RNA–Protein interactions for RNA: ENST00000563498.1

NME3-204, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 2 BASIC

Gene NME3, Length 920 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-204ENST00000563498 NISCHQ9Y2I1 1504 aa47.23■■■■■ 5.15
NME3-204ENST00000563498 ABCC9O60706 1549 aa42.59■■■■■ 4.41
NME3-204ENST00000563498 CCDC180Q9P1Z9 1646 aa42.49■■■■■ 4.39
NME3-204ENST00000563498 RB1CC1Q8TDY2 1594 aa40.53■■■■■ 4.08
NME3-204ENST00000563498 NACADO15069 1562 aa40.23■■■■■ 4.03
NME3-204ENST00000563498 DNAJC5BQ9UF47 199 aa40.12■■■■■ 4.01
NME3-204ENST00000563498 DCAF8L2P0C7V8 631 aa39.82■■■■□ 3.97
NME3-204ENST00000563498 MYO15BQ96JP2 1530 aa39.66■■■■□ 3.94
NME3-204ENST00000563498 PABPN1Q86U42 306 aaKnown RBP eCLIP39.59■■■■□ 3.93
NME3-204ENST00000563498 UNC13AQ9UPW8 1703 aa39.56■■■■□ 3.92
NME3-204ENST00000563498 BICRAQ9NZM4 1560 aa39.33■■■■□ 3.89
NME3-204ENST00000563498 ZCCHC6Q5VYS8 1495 aaKnown RBP39.1■■■■□ 3.85
NME3-204ENST00000563498 DCAF1Q9Y4B6 1507 aa39.06■■■■□ 3.84
NME3-204ENST00000563498 SHROOM4Q9ULL8 1493 aa38.89■■■■□ 3.82
NME3-204ENST00000563498 SCRIBQ14160 1630 aa38.62■■■■□ 3.77
NME3-204ENST00000563498 CC2D2AQ9P2K1 1620 aa38.5■■■■□ 3.75
NME3-204ENST00000563498 CECR2Q9BXF3 1484 aa38.43■■■■□ 3.74
NME3-204ENST00000563498 EIF4G1Q04637 1599 aaKnown RBP38.39■■■■□ 3.74
NME3-204ENST00000563498 NCAPD3P42695 1498 aa37.13■■■■□ 3.54
NME3-204ENST00000563498 DNAJC5Q9H3Z4 198 aa37.04■■■■□ 3.52
NME3-204ENST00000563498 ATAD2BQ9ULI0 1458 aa36.96■■■■□ 3.51
NME3-204ENST00000563498 CUX2O14529 1486 aa36.88■■■■□ 3.49
NME3-204ENST00000563498 SMARCA2P51531 1590 aa36.87■■■■□ 3.49
NME3-204ENST00000563498 SMARCA4P51532 1647 aa36.87■■■■□ 3.49
NME3-204ENST00000563498 HMGXB3Q12766 1538 aa36.85■■■■□ 3.49
NME3-204ENST00000563498 ERCC6Q03468 1493 aa36.82■■■■□ 3.48
NME3-204ENST00000563498 BAZ1AQ9NRL2 1556 aaPredicted RBP36.69■■■■□ 3.46
NME3-204ENST00000563498 BAZ1BQ9UIG0 1483 aaKnown RBP36.59■■■■□ 3.45
NME3-204ENST00000563498 PEG3Q9GZU2 1588 aa36.57■■■■□ 3.44
NME3-204ENST00000563498 NESP48681 1621 aa36.53■■■■□ 3.44
NME3-204ENST00000563498 MROH2BQ7Z745 1585 aa36.35■■■■□ 3.41
NME3-204ENST00000563498 LAMC3Q9Y6N6 1575 aa36.32■■■■□ 3.41
NME3-204ENST00000563498 THOC2Q8NI27 1593 aaKnown RBP36.25■■■■□ 3.39
NME3-204ENST00000563498 PDS5BQ9NTI5 1447 aa36.11■■■■□ 3.37
NME3-204ENST00000563498 KIF21AQ7Z4S6 1674 aa36.07■■■■□ 3.36
NME3-204ENST00000563498 CADPSQ9ULU8 1353 aa35.98■■■■□ 3.35
NME3-204ENST00000563498 WIZO95785 1651 aa35.88■■■■□ 3.33
NME3-204ENST00000563498 MRC2Q9UBG0 1479 aa35.8■■■■□ 3.32
NME3-204ENST00000563498 WDR62O43379 1518 aa35.74■■■■□ 3.31
NME3-204ENST00000563498 CEP164Q9UPV0 1460 aa35.61■■■■□ 3.29
NME3-204ENST00000563498 FANCD2Q9BXW9 1451 aa35.54■■■■□ 3.28
NME3-204ENST00000563498 RSF1Q96T23 1441 aaPredicted RBP35.54■■■■□ 3.28
NME3-204ENST00000563498 CFTRP13569 1480 aa35.54■■■■□ 3.28
NME3-204ENST00000563498 TOP2AP11388 1531 aaKnown RBP35.47■■■■□ 3.27
NME3-204ENST00000563498 URB2Q14146 1524 aaKnown RBP35.26■■■■□ 3.23
NME3-204ENST00000563498 TRIM41Q8WV44 630 aa35.24■■■■□ 3.23
NME3-204ENST00000563498 PRDM2Q13029 1718 aa35.15■■■■□ 3.22
NME3-204ENST00000563498 OSCARQ8IYS5 282 aa35.12■■■■□ 3.21
NME3-204ENST00000563498 CCDC88BA6NC98 1476 aa35.04■■■■□ 3.2
NME3-204ENST00000563498 IFT140Q96RY7 1462 aa34.93■■■■□ 3.18
NME3-204ENST00000563498 TOPBP1Q92547 1522 aa34.86■■■■□ 3.17
NME3-204ENST00000563498 ZNF608Q9ULD9 1512 aaPredicted RBP34.84■■■■□ 3.17
NME3-204ENST00000563498 ABCC8Q09428 1581 aa34.83■■■■□ 3.17
NME3-204ENST00000563498 DNMBPQ6XZF7 1577 aa34.73■■■■□ 3.15
NME3-204ENST00000563498 RIMBP3CA6NJZ7 1639 aa34.66■■■■□ 3.14
NME3-204ENST00000563498 RIMBP3BA6NNM3 1639 aa34.66■■■■□ 3.14
NME3-204ENST00000563498 RIMBP3Q9UFD9 1639 aa34.66■■■■□ 3.14
NME3-204ENST00000563498 EIF4G3O43432 1585 aaKnown RBP34.66■■■■□ 3.14
NME3-204ENST00000563498 TARBP1Q13395 1621 aaKnown RBP34.58■■■■□ 3.13
NME3-204ENST00000563498 ARHGEF11O15085 1522 aa34.55■■■■□ 3.12
NME3-204ENST00000563498 AQRO60306 1485 aaKnown RBP eCLIP34.5■■■■□ 3.113e-11■■■□□ 16.1
NME3-204ENST00000563498 POLA1P09884 1462 aaPredicted RBP34.49■■■■□ 3.11
NME3-204ENST00000563498 CHD1O14646 1710 aa34.41■■■■□ 3.1
NME3-204ENST00000563498 RAD54L2Q9Y4B4 1467 aa34.33■■■■□ 3.09
NME3-204ENST00000563498 SOGA1O94964 1423 aa34.31■■■■□ 3.08
NME3-204ENST00000563498 WDR97A6NE52 1622 aa34.27■■■■□ 3.08
NME3-204ENST00000563498 FBLN2P98095 1184 aa34.27■■■■□ 3.08
NME3-204ENST00000563498 CYB5RLQ6IPT4 315 aa34.27■■■■□ 3.08
NME3-204ENST00000563498 TDRD9Q8NDG6 1382 aaKnown RBP34.24■■■■□ 3.07
NME3-204ENST00000563498 FGD5Q6ZNL6 1462 aa34.23■■■■□ 3.07
NME3-204ENST00000563498 ARAP1Q96P48 1450 aa34.19■■■■□ 3.06
NME3-204ENST00000563498 CUX1P39880 1505 aa34.17■■■■□ 3.06
NME3-204ENST00000563498 SNAPC4Q5SXM2 1469 aa34.15■■■■□ 3.06
NME3-204ENST00000563498 MAGI1Q96QZ7 1491 aaPredicted RBP34.11■■■■□ 3.05
NME3-204ENST00000563498 GRIN2BQ13224 1484 aa34.07■■■■□ 3.04
NME3-204ENST00000563498 CLASP1Q7Z460 1538 aa34.06■■■■□ 3.04
NME3-204ENST00000563498 CHMP7Q8WUX9 453 aaPredicted RBP34.03■■■■□ 3.04
NME3-204ENST00000563498 SYNJ1O43426 1573 aa34.02■■■■□ 3.04
NME3-204ENST00000563498 SYNJ2O15056 1496 aa33.98■■■■□ 3.03
NME3-204ENST00000563498 TRHP20396 242 aaPredicted RBP33.93■■■■□ 3.02
NME3-204ENST00000563498 GAPVD1Q14C86 1478 aa33.91■■■■□ 3.02
NME3-204ENST00000563498 PBRM1Q86U86 1689 aa33.89■■■■□ 3.02
NME3-204ENST00000563498 ABCA10Q8WWZ4 1543 aa33.87■■■■□ 3.01
NME3-204ENST00000563498 ABCA5Q8WWZ7 1642 aa33.82■■■■□ 3.01
NME3-204ENST00000563498 SUPT5HO00267 1087 aaKnown RBP33.72■■■□□ 2.99
NME3-204ENST00000563498 WRNQ14191 1432 aaPredicted RBP eCLIP33.69■■■□□ 2.98
NME3-204ENST00000563498 GRIN2AQ12879 1464 aa33.63■■■□□ 2.97
NME3-204ENST00000563498 TOP2BQ02880 1626 aa33.6■■■□□ 2.97
NME3-204ENST00000563498 BIVM-ERCC5R4GMW8 1640 aa33.6■■■□□ 2.97
NME3-204ENST00000563498 ADAMTS12P58397 1594 aa33.58■■■□□ 2.97
NME3-204ENST00000563498 NUP160Q12769 1436 aa33.53■■■□□ 2.96
NME3-204ENST00000563498 FHAD1B1AJZ9 1412 aa33.49■■■□□ 2.95
NME3-204ENST00000563498 CEP170Q5SW79 1584 aa33.49■■■□□ 2.95
NME3-204ENST00000563498 ERCC6L2Q5T890 1561 aa33.46■■■□□ 2.95
NME3-204ENST00000563498 ERICH3Q5RHP9 1530 aa33.44■■■□□ 2.94
NME3-204ENST00000563498 SHROOM2Q13796 1616 aa33.41■■■□□ 2.94
NME3-204ENST00000563498 PRG4Q92954 1404 aaPredicted RBP33.19■■■□□ 2.9
NME3-204ENST00000563498 JPH4Q96JJ6 628 aa33.15■■■□□ 2.9
NME3-204ENST00000563498 RUSC2Q8N2Y8 1516 aa33.12■■■□□ 2.89
NME3-204ENST00000563498 AEBP2Q6ZN18 517 aaPredicted RBP33.1■■■□□ 2.89
Retrieved 100 of 20,778 RNA–protein pairs in 998.6 ms