RNA–Protein interactions for RNA: ENST00000563854.1

NME3-205, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 5

Gene NME3, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-205ENST00000563854 NISCHQ9Y2I1 1504 aa43.72■■■■■ 4.59
NME3-205ENST00000563854 CCDC180Q9P1Z9 1646 aa39.1■■■■□ 3.85
NME3-205ENST00000563854 ABCC9O60706 1549 aa38.86■■■■□ 3.81
NME3-205ENST00000563854 RB1CC1Q8TDY2 1594 aa37.08■■■■□ 3.53
NME3-205ENST00000563854 DCAF8L2P0C7V8 631 aa36.89■■■■□ 3.5
NME3-205ENST00000563854 NACADO15069 1562 aa36.87■■■■□ 3.49
NME3-205ENST00000563854 MYO15BQ96JP2 1530 aa36.39■■■■□ 3.42
NME3-205ENST00000563854 ZCCHC6Q5VYS8 1495 aaKnown RBP36.31■■■■□ 3.4
NME3-205ENST00000563854 UNC13AQ9UPW8 1703 aa36.25■■■■□ 3.39
NME3-205ENST00000563854 PABPN1Q86U42 306 aaKnown RBP eCLIP36.23■■■■□ 3.39
NME3-205ENST00000563854 DNAJC5BQ9UF47 199 aa36.11■■■■□ 3.37
NME3-205ENST00000563854 DCAF1Q9Y4B6 1507 aa36.07■■■■□ 3.36
NME3-205ENST00000563854 BICRAQ9NZM4 1560 aa35.96■■■■□ 3.35
NME3-205ENST00000563854 SCRIBQ14160 1630 aa35.75■■■■□ 3.31
NME3-205ENST00000563854 SHROOM4Q9ULL8 1493 aa35.47■■■■□ 3.27
NME3-205ENST00000563854 CC2D2AQ9P2K1 1620 aa35.08■■■■□ 3.21
NME3-205ENST00000563854 EIF4G1Q04637 1599 aaKnown RBP35.08■■■■□ 3.21
NME3-205ENST00000563854 CECR2Q9BXF3 1484 aa34.94■■■■□ 3.18
NME3-205ENST00000563854 SMARCA4P51532 1647 aa34.07■■■■□ 3.04
NME3-205ENST00000563854 NCAPD3P42695 1498 aa34■■■■□ 3.03
NME3-205ENST00000563854 ATAD2BQ9ULI0 1458 aa33.99■■■■□ 3.03
NME3-205ENST00000563854 BAZ1AQ9NRL2 1556 aaPredicted RBP33.94■■■■□ 3.02
NME3-205ENST00000563854 SMARCA2P51531 1590 aa33.93■■■■□ 3.02
NME3-205ENST00000563854 HMGXB3Q12766 1538 aa33.82■■■■□ 3
NME3-205ENST00000563854 BAZ1BQ9UIG0 1483 aaKnown RBP33.73■■■□□ 2.99
NME3-205ENST00000563854 MROH2BQ7Z745 1585 aa33.72■■■□□ 2.99
NME3-205ENST00000563854 PEG3Q9GZU2 1588 aa33.66■■■□□ 2.98
NME3-205ENST00000563854 ERCC6Q03468 1493 aa33.56■■■□□ 2.96
NME3-205ENST00000563854 NESP48681 1621 aa33.46■■■□□ 2.95
NME3-205ENST00000563854 WIZO95785 1651 aa33.36■■■□□ 2.93
NME3-205ENST00000563854 CUX2O14529 1486 aa33.29■■■□□ 2.92
NME3-205ENST00000563854 LAMC3Q9Y6N6 1575 aa33.24■■■□□ 2.91
NME3-205ENST00000563854 DNAJC5Q9H3Z4 198 aa33.17■■■□□ 2.9
NME3-205ENST00000563854 RSF1Q96T23 1441 aaPredicted RBP33.11■■■□□ 2.89
NME3-205ENST00000563854 KIF21AQ7Z4S6 1674 aa33.05■■■□□ 2.88
NME3-205ENST00000563854 THOC2Q8NI27 1593 aaKnown RBP33.04■■■□□ 2.88
NME3-205ENST00000563854 PDS5BQ9NTI5 1447 aa33.03■■■□□ 2.88
NME3-205ENST00000563854 CADPSQ9ULU8 1353 aa33.01■■■□□ 2.88
NME3-205ENST00000563854 TOP2AP11388 1531 aaKnown RBP32.94■■■□□ 2.86
NME3-205ENST00000563854 MRC2Q9UBG0 1479 aa32.75■■■□□ 2.83
NME3-205ENST00000563854 CEP164Q9UPV0 1460 aa32.71■■■□□ 2.83
NME3-205ENST00000563854 CFTRP13569 1480 aa32.7■■■□□ 2.83
NME3-205ENST00000563854 FANCD2Q9BXW9 1451 aa32.69■■■□□ 2.82
NME3-205ENST00000563854 WDR62O43379 1518 aa32.64■■■□□ 2.82
NME3-205ENST00000563854 CCDC88BA6NC98 1476 aa32.55■■■□□ 2.8
NME3-205ENST00000563854 PRDM2Q13029 1718 aa32.45■■■□□ 2.78
NME3-205ENST00000563854 URB2Q14146 1524 aaKnown RBP32.39■■■□□ 2.78
NME3-205ENST00000563854 TOPBP1Q92547 1522 aa32.1■■■□□ 2.73
NME3-205ENST00000563854 DNMBPQ6XZF7 1577 aa32.02■■■□□ 2.72
NME3-205ENST00000563854 SUPT5HO00267 1087 aaKnown RBP32.01■■■□□ 2.71
NME3-205ENST00000563854 IFT140Q96RY7 1462 aa32.01■■■□□ 2.71
NME3-205ENST00000563854 ABCC8Q09428 1581 aa32.01■■■□□ 2.71
NME3-205ENST00000563854 ZNF608Q9ULD9 1512 aaPredicted RBP31.95■■■□□ 2.71
NME3-205ENST00000563854 OSCARQ8IYS5 282 aa31.82■■■□□ 2.68
NME3-205ENST00000563854 EIF4G3O43432 1585 aaKnown RBP31.81■■■□□ 2.68
NME3-205ENST00000563854 POLA1P09884 1462 aaPredicted RBP31.79■■■□□ 2.68
NME3-205ENST00000563854 TARBP1Q13395 1621 aaKnown RBP31.77■■■□□ 2.68
NME3-205ENST00000563854 TRIM41Q8WV44 630 aa31.71■■■□□ 2.67
NME3-205ENST00000563854 AQRO60306 1485 aaKnown RBP eCLIP31.7■■■□□ 2.663e-11■■■□□ 16.1
NME3-205ENST00000563854 RAD54L2Q9Y4B4 1467 aa31.69■■■□□ 2.66
NME3-205ENST00000563854 CUX1P39880 1505 aa31.67■■■□□ 2.66
NME3-205ENST00000563854 FGD5Q6ZNL6 1462 aa31.66■■■□□ 2.66
NME3-205ENST00000563854 SOGA1O94964 1423 aa31.66■■■□□ 2.66
NME3-205ENST00000563854 TDRD9Q8NDG6 1382 aaKnown RBP31.56■■■□□ 2.64
NME3-205ENST00000563854 CHD1O14646 1710 aa31.52■■■□□ 2.64
NME3-205ENST00000563854 FBLN2P98095 1184 aa31.5■■■□□ 2.63
NME3-205ENST00000563854 WDR97A6NE52 1622 aa31.44■■■□□ 2.62
NME3-205ENST00000563854 RIMBP3CA6NJZ7 1639 aa31.42■■■□□ 2.62
NME3-205ENST00000563854 RIMBP3BA6NNM3 1639 aa31.42■■■□□ 2.62
NME3-205ENST00000563854 RIMBP3Q9UFD9 1639 aa31.42■■■□□ 2.62
NME3-205ENST00000563854 SNAPC4Q5SXM2 1469 aa31.42■■■□□ 2.62
NME3-205ENST00000563854 ARHGEF11O15085 1522 aa31.34■■■□□ 2.61
NME3-205ENST00000563854 GRIN2BQ13224 1484 aa31.33■■■□□ 2.61
NME3-205ENST00000563854 MAGI1Q96QZ7 1491 aaPredicted RBP31.3■■■□□ 2.6
NME3-205ENST00000563854 PBRM1Q86U86 1689 aa31.29■■■□□ 2.6
NME3-205ENST00000563854 GAPVD1Q14C86 1478 aa31.28■■■□□ 2.6
NME3-205ENST00000563854 ABCA10Q8WWZ4 1543 aa31.28■■■□□ 2.6
NME3-205ENST00000563854 WRNQ14191 1432 aaPredicted RBP eCLIP31.27■■■□□ 2.6
NME3-205ENST00000563854 CHMP7Q8WUX9 453 aaPredicted RBP31.26■■■□□ 2.59
NME3-205ENST00000563854 SYNJ1O43426 1573 aa31.25■■■□□ 2.59
NME3-205ENST00000563854 BIVM-ERCC5R4GMW8 1640 aa31.24■■■□□ 2.59
NME3-205ENST00000563854 TOP2BQ02880 1626 aa31.24■■■□□ 2.59
NME3-205ENST00000563854 ABCA5Q8WWZ7 1642 aa31.23■■■□□ 2.59
NME3-205ENST00000563854 SYNJ2O15056 1496 aa31.2■■■□□ 2.58
NME3-205ENST00000563854 CLASP1Q7Z460 1538 aa31.12■■■□□ 2.57
NME3-205ENST00000563854 CYB5RLQ6IPT4 315 aa31.11■■■□□ 2.57
NME3-205ENST00000563854 ARAP1Q96P48 1450 aa31.06■■■□□ 2.56
NME3-205ENST00000563854 ADAMTS12P58397 1594 aa31■■■□□ 2.55
NME3-205ENST00000563854 GRIN2AQ12879 1464 aa30.95■■■□□ 2.54
NME3-205ENST00000563854 ERICH3Q5RHP9 1530 aa30.89■■■□□ 2.54
NME3-205ENST00000563854 FHAD1B1AJZ9 1412 aa30.88■■■□□ 2.53
NME3-205ENST00000563854 CEP170Q5SW79 1584 aa30.83■■■□□ 2.53
NME3-205ENST00000563854 NUP160Q12769 1436 aa30.79■■■□□ 2.52
NME3-205ENST00000563854 TRHP20396 242 aaPredicted RBP30.71■■■□□ 2.51
NME3-205ENST00000563854 ERCC6L2Q5T890 1561 aa30.71■■■□□ 2.51
NME3-205ENST00000563854 KIF27Q86VH2 1401 aa30.65■■■□□ 2.5
NME3-205ENST00000563854 SHROOM2Q13796 1616 aa30.62■■■□□ 2.49
NME3-205ENST00000563854 RUSC2Q8N2Y8 1516 aa30.55■■■□□ 2.48
NME3-205ENST00000563854 CUL7Q14999 1698 aa30.55■■■□□ 2.48
NME3-205ENST00000563854 IGF1RP08069 1367 aa30.54■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms