2Q06481 763 aa2.97□□□□□ -1.93
HIF1A-204ENST00000539097 CHRDL2Q6WN34 429 aa2.97□□□□□ -1.93
HIF1A-204ENST00000539097 LCE2DQ5TA82 110 aaPredicted RBP2.96□□□□□ -1.94
HIF1A-204ENST00000539097 SLC4A2P04920 1241 aa2.94□□□□□ -1.94
HIF1A-204ENST00000539097 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP2.92□□□□□ -1.94
HIF1A-204ENST00000539097 HNRNPUL2Q1KMD3 747 aaKnown RBP2.92□□□□□ -1.94
HIF1A-204ENST00000539097 FOXD4L1Q9NU39 408 aa2.91□□□□□ -1.94
HIF1A-204ENST00000539097 AKT1S1Q96B36 256 aa2.88□□□□□ -1.95
HIF1A-204ENST00000539097 ATF5Q9Y2D1 282 aaPredicted RBP2.88□□□□□ -1.95
HIF1A-204ENST00000539097 POTEIP0CG38 1075 aa2.87□□□□□ -1.95
HIF1A-204ENST00000539097 MYCNP04198 464 aaPredicted RBP2.86□□□□□ -1.95
HIF1A-204ENST00000539097 RTN4Q9NQC3 1192 aaKnown RBP2.85□□□□□ -1.95
HIF1A-204ENST00000539097 U3KPZ7 1027 aaPredicted RBP2.84□□□□□ -1.95
HIF1A-204ENST00000539097 PIP4P2Q8N4L2 257 aa2.83□□□□□ -1.96
HIF1A-204ENST00000539097 SAMD1Q6SPF0 538 aaPredicted RBP2.83□□□□□ -1.96
HIF1A-204ENST00000539097 PLSCR2Q9NRY7 297 aa2.79□□□□□ -1.96
HIF1A-204ENST00000539097 AMER1Q5JTC6 1135 aaPredicted RBP2.79□□□□□ -1.96
HIF1A-204ENST00000539097 PROM2Q8N271 834 aa2.77□□□□□ -1.97
HIF1A-204ENST00000539097 ZBTB12Q9Y330 459 aaPredicted RBP2.77□□□□□ -1.97
HIF1A-204ENST00000539097 EVX2Q03828 476 aa2.76□□□□□ -1.97
HIF1A-204ENST00000539097 FKBP8Q14318 412 aa2.76□□□□□ -1.97
HIF1A-204ENST00000539097 POTEMA6NI47 508 aa2.74□□□□□ -1.97
HIF1A-204ENST00000539097 ZNF219Q9P2Y4 722 aaPredicted RBP2.74□□□□□ -1.97
HIF1A-204ENST00000539097 GABBR2O75899 941 aa2.74□□□□□ -1.97
HIF1A-204ENST00000539097 OTUD5Q96G74 571 aa2.74□□□□□ -1.97
HIF1A-204ENST00000539097 FBXO3Q9UK99 471 aa2.72□□□□□ -1.97
HIF1A-204ENST00000539097 MKRN4PQ13434 485 aaPredicted RBP2.72□□□□□ -1.97
HIF1A-204ENST00000539097 POTEGQ6S5H5 508 aa2.71□□□□□ -1.98
HIF1A-204ENST00000539097 DCAF8L1A6NGE4 600 aa2.7□□□□□ -1.98
HIF1A-204ENST00000539097 DNAJC5Q9H3Z4 198 aa2.69□□□□□ -1.98
HIF1A-204ENST00000539097 TRIM41Q8WV44 630 aa2.69□□□□□ -1.98
HIF1A-204ENST00000539097 SPINK5Q9NQ38 1064 aaPredicted RBP2.69□□□□□ -1.98
HIF1A-204ENST00000539097 MAMSTRQ6ZN01 415 aa2.68□□□□□ -1.98
HIF1A-204ENST00000539097 STAG3Q9UJ98 1225 aa2.68□□□□□ -1.98
HIF1A-204ENST00000539097 POTEJP0CG39 1038 aa2.67□□□□□ -1.98
HIF1A-204ENST00000539097 SLC24A1O60721 1099 aa2.67□□□□□ -1.98
HIF1A-204ENST00000539097 REM2Q8IYK8 340 aaPredicted RBP2.65□□□□□ -1.99
HIF1A-204ENST00000539097 GRWD1Q9BQ67 446 aaKnown RBP eCLIP2.64□□□□□ -1.991e-6■■□□□ 14.1
HIF1A-204ENST00000539097 FBLN2P98095 1184 aa2.63□□□□□ -1.99
HIF1A-204ENST00000539097 RGS20O76081 388 aa2.63□□□□□ -1.99
HIF1A-204ENST00000539097 ZNF579Q8NAF0 562 aaKnown RBP2.62□□□□□ -1.99
HIF1A-204ENST00000539097 HAX1O00165 279 aa2.62□□□□□ -1.99
HIF1A-204ENST00000539097 IFNLR1Q8IU57 520 aaPredicted RBP2.62□□□□□ -1.99
HIF1A-204ENST00000539097 SGIP1Q9BQI5 828 aa2.62□□□□□ -1.99
HIF1A-204ENST00000539097 POTEB2H3BUK9 544 aa2.61□□□□□ -1.99
HIF1A-204ENST00000539097 ILDR1Q86SU0 546 aaPredicted RBP2.61□□□□□ -1.99
HIF1A-204ENST00000539097 TAOK2Q9UL54 1235 aa2.61□□□□□ -1.99
HIF1A-204ENST00000539097 ZBTB47Q9UFB7 747 aaPredicted RBP2.6□□□□□ -1.99
HIF1A-204ENST00000539097 ASTLQ6HA08 431 aaPredicted RBP2.59□□□□□ -1.99
HIF1A-204ENST00000539097 PKD2Q13563 968 aa2.59□□□□□ -1.99
HIF1A-204ENST00000539097 POLA2Q14181 598 aa2.59□□□□□ -2
HIF1A-204ENST00000539097 ABCB7O75027 752 aa2.59□□□□□ -2
HIF1A-204ENST00000539097 CHRM1P11229 460 aaPredicted RBP2.58□□□□□ -2
HIF1A-204ENST00000539097 TRHP20396 242 aaPredicted RBP2.58□□□□□ -2
HIF1A-204ENST00000539097 SPDYE2BA6NHP3 402 aa2.58□□□□□ -2
HIF1A-204ENST00000539097 SPDYE6P0CI01 402 aa2.58□□□□□ -2
HIF1A-204ENST00000539097 SPDYE2Q495Y8 402 aa2.58□□□□□ -2
HIF1A-204ENST00000539097 ERICH6Q7L0X2 663 aa2.58□□□□□ -2
HIF1A-204ENST00000539097 SSUH2Q9Y2M2 353 aa2.58□□□□□ -2
HIF1A-204ENST00000539097 SPDYE4A6NLX3 237 aa2.58□□□□□ -2
HIF1A-204ENST00000539097 MMRN1Q13201 1228 aa2.57□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms