RNA–Protein interactions for RNA: ENST00000611405.4

SRRT-213, Transcript of serrate, RNA effector molecule, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SRRT, Length 2,905 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRRT-213ENST00000611405 NISCHQ9Y2I1 1504 aa25.65■■□□□ 1.7
SRRT-213ENST00000611405 CCDC180Q9P1Z9 1646 aa22.06■■□□□ 1.12
SRRT-213ENST00000611405 ZCCHC6Q5VYS8 1495 aaKnown RBP21.65■■□□□ 1.06
SRRT-213ENST00000611405 SHROOM4Q9ULL8 1493 aa21.37■■□□□ 1.01
SRRT-213ENST00000611405 DCAF1Q9Y4B6 1507 aa21.19■□□□□ 0.98
SRRT-213ENST00000611405 DCAF8L2P0C7V8 631 aa21.11■□□□□ 0.97
SRRT-213ENST00000611405 SUPT5HO00267 1087 aaKnown RBP20.84■□□□□ 0.93
SRRT-213ENST00000611405 MYO15BQ96JP2 1530 aa20.73■□□□□ 0.91
SRRT-213ENST00000611405 ABCC9O60706 1549 aa20.48■□□□□ 0.87
SRRT-213ENST00000611405 NACADO15069 1562 aa20.46■□□□□ 0.87
SRRT-213ENST00000611405 SCRIBQ14160 1630 aa20.42■□□□□ 0.86
SRRT-213ENST00000611405 CHIC1Q5VXU3 224 aa20.21■□□□□ 0.83
SRRT-213ENST00000611405 RB1CC1Q8TDY2 1594 aa20.16■□□□□ 0.82
SRRT-213ENST00000611405 RSF1Q96T23 1441 aaPredicted RBP20.13■□□□□ 0.81
SRRT-213ENST00000611405 CECR2Q9BXF3 1484 aa19.91■□□□□ 0.78
SRRT-213ENST00000611405 MROH2BQ7Z745 1585 aa19.85■□□□□ 0.77
SRRT-213ENST00000611405 BAZ1AQ9NRL2 1556 aaPredicted RBP19.75■□□□□ 0.75
SRRT-213ENST00000611405 UNC13AQ9UPW8 1703 aa19.73■□□□□ 0.75
SRRT-213ENST00000611405 WIZO95785 1651 aa19.7■□□□□ 0.74
SRRT-213ENST00000611405 SMARCA4P51532 1647 aa19.59■□□□□ 0.73
SRRT-213ENST00000611405 BICRAQ9NZM4 1560 aa19.55■□□□□ 0.72
SRRT-213ENST00000611405 TRIM41Q8WV44 630 aa19.54■□□□□ 0.72
SRRT-213ENST00000611405 TOP2AP11388 1531 aaKnown RBP19.51■□□□□ 0.71
SRRT-213ENST00000611405 LOC105371045A0A1W2PR82 267 aa19.48■□□□□ 0.71
SRRT-213ENST00000611405 PABPN1Q86U42 306 aaKnown RBP eCLIP19.46■□□□□ 0.711e-6■■■■□ 20.3
SRRT-213ENST00000611405 EIF4G1Q04637 1599 aaKnown RBP19.38■□□□□ 0.69
SRRT-213ENST00000611405 CCDC88BA6NC98 1476 aa19.35■□□□□ 0.69
SRRT-213ENST00000611405 SMARCA2P51531 1590 aa19.34■□□□□ 0.69
SRRT-213ENST00000611405 PEG3Q9GZU2 1588 aa19.32■□□□□ 0.68
SRRT-213ENST00000611405 FAM9AQ8IZU1 332 aaPredicted RBP19.22■□□□□ 0.67
SRRT-213ENST00000611405 ATAD2BQ9ULI0 1458 aa19.16■□□□□ 0.66
SRRT-213ENST00000611405 PCGF6Q9BYE7 350 aa19.15■□□□□ 0.66
SRRT-213ENST00000611405 ABCC8Q09428 1581 aa19.1■□□□□ 0.65
SRRT-213ENST00000611405 BAZ1BQ9UIG0 1483 aaKnown RBP19.08■□□□□ 0.65
SRRT-213ENST00000611405 HRCP23327 699 aa19.03■□□□□ 0.64
SRRT-213ENST00000611405 TRIM26Q12899 539 aaPredicted RBP19.01■□□□□ 0.63
SRRT-213ENST00000611405 EHMT2Q96KQ7 1210 aa18.94■□□□□ 0.62
SRRT-213ENST00000611405 EEA1Q15075 1411 aa18.94■□□□□ 0.62
SRRT-213ENST00000611405 WRNQ14191 1432 aaPredicted RBP eCLIP18.93■□□□□ 0.626e-7■■■■■ 33.4
SRRT-213ENST00000611405 NCAPD3P42695 1498 aa18.91■□□□□ 0.62
SRRT-213ENST00000611405 HMGXB3Q12766 1538 aa18.89■□□□□ 0.61
SRRT-213ENST00000611405 SOGA1O94964 1423 aa18.88■□□□□ 0.61
SRRT-213ENST00000611405 CSRNP3Q8WYN3 585 aa18.82■□□□□ 0.6
SRRT-213ENST00000611405 SYNJ1O43426 1573 aa18.8■□□□□ 0.6
SRRT-213ENST00000611405 RUSC2Q8N2Y8 1516 aa18.77■□□□□ 0.6
SRRT-213ENST00000611405 TNIKQ9UKE5 1360 aa18.76■□□□□ 0.59
SRRT-213ENST00000611405 GOLGA3Q08378 1498 aa18.7■□□□□ 0.58
SRRT-213ENST00000611405 CEP162Q5TB80 1403 aa18.69■□□□□ 0.58
SRRT-213ENST00000611405 TOP2BQ02880 1626 aa18.68■□□□□ 0.58
SRRT-213ENST00000611405 CEP164Q9UPV0 1460 aa18.64■□□□□ 0.58
SRRT-213ENST00000611405 UBTFP17480 764 aaKnown RBP18.64■□□□□ 0.57
SRRT-213ENST00000611405 KIF21BO75037 1637 aa18.63■□□□□ 0.57
SRRT-213ENST00000611405 BIVM-ERCC5R4GMW8 1640 aa18.63■□□□□ 0.57
SRRT-213ENST00000611405 CFTRP13569 1480 aa18.63■□□□□ 0.57
SRRT-213ENST00000611405 ZEB1P37275 1124 aaPredicted RBP18.54■□□□□ 0.56
SRRT-213ENST00000611405 PPARGC1BQ86YN6 1023 aaKnown RBP18.53■□□□□ 0.56
SRRT-213ENST00000611405 CUX1P39880 1505 aa18.52■□□□□ 0.56
SRRT-213ENST00000611405 CC2D2AQ9P2K1 1620 aa18.51■□□□□ 0.55
SRRT-213ENST00000611405 PRDM2Q13029 1718 aa18.49■□□□□ 0.55
SRRT-213ENST00000611405 CADPSQ9ULU8 1353 aa18.48■□□□□ 0.55
SRRT-213ENST00000611405 RAPGEF2Q9Y4G8 1499 aa18.46■□□□□ 0.55
SRRT-213ENST00000611405 CLIP1P30622 1438 aa18.43■□□□□ 0.54
SRRT-213ENST00000611405 ERICH3Q5RHP9 1530 aa18.42■□□□□ 0.54
SRRT-213ENST00000611405 KIF27Q86VH2 1401 aa18.41■□□□□ 0.54
SRRT-213ENST00000611405 PRXQ9BXM0 1461 aa18.41■□□□□ 0.54
SRRT-213ENST00000611405 VPS8Q8N3P4 1428 aa18.34■□□□□ 0.53
SRRT-213ENST00000611405 TTBK1Q5TCY1 1321 aaPredicted RBP18.27■□□□□ 0.52
SRRT-213ENST00000611405 FANCD2Q9BXW9 1451 aa18.27■□□□□ 0.51
SRRT-213ENST00000611405 CUX2O14529 1486 aa18.24■□□□□ 0.51
SRRT-213ENST00000611405 FGD5Q6ZNL6 1462 aa18.24■□□□□ 0.51
SRRT-213ENST00000611405 APLP2Q06481 763 aa18.22■□□□□ 0.51
SRRT-213ENST00000611405 IGF1RP08069 1367 aa18.21■□□□□ 0.5
SRRT-213ENST00000611405 RANGAP1P46060 587 aaPredicted RBP18.19■□□□□ 0.5
SRRT-213ENST00000611405 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.18■□□□□ 0.5
SRRT-213ENST00000611405 CCER1Q8TC90 406 aaPredicted RBP18.18■□□□□ 0.5
SRRT-213ENST00000611405 DNMBPQ6XZF7 1577 aa18.18■□□□□ 0.5
SRRT-213ENST00000611405 ARAP1Q96P48 1450 aa18.17■□□□□ 0.5
SRRT-213ENST00000611405 LAMC3Q9Y6N6 1575 aa18.15■□□□□ 0.5
SRRT-213ENST00000611405 NESP48681 1621 aa18.14■□□□□ 0.49
SRRT-213ENST00000611405 CARMIL1Q5VZK9 1371 aa18.12■□□□□ 0.49
SRRT-213ENST00000611405 TOPBP1Q92547 1522 aa18.12■□□□□ 0.49
SRRT-213ENST00000611405 ABCA10Q8WWZ4 1543 aa18.09■□□□□ 0.49
SRRT-213ENST00000611405 POLA1P09884 1462 aaPredicted RBP18.07■□□□□ 0.48
SRRT-213ENST00000611405 ARHGAP35Q9NRY4 1499 aa18.07■□□□□ 0.48
SRRT-213ENST00000611405 RAD54L2Q9Y4B4 1467 aa18.04■□□□□ 0.48
SRRT-213ENST00000611405 PDS5BQ9NTI5 1447 aa18.03■□□□□ 0.48
SRRT-213ENST00000611405 URB2Q14146 1524 aaKnown RBP18■□□□□ 0.47
SRRT-213ENST00000611405 HNRNPUL2Q1KMD3 747 aaKnown RBP17.97■□□□□ 0.47
SRRT-213ENST00000611405 CUL7Q14999 1698 aa17.96■□□□□ 0.47
SRRT-213ENST00000611405 KANK4Q5T7N3 995 aaPredicted RBP17.94■□□□□ 0.46
SRRT-213ENST00000611405 DNAJC5BQ9UF47 199 aa17.94■□□□□ 0.46
SRRT-213ENST00000611405 WDR97A6NE52 1622 aa17.93■□□□□ 0.46
SRRT-213ENST00000611405 MAP3K1Q13233 1512 aa17.91■□□□□ 0.46
SRRT-213ENST00000611405 RRBP1Q9P2E9 1410 aaKnown RBP17.88■□□□□ 0.45
SRRT-213ENST00000611405 FHAD1B1AJZ9 1412 aa17.87■□□□□ 0.45
SRRT-213ENST00000611405 KIF21AQ7Z4S6 1674 aa17.87■□□□□ 0.45
SRRT-213ENST00000611405 ABCA5Q8WWZ7 1642 aa17.87■□□□□ 0.45
SRRT-213ENST00000611405 EFCAB5A4FU69 1503 aa17.85■□□□□ 0.45
SRRT-213ENST00000611405 GAPVD1Q14C86 1478 aa17.84■□□□□ 0.45
SRRT-213ENST00000611405 TIAM1Q13009 1591 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms