RNA–Protein interactions for RNA: ENST00000564252.1

NME3-206, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 2

Gene NME3, Length 599 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-206ENST00000564252 NISCHQ9Y2I1 1504 aa59.81■■■■■ 7.17
NME3-206ENST00000564252 CCDC180Q9P1Z9 1646 aa53.62■■■■■ 6.17
NME3-206ENST00000564252 ABCC9O60706 1549 aa53.42■■■■■ 6.14
NME3-206ENST00000564252 RB1CC1Q8TDY2 1594 aa50.94■■■■■ 5.75
NME3-206ENST00000564252 NACADO15069 1562 aa50.64■■■■■ 5.7
NME3-206ENST00000564252 DCAF8L2P0C7V8 631 aa50.31■■■■■ 5.64
NME3-206ENST00000564252 MYO15BQ96JP2 1530 aa50.02■■■■■ 5.6
NME3-206ENST00000564252 DNAJC5BQ9UF47 199 aa49.99■■■■■ 5.59
NME3-206ENST00000564252 UNC13AQ9UPW8 1703 aa49.82■■■■■ 5.57
NME3-206ENST00000564252 PABPN1Q86U42 306 aaKnown RBP eCLIP49.75■■■■■ 5.55
NME3-206ENST00000564252 ZCCHC6Q5VYS8 1495 aaKnown RBP49.63■■■■■ 5.53
NME3-206ENST00000564252 BICRAQ9NZM4 1560 aa49.49■■■■■ 5.51
NME3-206ENST00000564252 DCAF1Q9Y4B6 1507 aa49.44■■■■■ 5.5
NME3-206ENST00000564252 SCRIBQ14160 1630 aa48.84■■■■■ 5.41
NME3-206ENST00000564252 SHROOM4Q9ULL8 1493 aa48.83■■■■■ 5.41
NME3-206ENST00000564252 CC2D2AQ9P2K1 1620 aa48.29■■■■■ 5.32
NME3-206ENST00000564252 EIF4G1Q04637 1599 aaKnown RBP48.24■■■■■ 5.31
NME3-206ENST00000564252 CECR2Q9BXF3 1484 aa48.12■■■■■ 5.29
NME3-206ENST00000564252 NCAPD3P42695 1498 aa46.76■■■■■ 5.08
NME3-206ENST00000564252 SMARCA4P51532 1647 aa46.64■■■■■ 5.06
NME3-206ENST00000564252 ATAD2BQ9ULI0 1458 aa46.63■■■■■ 5.05
NME3-206ENST00000564252 SMARCA2P51531 1590 aa46.51■■■■■ 5.04
NME3-206ENST00000564252 HMGXB3Q12766 1538 aa46.44■■■■■ 5.02
NME3-206ENST00000564252 BAZ1AQ9NRL2 1556 aaPredicted RBP46.41■■■■■ 5.02
NME3-206ENST00000564252 PEG3Q9GZU2 1588 aa46.2■■■■■ 4.99
NME3-206ENST00000564252 BAZ1BQ9UIG0 1483 aaKnown RBP46.17■■■■■ 4.98
NME3-206ENST00000564252 ERCC6Q03468 1493 aa46.1■■■■■ 4.97
NME3-206ENST00000564252 MROH2BQ7Z745 1585 aa46.09■■■■■ 4.97
NME3-206ENST00000564252 CUX2O14529 1486 aa46■■■■■ 4.95
NME3-206ENST00000564252 NESP48681 1621 aa45.96■■■■■ 4.95
NME3-206ENST00000564252 DNAJC5Q9H3Z4 198 aa45.77■■■■■ 4.92
NME3-206ENST00000564252 LAMC3Q9Y6N6 1575 aa45.67■■■■■ 4.9
NME3-206ENST00000564252 WIZO95785 1651 aa45.55■■■■■ 4.88
NME3-206ENST00000564252 THOC2Q8NI27 1593 aaKnown RBP45.5■■■■■ 4.87
NME3-206ENST00000564252 KIF21AQ7Z4S6 1674 aa45.39■■■■■ 4.86
NME3-206ENST00000564252 PDS5BQ9NTI5 1447 aa45.38■■■■■ 4.86
NME3-206ENST00000564252 CADPSQ9ULU8 1353 aa45.32■■■■■ 4.84
NME3-206ENST00000564252 RSF1Q96T23 1441 aaPredicted RBP45.18■■■■■ 4.82
NME3-206ENST00000564252 MRC2Q9UBG0 1479 aa44.99■■■■■ 4.79
NME3-206ENST00000564252 TOP2AP11388 1531 aaKnown RBP44.99■■■■■ 4.79
NME3-206ENST00000564252 WDR62O43379 1518 aa44.91■■■■■ 4.78
NME3-206ENST00000564252 CFTRP13569 1480 aa44.86■■■■■ 4.77
NME3-206ENST00000564252 CEP164Q9UPV0 1460 aa44.84■■■■■ 4.77
NME3-206ENST00000564252 FANCD2Q9BXW9 1451 aa44.81■■■■■ 4.76
NME3-206ENST00000564252 CCDC88BA6NC98 1476 aa44.47■■■■■ 4.71
NME3-206ENST00000564252 URB2Q14146 1524 aaKnown RBP44.45■■■■■ 4.71
NME3-206ENST00000564252 PRDM2Q13029 1718 aa44.44■■■■■ 4.7
NME3-206ENST00000564252 TOPBP1Q92547 1522 aa43.99■■■■■ 4.63
NME3-206ENST00000564252 IFT140Q96RY7 1462 aa43.94■■■■■ 4.62
NME3-206ENST00000564252 ABCC8Q09428 1581 aa43.88■■■■■ 4.62
NME3-206ENST00000564252 OSCARQ8IYS5 282 aa43.88■■■■■ 4.62
NME3-206ENST00000564252 ZNF608Q9ULD9 1512 aaPredicted RBP43.87■■■■■ 4.61
NME3-206ENST00000564252 DNMBPQ6XZF7 1577 aa43.84■■■■■ 4.61
NME3-206ENST00000564252 TRIM41Q8WV44 630 aa43.79■■■■■ 4.6
NME3-206ENST00000564252 EIF4G3O43432 1585 aaKnown RBP43.64■■■■■ 4.58
NME3-206ENST00000564252 TARBP1Q13395 1621 aaKnown RBP43.61■■■■■ 4.57
NME3-206ENST00000564252 POLA1P09884 1462 aaPredicted RBP43.56■■■■■ 4.56
NME3-206ENST00000564252 AQRO60306 1485 aaKnown RBP eCLIP43.48■■■■■ 4.553e-11■■■□□ 16.1
NME3-206ENST00000564252 RAD54L2Q9Y4B4 1467 aa43.38■■■■■ 4.54
NME3-206ENST00000564252 RIMBP3CA6NJZ7 1639 aa43.35■■■■■ 4.53
NME3-206ENST00000564252 RIMBP3BA6NNM3 1639 aa43.35■■■■■ 4.53
NME3-206ENST00000564252 RIMBP3Q9UFD9 1639 aa43.35■■■■■ 4.53
NME3-206ENST00000564252 SOGA1O94964 1423 aa43.33■■■■■ 4.53
NME3-206ENST00000564252 CUX1P39880 1505 aa43.3■■■■■ 4.52
NME3-206ENST00000564252 FGD5Q6ZNL6 1462 aa43.3■■■■■ 4.52
NME3-206ENST00000564252 CHD1O14646 1710 aa43.28■■■■■ 4.52
NME3-206ENST00000564252 SUPT5HO00267 1087 aaKnown RBP43.23■■■■■ 4.51
NME3-206ENST00000564252 ARHGEF11O15085 1522 aa43.22■■■■■ 4.51
NME3-206ENST00000564252 TDRD9Q8NDG6 1382 aaKnown RBP43.22■■■■■ 4.51
NME3-206ENST00000564252 WDR97A6NE52 1622 aa43.17■■■■■ 4.5
NME3-206ENST00000564252 FBLN2P98095 1184 aa43.1■■■■■ 4.49
NME3-206ENST00000564252 SNAPC4Q5SXM2 1469 aa43.05■■■■■ 4.48
NME3-206ENST00000564252 GRIN2BQ13224 1484 aa42.95■■■■■ 4.47
NME3-206ENST00000564252 MAGI1Q96QZ7 1491 aaPredicted RBP42.94■■■■■ 4.47
NME3-206ENST00000564252 CYB5RLQ6IPT4 315 aa42.84■■■■■ 4.45
NME3-206ENST00000564252 CHMP7Q8WUX9 453 aaPredicted RBP42.83■■■■■ 4.45
NME3-206ENST00000564252 ABCA10Q8WWZ4 1543 aa42.82■■■■■ 4.45
NME3-206ENST00000564252 GAPVD1Q14C86 1478 aa42.82■■■■■ 4.45
NME3-206ENST00000564252 ARAP1Q96P48 1450 aa42.82■■■■■ 4.45
NME3-206ENST00000564252 PBRM1Q86U86 1689 aa42.82■■■■■ 4.44
NME3-206ENST00000564252 CLASP1Q7Z460 1538 aa42.81■■■■■ 4.44
NME3-206ENST00000564252 SYNJ2O15056 1496 aa42.8■■■■■ 4.44
NME3-206ENST00000564252 SYNJ1O43426 1573 aa42.77■■■■■ 4.44
NME3-206ENST00000564252 ABCA5Q8WWZ7 1642 aa42.76■■■■■ 4.44
NME3-206ENST00000564252 BIVM-ERCC5R4GMW8 1640 aa42.66■■■■■ 4.42
NME3-206ENST00000564252 WRNQ14191 1432 aaPredicted RBP eCLIP42.65■■■■■ 4.42
NME3-206ENST00000564252 TOP2BQ02880 1626 aa42.65■■■■■ 4.42
NME3-206ENST00000564252 ADAMTS12P58397 1594 aa42.43■■■■■ 4.38
NME3-206ENST00000564252 GRIN2AQ12879 1464 aa42.41■■■■■ 4.38
NME3-206ENST00000564252 TRHP20396 242 aaPredicted RBP42.29■■■■■ 4.36
NME3-206ENST00000564252 ERICH3Q5RHP9 1530 aa42.29■■■■■ 4.36
NME3-206ENST00000564252 FHAD1B1AJZ9 1412 aa42.28■■■■■ 4.36
NME3-206ENST00000564252 NUP160Q12769 1436 aa42.27■■■■■ 4.36
NME3-206ENST00000564252 CEP170Q5SW79 1584 aa42.27■■■■■ 4.36
NME3-206ENST00000564252 ERCC6L2Q5T890 1561 aa42.15■■■■■ 4.34
NME3-206ENST00000564252 SHROOM2Q13796 1616 aa42.09■■■■■ 4.33
NME3-206ENST00000564252 RUSC2Q8N2Y8 1516 aa41.83■■■■■ 4.29
NME3-206ENST00000564252 PRG4Q92954 1404 aaPredicted RBP41.82■■■■■ 4.29
NME3-206ENST00000564252 JPH4Q96JJ6 628 aa41.79■■■■■ 4.28
NME3-206ENST00000564252 KIF27Q86VH2 1401 aa41.78■■■■■ 4.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms