RNA–Protein interactions for RNA: ENST00000337138.8

HIF1A-202, Transcript of hypoxia inducible factor 1 subunit alpha, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HIF1A, Length 3,919 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF1A-202ENST00000337138 NISCHQ9Y2I1 1504 aa21.4■■□□□ 1.02
HIF1A-202ENST00000337138 CCDC180Q9P1Z9 1646 aa18.42■□□□□ 0.54
HIF1A-202ENST00000337138 ZCCHC6Q5VYS8 1495 aaKnown RBP18.23■□□□□ 0.51
HIF1A-202ENST00000337138 DCAF1Q9Y4B6 1507 aa17.81■□□□□ 0.44
HIF1A-202ENST00000337138 SHROOM4Q9ULL8 1493 aa17.62■□□□□ 0.41
HIF1A-202ENST00000337138 MYO15BQ96JP2 1530 aa17.51■□□□□ 0.39
HIF1A-202ENST00000337138 SUPT5HO00267 1087 aaKnown RBP17.48■□□□□ 0.39
HIF1A-202ENST00000337138 ABCC9O60706 1549 aa17.27■□□□□ 0.36
HIF1A-202ENST00000337138 DCAF8L2P0C7V8 631 aa17.27■□□□□ 0.35
HIF1A-202ENST00000337138 CHIC1Q5VXU3 224 aa17.15■□□□□ 0.34
HIF1A-202ENST00000337138 RSF1Q96T23 1441 aaPredicted RBP16.88■□□□□ 0.29
HIF1A-202ENST00000337138 EIF4G1Q04637 1599 aaKnown RBP16.87■□□□□ 0.29
HIF1A-202ENST00000337138 SCRIBQ14160 1630 aa16.85■□□□□ 0.29
HIF1A-202ENST00000337138 RB1CC1Q8TDY2 1594 aa16.82■□□□□ 0.28
HIF1A-202ENST00000337138 PCGF6Q9BYE7 350 aa16.77■□□□□ 0.27
HIF1A-202ENST00000337138 NACADO15069 1562 aa16.75■□□□□ 0.27
HIF1A-202ENST00000337138 HRCP23327 699 aa16.71■□□□□ 0.27
HIF1A-202ENST00000337138 UNC13AQ9UPW8 1703 aa16.68■□□□□ 0.26
HIF1A-202ENST00000337138 MROH2BQ7Z745 1585 aa16.62■□□□□ 0.25
HIF1A-202ENST00000337138 WIZO95785 1651 aa16.6■□□□□ 0.25
HIF1A-202ENST00000337138 CECR2Q9BXF3 1484 aa16.6■□□□□ 0.25
HIF1A-202ENST00000337138 BAZ1AQ9NRL2 1556 aaPredicted RBP16.58■□□□□ 0.24
HIF1A-202ENST00000337138 PPARGC1BQ86YN6 1023 aaKnown RBP16.56■□□□□ 0.24
HIF1A-202ENST00000337138 EHMT2Q96KQ7 1210 aa16.52■□□□□ 0.23
HIF1A-202ENST00000337138 LOC105371045A0A1W2PR82 267 aa16.49■□□□□ 0.23
HIF1A-202ENST00000337138 SMARCA4P51532 1647 aa16.34■□□□□ 0.21
HIF1A-202ENST00000337138 TOP2AP11388 1531 aaKnown RBP16.31■□□□□ 0.2
HIF1A-202ENST00000337138 FAM9AQ8IZU1 332 aaPredicted RBP16.31■□□□□ 0.2
HIF1A-202ENST00000337138 SMARCA2P51531 1590 aa16.3■□□□□ 0.2
HIF1A-202ENST00000337138 PEG3Q9GZU2 1588 aa16.28■□□□□ 0.2
HIF1A-202ENST00000337138 BICRAQ9NZM4 1560 aa16.28■□□□□ 0.2
HIF1A-202ENST00000337138 TRIM26Q12899 539 aaPredicted RBP16.17■□□□□ 0.18
HIF1A-202ENST00000337138 CCDC88BA6NC98 1476 aa16.13■□□□□ 0.17
HIF1A-202ENST00000337138 ABCC8Q09428 1581 aa16.1■□□□□ 0.17
HIF1A-202ENST00000337138 WRNQ14191 1432 aaPredicted RBP eCLIP16.05■□□□□ 0.16
HIF1A-202ENST00000337138 TRIM41Q8WV44 630 aa16.01■□□□□ 0.15
HIF1A-202ENST00000337138 TTBK1Q5TCY1 1321 aaPredicted RBP15.97■□□□□ 0.15
HIF1A-202ENST00000337138 SYNJ1O43426 1573 aa15.91■□□□□ 0.14
HIF1A-202ENST00000337138 PELP1Q8IZL8 1130 aaKnown RBP15.9■□□□□ 0.14
HIF1A-202ENST00000337138 RUSC2Q8N2Y8 1516 aa15.9■□□□□ 0.14
HIF1A-202ENST00000337138 KIF21BO75037 1637 aa15.87■□□□□ 0.13
HIF1A-202ENST00000337138 SOGA1O94964 1423 aa15.87■□□□□ 0.13
HIF1A-202ENST00000337138 BIVM-ERCC5R4GMW8 1640 aa15.82■□□□□ 0.12
HIF1A-202ENST00000337138 TNIKQ9UKE5 1360 aa15.78■□□□□ 0.12
HIF1A-202ENST00000337138 EEA1Q15075 1411 aa15.76■□□□□ 0.11
HIF1A-202ENST00000337138 CEP162Q5TB80 1403 aa15.76■□□□□ 0.11
HIF1A-202ENST00000337138 ATAD2BQ9ULI0 1458 aa15.74■□□□□ 0.11
HIF1A-202ENST00000337138 TOP2BQ02880 1626 aa15.73■□□□□ 0.11
HIF1A-202ENST00000337138 ZEB1P37275 1124 aaPredicted RBP15.7■□□□□ 0.1
HIF1A-202ENST00000337138 PRDM2Q13029 1718 aa15.69■□□□□ 0.1
HIF1A-202ENST00000337138 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.68■□□□□ 0.1
HIF1A-202ENST00000337138 CCER1Q8TC90 406 aaPredicted RBP15.65■□□□□ 0.1
HIF1A-202ENST00000337138 GOLGA3Q08378 1498 aa15.62■□□□□ 0.09
HIF1A-202ENST00000337138 BAZ1BQ9UIG0 1483 aaKnown RBP15.62■□□□□ 0.09
HIF1A-202ENST00000337138 HMGXB3Q12766 1538 aa15.59■□□□□ 0.09
HIF1A-202ENST00000337138 ERICH3Q5RHP9 1530 aa15.54■□□□□ 0.08
HIF1A-202ENST00000337138 CEP164Q9UPV0 1460 aa15.54■□□□□ 0.08
HIF1A-202ENST00000337138 PRXQ9BXM0 1461 aa15.52■□□□□ 0.07
HIF1A-202ENST00000337138 RAPGEF2Q9Y4G8 1499 aa15.51■□□□□ 0.07
HIF1A-202ENST00000337138 SCAF1Q9H7N4 1312 aaKnown RBP15.51■□□□□ 0.07
HIF1A-202ENST00000337138 CUX1P39880 1505 aa15.49■□□□□ 0.07
HIF1A-202ENST00000337138 CSRNP3Q8WYN3 585 aa15.49■□□□□ 0.07
HIF1A-202ENST00000337138 RANGAP1P46060 587 aaPredicted RBP15.47■□□□□ 0.07
HIF1A-202ENST00000337138 NCAPD3P42695 1498 aa15.47■□□□□ 0.07
HIF1A-202ENST00000337138 CLIP1P30622 1438 aa15.47■□□□□ 0.07
HIF1A-202ENST00000337138 ARAP1Q96P48 1450 aa15.45■□□□□ 0.06
HIF1A-202ENST00000337138 VPS8Q8N3P4 1428 aa15.44■□□□□ 0.06
HIF1A-202ENST00000337138 YTHDC1Q96MU7 727 aaKnown RBP15.42■□□□□ 0.06
HIF1A-202ENST00000337138 UBTFP17480 764 aaKnown RBP15.39■□□□□ 0.05
HIF1A-202ENST00000337138 CUX2O14529 1486 aa15.38■□□□□ 0.05
HIF1A-202ENST00000337138 CFTRP13569 1480 aa15.38■□□□□ 0.05
HIF1A-202ENST00000337138 PABPN1Q86U42 306 aaKnown RBP eCLIP15.37■□□□□ 0.05
HIF1A-202ENST00000337138 CENPBP07199 599 aaPredicted RBP15.34■□□□□ 0.05
HIF1A-202ENST00000337138 MYT1Q01538 1121 aa15.34■□□□□ 0.05
HIF1A-202ENST00000337138 DIEXFQ68CQ4 756 aaKnown RBP15.33■□□□□ 0.04
HIF1A-202ENST00000337138 NEUROD1Q13562 356 aa15.31■□□□□ 0.04
HIF1A-202ENST00000337138 GTF3C3Q9Y5Q9 886 aa15.28■□□□□ 0.04
HIF1A-202ENST00000337138 HNRNPUL2Q1KMD3 747 aaKnown RBP15.27■□□□□ 0.04
HIF1A-202ENST00000337138 RRBP1Q9P2E9 1410 aaKnown RBP15.26■□□□□ 0.03
HIF1A-202ENST00000337138 WDR97A6NE52 1622 aa15.24■□□□□ 0.03
HIF1A-202ENST00000337138 ACIN1Q9UKV3 1341 aaKnown RBP15.23■□□□□ 0.03
HIF1A-202ENST00000337138 ARHGAP35Q9NRY4 1499 aa15.23■□□□□ 0.03
HIF1A-202ENST00000337138 MAP3K1Q13233 1512 aa15.22■□□□□ 0.03
HIF1A-202ENST00000337138 CFAP43Q8NDM7 1665 aa15.22■□□□□ 0.03
HIF1A-202ENST00000337138 LRRIQ1Q96JM4 1722 aa15.21■□□□□ 0.02
HIF1A-202ENST00000337138 MAPKBP1O60336 1514 aa15.14■□□□□ 0.01
HIF1A-202ENST00000337138 DHX57Q6P158 1386 aaKnown RBP15.13■□□□□ 0.01
HIF1A-202ENST00000337138 TIAM1Q13009 1591 aa15.12■□□□□ 0.01
HIF1A-202ENST00000337138 APLP2Q06481 763 aa15.1■□□□□ 0.01
HIF1A-202ENST00000337138 CTTNBP2Q8WZ74 1663 aa15.07■□□□□ 0
HIF1A-202ENST00000337138 IGF1RP08069 1367 aa15.06■□□□□ 0
HIF1A-202ENST00000337138 KANK4Q5T7N3 995 aaPredicted RBP15.05■□□□□ -0
HIF1A-202ENST00000337138 KIF27Q86VH2 1401 aa15.05■□□□□ -0
HIF1A-202ENST00000337138 ZNF316A6NFI3 1004 aaPredicted RBP15.03■□□□□ -0
HIF1A-202ENST00000337138 CLSPNQ9HAW4 1339 aa15.03■□□□□ -0
HIF1A-202ENST00000337138 CC2D2AQ9P2K1 1620 aa15.02□□□□□ -0.01
HIF1A-202ENST00000337138 PCF11O94913 1555 aaKnown RBP15.02□□□□□ -0.01
HIF1A-202ENST00000337138 FGD5Q6ZNL6 1462 aa15□□□□□ -0.01
HIF1A-202ENST00000337138 SAMD9Q5K651 1589 aa14.99□□□□□ -0.01
HIF1A-202ENST00000337138 ABCA5Q8WWZ7 1642 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms